Wall clock time and date at job start Tue Mar 31 2020 12:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47139 * 2 1 4 4 C 1.46503 * 119.99979 * 270.00116 * 3 2 1 5 5 C 1.50702 * 109.47182 * 269.99991 * 4 3 2 6 6 H 1.08003 * 119.99402 * 359.97438 * 5 4 3 7 7 C 1.37867 * 120.00013 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99882 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00393 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47121 * 89.99682 * 9 7 5 11 11 H 1.48497 * 109.47103 * 210.00133 * 9 7 5 12 12 H 1.48503 * 109.46687 * 329.99630 * 9 7 5 13 13 C 1.34775 * 120.00133 * 89.99410 * 3 2 1 14 14 O 1.21575 * 119.99874 * 180.02562 * 13 3 2 15 15 N 1.34777 * 119.99888 * 0.02562 * 13 3 2 16 16 C 1.39398 * 119.99872 * 175.40784 * 15 13 3 17 17 C 1.39176 * 119.91827 * 215.76684 * 16 15 13 18 18 C 1.37621 * 120.07716 * 179.97438 * 17 16 15 19 19 C 1.39841 * 119.92097 * 0.06458 * 18 17 16 20 20 C 1.47445 * 120.07867 * 180.23175 * 19 18 17 21 21 O 1.21506 * 119.99895 * 173.41334 * 20 19 18 22 22 O 1.34755 * 119.99935 * 353.41538 * 20 19 18 23 23 C 1.45198 * 116.99889 * 180.02562 * 22 20 19 24 24 C 1.39797 * 119.84227 * 359.95564 * 19 18 17 25 25 C 1.50695 * 120.04123 * 180.02562 * 24 19 18 26 26 C 1.37659 * 119.92002 * 359.97438 * 24 19 18 27 27 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47058 * 299.99907 * 1 2 3 29 29 H 1.08998 * 109.47208 * 60.00254 * 1 2 3 30 30 H 1.09000 * 109.46778 * 239.99682 * 2 1 3 31 31 H 1.08998 * 109.47208 * 119.99746 * 2 1 3 32 32 H 1.09007 * 109.47027 * 29.99724 * 4 3 2 33 33 H 1.09000 * 109.47588 * 149.99742 * 4 3 2 34 34 H 0.96998 * 120.00186 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99856 * 355.40085 * 15 13 3 36 36 H 1.07992 * 119.96146 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.03929 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46550 * 299.99787 * 23 22 20 39 39 H 1.08991 * 109.47067 * 59.99887 * 23 22 20 40 40 H 1.08997 * 109.46963 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47128 * 83.05903 * 25 24 19 42 42 H 1.09001 * 109.47060 * 203.05873 * 25 24 19 43 43 H 1.08994 * 109.46887 * 323.06103 * 25 24 19 44 44 H 1.08000 * 119.96131 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1490 2.3896 -2.8780 8 7 5.3913 2.1833 -3.2574 9 14 3.0128 3.4351 -3.9293 10 1 3.1163 4.8553 -3.5082 11 1 3.4057 3.3119 -5.3560 12 1 1.6131 2.9691 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1630 1.1671 15 7 2.0187 1.3811 2.3344 16 6 2.3409 2.0030 3.5396 17 6 2.8291 1.2476 4.6017 18 6 3.1488 1.8582 5.7929 19 6 2.9813 3.2392 5.9358 20 6 3.3275 3.8977 7.2088 21 8 3.2958 5.1094 7.2942 22 8 3.6790 3.1558 8.2774 23 6 4.0063 3.8714 9.4977 24 6 2.4902 3.9947 4.8670 25 6 2.3085 5.4832 5.0159 26 6 2.1739 3.3774 3.6779 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7174 2.5738 -4.0833 35 1 1.6329 0.4911 2.3357 36 1 2.9580 0.1811 4.4907 37 1 3.5280 1.2715 6.6165 38 1 4.8493 4.5373 9.3133 39 1 3.1444 4.4564 9.8181 40 1 4.2715 3.1574 10.2774 41 1 3.2594 5.9851 4.8365 42 1 1.5710 5.8332 4.2936 43 1 1.9638 5.7079 6.0252 44 1 1.7941 3.9603 2.8519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078567424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:04 Heat of formation + Delta-G solvation = -96.325726 kcal Electronic energy + Delta-G solvation = -26776.190604 eV Core-core repulsion = 22886.523403 eV Total energy + Delta-G solvation = -3889.667201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02848 -41.43449 -39.73051 -37.60170 -37.13480 -36.11911 -34.76590 -33.47805 -31.90664 -31.51420 -29.46840 -28.69383 -27.83269 -25.43197 -24.44293 -23.77850 -23.08115 -21.83763 -20.94277 -19.23439 -19.06157 -18.89928 -18.19302 -17.94411 -17.39528 -16.75616 -16.63095 -16.09317 -15.95313 -15.63641 -15.12769 -14.93807 -14.75628 -14.66718 -14.38785 -14.14839 -14.07620 -13.92827 -13.60307 -13.52824 -13.34415 -13.17465 -13.08123 -12.93601 -12.60925 -12.43347 -12.26786 -12.07623 -11.96539 -11.76156 -11.74059 -11.47090 -11.20185 -10.99756 -10.82213 -9.82344 -9.63232 -9.14227 -8.33145 -6.38112 -0.38510 0.35097 1.32842 1.38180 1.40626 1.45646 1.60162 1.73454 2.13464 2.31580 2.74255 2.89834 3.02403 3.70721 3.75301 3.91496 4.03668 4.16445 4.27744 4.34822 4.34935 4.37748 4.45527 4.51189 4.67617 4.71343 4.73742 4.76589 4.81732 4.90530 4.96864 4.98545 5.05457 5.11268 5.24100 5.27256 5.36638 5.41180 5.46279 5.53211 5.58868 5.90443 5.94463 6.26321 6.63435 6.71977 6.93657 7.23359 7.52575 8.83934 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002947 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.408941 B = 9498.928392 C =10163.491658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.241 3.759 5 C -0.534 4.534 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.234 1.234 13 C 0.695 3.305 14 O -0.614 6.614 15 N -0.672 5.672 16 C 0.203 3.797 17 C -0.161 4.161 18 C -0.024 4.024 19 C -0.174 4.174 20 C 0.513 3.487 21 O -0.529 6.529 22 O -0.355 6.355 23 C 0.030 3.970 24 C -0.009 4.009 25 C -0.116 4.116 26 C -0.159 4.159 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.268 0.732 35 H 0.424 0.576 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 -5.912 21.933 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.119 3.881 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.157 1.157 13 C 0.397 3.603 14 O -0.493 6.493 15 N -0.322 5.322 16 C 0.106 3.894 17 C -0.182 4.182 18 C -0.042 4.042 19 C -0.176 4.176 20 C 0.361 3.639 21 O -0.421 6.421 22 O -0.272 6.272 23 C -0.063 4.063 24 C -0.010 4.010 25 C -0.172 4.172 26 C -0.179 4.179 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.805 -4.776 21.725 24.729 hybrid contribution 0.224 0.557 -0.918 1.097 sum -10.580 -4.219 20.807 23.721 Atomic orbital electron populations 1.22191 0.93763 1.03888 1.02183 1.21795 0.95687 0.80968 1.04182 1.47246 1.67240 1.15298 1.04258 1.19262 0.94805 0.92896 0.81164 1.21569 0.97133 1.32048 1.06547 0.95394 1.25839 0.96691 0.97194 0.99006 1.70054 1.17467 1.46643 1.24505 0.85733 0.80628 0.78947 0.77736 1.20426 1.20134 1.15731 1.16100 0.78575 0.84453 0.81209 1.90879 1.53410 1.18727 1.86319 1.42552 1.66002 1.21293 1.02365 1.18073 0.93735 0.92267 0.85339 1.21163 1.02666 1.02028 0.92310 1.21464 0.93115 0.92034 0.97619 1.18990 1.11781 0.95180 0.91690 1.21153 0.73189 0.85183 0.84424 1.90783 1.50431 1.15980 1.84914 1.86531 1.78335 1.41115 1.21183 1.23569 1.01138 0.98908 0.82706 1.19941 0.93082 0.96866 0.91134 1.21029 1.02301 0.90083 1.03754 1.21093 1.04922 0.94678 0.97257 0.88346 0.92382 0.93187 0.90128 0.88991 0.92689 0.96188 0.92321 0.73475 0.81352 0.81082 0.92225 0.91804 0.84674 0.91333 0.91565 0.89126 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.10 2.55 5.85 86.38 0.51 3.05 16 3 N -0.61 -23.60 2.46 -844.19 -2.07 -25.67 16 4 C 0.24 11.45 4.23 85.63 0.36 11.81 16 5 C -0.53 -31.08 9.94 25.60 0.25 -30.83 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -59.89 13.96 21.44 0.30 -59.59 16 9 Si 0.95 44.10 27.47 68.60 1.88 45.99 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.23 -9.64 6.54 99.48 0.65 -8.99 16 13 C 0.69 27.88 8.11 179.05 1.45 29.33 16 14 O -0.61 -30.77 13.37 -3.95 -0.05 -30.82 16 15 N -0.67 -19.29 5.15 -317.17 -1.63 -20.92 16 16 C 0.20 5.79 6.29 38.38 0.24 6.04 16 17 C -0.16 -3.34 9.95 22.35 0.22 -3.12 16 18 C -0.02 -0.48 9.60 22.51 0.22 -0.26 16 19 C -0.17 -4.48 5.88 -20.09 -0.12 -4.60 16 20 C 0.51 12.90 7.81 70.25 0.55 13.44 16 21 O -0.53 -15.51 13.14 19.82 0.26 -15.25 16 22 O -0.36 -6.89 9.83 -56.66 -0.56 -7.45 16 23 C 0.03 0.39 10.57 113.37 1.20 1.58 16 24 C -0.01 -0.27 5.91 -19.63 -0.12 -0.39 16 25 C -0.12 -3.29 8.70 71.23 0.62 -2.67 16 26 C -0.16 -5.22 8.28 22.35 0.19 -5.03 16 27 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.09 1.86 6.43 -2.39 -0.02 1.84 16 32 H 0.06 2.36 7.13 -2.38 -0.02 2.35 16 33 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.42 8.49 6.62 -92.71 -0.61 7.88 16 36 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.17 2.31 7.62 -2.91 -0.02 2.29 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 43 H 0.09 2.52 5.90 -2.39 -0.01 2.50 16 44 H 0.12 4.74 6.25 -2.91 -0.02 4.72 16 Total: -1.00 -81.55 367.25 5.26 -76.29 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.36 Total: 20.42 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 6.77 Total: 17.00 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.41 Total: -106.18 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.35 Total: -53.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -81.55 5.26 -76.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078567424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.033 kcal (2) G-P(sol) polarization free energy of solvation -81.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds