Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46646 * 2 1 4 4 C 1.50694 * 109.47277 * 240.00634 * 2 1 3 5 5 O 1.21298 * 119.99843 * 239.99927 * 4 2 1 6 6 N 1.34782 * 120.00305 * 59.99472 * 4 2 1 7 7 C 1.40098 * 119.99894 * 174.92470 * 6 4 2 8 8 C 1.38843 * 120.01843 * 326.42489 * 7 6 4 9 9 C 1.38127 * 120.03923 * 179.77738 * 8 7 6 10 10 C 1.38718 * 120.15821 * 0.56575 * 9 8 7 11 11 C 1.38989 * 119.93234 * 359.62785 * 10 9 8 12 12 C 1.38647 * 119.88824 * 0.11564 * 11 10 9 13 13 O 1.36119 * 120.78463 * 180.26477 * 11 10 9 14 14 C 1.43174 * 116.72804 * 342.80063 * 13 11 10 15 15 C 1.53469 * 108.24822 * 46.18994 * 14 13 11 16 16 O 1.36203 * 119.31626 * 179.53598 * 10 9 8 17 17 N 1.46897 * 109.47514 * 119.99823 * 2 1 3 18 18 C 1.46905 * 110.99592 * 58.95637 * 17 2 1 19 19 C 1.46897 * 111.00248 * 295.00483 * 17 2 1 20 20 C 1.50698 * 109.46991 * 189.99847 * 19 17 2 21 21 H 1.07995 * 120.00468 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99523 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00627 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46858 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47442 * 119.99572 * 24 22 20 27 27 H 1.48503 * 109.47337 * 240.00289 * 24 22 20 28 28 H 1.09002 * 109.47236 * 299.99520 * 1 2 3 29 29 H 1.08997 * 109.47792 * 59.99887 * 1 2 3 30 30 H 1.09000 * 109.46646 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99714 * 354.64170 * 6 4 2 32 32 H 1.07999 * 119.98302 * 0.05564 * 8 7 6 33 33 H 1.08004 * 119.92537 * 180.26542 * 9 8 7 34 34 H 1.07992 * 119.99314 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.70728 * 165.87980 * 14 13 11 36 36 H 1.09004 * 109.70485 * 286.50350 * 14 13 11 37 37 H 1.09000 * 109.71285 * 59.91380 * 15 14 13 38 38 H 1.08997 * 109.71379 * 180.55185 * 15 14 13 39 39 H 1.09004 * 109.46958 * 60.00064 * 18 17 2 40 40 H 1.08995 * 109.46986 * 179.97438 * 18 17 2 41 41 H 1.09001 * 109.47224 * 300.00257 * 18 17 2 42 42 H 1.08999 * 109.47188 * 309.99840 * 19 17 2 43 43 H 1.09006 * 109.47097 * 69.99527 * 19 17 2 44 44 H 0.97004 * 120.00621 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2497 -2.4546 7 6 2.2589 -0.8446 -3.5965 8 6 3.5499 -1.3542 -3.5589 9 6 4.0931 -1.9449 -4.6832 10 6 3.3560 -2.0205 -5.8559 11 6 2.0648 -1.5077 -5.8977 12 6 1.5181 -0.9196 -4.7674 13 8 1.3241 -1.5774 -7.0376 14 6 2.0352 -1.8372 -8.2528 15 6 3.0133 -2.9924 -7.9996 16 8 3.9119 -2.5981 -6.9570 17 7 2.0197 -0.6924 1.1994 18 6 1.5284 -2.0761 1.2459 19 6 1.6488 0.0391 2.4180 20 6 2.3680 -0.5572 3.6004 21 1 3.0338 -1.3959 3.4607 22 6 2.1753 -0.0325 4.8608 23 7 1.3634 0.9880 5.0313 24 14 3.0663 -0.7720 6.3267 25 1 3.9135 -1.9036 5.8716 26 1 3.9215 0.2636 6.9602 27 1 2.0719 -1.2645 7.3136 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.0868 0.4909 -2.5451 32 1 4.1281 -1.2927 -2.6489 33 1 5.0960 -2.3445 -4.6506 34 1 0.5152 -0.5202 -4.7982 35 1 1.3322 -2.1160 -9.0376 36 1 2.5878 -0.9467 -8.5528 37 1 2.4615 -3.8808 -7.6927 38 1 3.5756 -3.2040 -8.9091 39 1 1.8764 -2.6150 0.3646 40 1 1.9062 -2.5658 2.1434 41 1 0.4386 -2.0743 1.2638 42 1 1.9297 1.0870 2.3125 43 1 0.5722 -0.0346 2.5726 44 1 1.2281 1.3574 5.9180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -59.374169 kcal Electronic energy + Delta-G solvation = -26706.755673 eV Core-core repulsion = 22818.690811 eV Total energy + Delta-G solvation = -3888.064861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48741 -40.31362 -37.99388 -37.46039 -36.32782 -34.48031 -32.71908 -31.24550 -30.76608 -29.86862 -27.98147 -27.07849 -25.47461 -25.03834 -23.85080 -22.99156 -21.75208 -20.46092 -19.48345 -18.95347 -17.89938 -17.42488 -16.95807 -16.28308 -16.11054 -15.68924 -15.19323 -15.16447 -14.66488 -14.59725 -14.34396 -14.19537 -14.06302 -13.85322 -13.70015 -13.40163 -12.95185 -12.75323 -12.34182 -12.10305 -11.92673 -11.86691 -11.46349 -11.37877 -11.09901 -11.01699 -10.82385 -10.77353 -10.63795 -10.42432 -9.98351 -9.89773 -9.33202 -9.05367 -8.70153 -8.43471 -7.81969 -7.21846 -6.03061 -4.03220 1.07715 1.17479 2.62493 2.78545 2.90885 3.23301 3.32563 3.39999 3.46393 3.62120 3.90928 4.40630 4.43781 4.45801 4.54585 4.78525 4.89279 4.92389 5.05297 5.08292 5.19008 5.26748 5.33129 5.38381 5.46279 5.53206 5.76059 5.83688 5.96286 6.01884 6.16885 6.25737 6.30994 6.40264 6.52108 6.65458 6.72833 6.97623 7.20333 7.23186 7.32046 7.40967 7.80628 8.04295 8.17244 8.32898 8.53263 9.05114 9.60882 11.07931 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.002342 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.575949 B =11954.631394 C =12461.163312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.106 0.894 4 C 0.521 3.479 5 O -0.495 6.495 6 N -0.678 5.678 7 C 0.165 3.835 8 C -0.114 4.114 9 C -0.091 4.091 10 C 0.027 3.973 11 C 0.068 3.932 12 C -0.147 4.147 13 O -0.308 6.308 14 C 0.021 3.979 15 C 0.020 3.980 16 O -0.308 6.308 17 N -0.517 5.517 18 C 0.022 3.978 19 C 0.193 3.807 20 C -0.504 4.504 21 H 0.065 0.935 22 C 0.054 3.946 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.410 0.590 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.009 0.991 42 H 0.029 0.971 43 H -0.003 1.003 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -2.974 -27.252 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.046 4.046 3 H 0.124 0.876 4 C 0.309 3.691 5 O -0.367 6.367 6 N -0.325 5.325 7 C 0.070 3.930 8 C -0.135 4.135 9 C -0.110 4.110 10 C -0.018 4.018 11 C 0.023 3.977 12 C -0.169 4.169 13 O -0.223 6.223 14 C -0.054 4.054 15 C -0.055 4.055 16 O -0.223 6.223 17 N -0.241 5.241 18 C -0.126 4.126 19 C 0.068 3.932 20 C -0.543 4.543 21 H 0.083 0.917 22 C -0.147 4.147 23 N -0.540 5.540 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.212 1.212 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.014 0.986 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.053 -3.593 -26.996 27.234 hybrid contribution -0.934 0.105 0.607 1.119 sum -0.987 -3.488 -26.389 26.637 Atomic orbital electron populations 1.22448 0.96064 1.02911 1.02935 1.21651 0.93729 0.99076 0.90163 0.87643 1.21176 0.79838 0.84267 0.83805 1.90644 1.35733 1.24537 1.85748 1.43743 1.48088 1.36450 1.04255 1.17344 0.91848 0.97538 0.86239 1.21036 0.93754 0.99832 0.98853 1.20330 1.00672 1.00969 0.89024 1.18843 0.93226 1.01034 0.88709 1.18449 0.91030 1.00623 0.87612 1.19985 1.00845 1.04989 0.91046 1.86294 1.34419 1.87885 1.13656 1.23614 0.96888 0.98830 0.86089 1.23593 0.93330 0.97060 0.91559 1.86329 1.34279 1.75756 1.25952 1.62151 1.58369 1.02410 1.01156 1.22525 0.96135 0.90677 1.03236 1.19801 0.94654 0.93766 0.84984 1.21198 1.26015 1.16089 0.90958 0.91666 1.24976 0.95526 0.95158 0.99010 1.69957 1.37001 1.24266 1.22769 0.86434 0.79484 0.79186 0.82298 1.19599 1.21022 1.21156 0.90279 0.92734 0.91898 0.75389 0.83412 0.84423 0.84559 0.86193 0.90503 0.90583 0.86225 0.91005 0.90851 0.97221 0.95249 0.98564 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.39 37.16 0.31 -2.38 16 2 C 0.07 1.13 2.78 -68.87 -0.19 0.94 16 3 H 0.11 1.68 8.03 -51.93 -0.42 1.26 16 4 C 0.52 8.31 6.61 -10.99 -0.07 8.24 16 5 O -0.49 -9.48 11.60 5.54 0.06 -9.41 16 6 N -0.68 -8.31 5.27 -9.85 -0.05 -8.37 16 7 C 0.17 2.12 6.28 -83.66 -0.52 1.60 16 8 C -0.11 -1.56 8.65 -39.40 -0.34 -1.90 16 9 C -0.09 -1.12 9.95 -39.44 -0.39 -1.52 16 10 C 0.03 0.33 6.49 -39.13 -0.25 0.07 16 11 C 0.07 0.81 6.49 -39.15 -0.25 0.56 16 12 C -0.15 -1.71 9.87 -39.24 -0.39 -2.10 16 13 O -0.31 -3.23 10.42 -32.90 -0.34 -3.57 16 14 C 0.02 0.14 7.26 37.40 0.27 0.41 16 15 C 0.02 0.14 7.26 37.40 0.27 0.41 16 16 O -0.31 -3.34 10.42 -33.17 -0.35 -3.68 16 17 N -0.52 -11.27 4.53 -237.73 -1.08 -12.35 16 18 C 0.02 0.47 8.57 60.07 0.51 0.98 16 19 C 0.19 4.89 4.16 -4.98 -0.02 4.87 16 20 C -0.50 -14.19 8.46 -34.44 -0.29 -14.48 16 21 H 0.07 1.86 7.12 -52.49 -0.37 1.49 16 22 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 24 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.08 1.30 6.75 -51.93 -0.35 0.95 16 29 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 31 H 0.41 3.71 8.09 -40.82 -0.33 3.38 16 32 H 0.15 2.23 6.42 -52.49 -0.34 1.89 16 33 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.47 5.44 -51.93 -0.28 1.19 16 40 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 41 H 0.01 0.19 6.28 -51.93 -0.33 -0.14 16 42 H 0.03 0.79 8.00 -51.93 -0.42 0.37 16 43 H 0.00 -0.09 6.94 -51.93 -0.36 -0.45 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -33.70 353.74 -8.10 -41.80 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.93 Total: 2.02 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.46 Total: -2.86 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.39 Total: -46.39 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.62 Total: -16.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.70 -8.10 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds