Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46646 * 2 1 4 4 C 1.50694 * 109.47277 * 240.00634 * 2 1 3 5 5 O 1.21298 * 119.99843 * 239.99927 * 4 2 1 6 6 N 1.34782 * 120.00305 * 59.99472 * 4 2 1 7 7 C 1.40098 * 119.99894 * 174.92470 * 6 4 2 8 8 C 1.38843 * 120.01843 * 326.42489 * 7 6 4 9 9 C 1.38127 * 120.03923 * 179.77738 * 8 7 6 10 10 C 1.38718 * 120.15821 * 0.56575 * 9 8 7 11 11 C 1.38989 * 119.93234 * 359.62785 * 10 9 8 12 12 C 1.38647 * 119.88824 * 0.11564 * 11 10 9 13 13 O 1.36119 * 120.78463 * 180.26477 * 11 10 9 14 14 C 1.43174 * 116.72804 * 342.80063 * 13 11 10 15 15 C 1.53469 * 108.24822 * 46.18994 * 14 13 11 16 16 O 1.36203 * 119.31626 * 179.53598 * 10 9 8 17 17 N 1.46897 * 109.47514 * 119.99823 * 2 1 3 18 18 C 1.46905 * 110.99592 * 58.95637 * 17 2 1 19 19 C 1.46897 * 111.00248 * 295.00483 * 17 2 1 20 20 C 1.50698 * 109.46991 * 189.99847 * 19 17 2 21 21 H 1.07995 * 120.00468 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99523 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00627 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46858 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47442 * 119.99572 * 24 22 20 27 27 H 1.48503 * 109.47337 * 240.00289 * 24 22 20 28 28 H 1.09002 * 109.47236 * 299.99520 * 1 2 3 29 29 H 1.08997 * 109.47792 * 59.99887 * 1 2 3 30 30 H 1.09000 * 109.46646 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99714 * 354.64170 * 6 4 2 32 32 H 1.07999 * 119.98302 * 0.05564 * 8 7 6 33 33 H 1.08004 * 119.92537 * 180.26542 * 9 8 7 34 34 H 1.07992 * 119.99314 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.70728 * 165.87980 * 14 13 11 36 36 H 1.09004 * 109.70485 * 286.50350 * 14 13 11 37 37 H 1.09000 * 109.71285 * 59.91380 * 15 14 13 38 38 H 1.08997 * 109.71379 * 180.55185 * 15 14 13 39 39 H 1.09004 * 109.46958 * 60.00064 * 18 17 2 40 40 H 1.08995 * 109.46986 * 179.97438 * 18 17 2 41 41 H 1.09001 * 109.47224 * 300.00257 * 18 17 2 42 42 H 1.08999 * 109.47188 * 309.99840 * 19 17 2 43 43 H 1.09006 * 109.47097 * 69.99527 * 19 17 2 44 44 H 0.97004 * 120.00621 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7067 -0.2497 -2.4546 7 6 2.2589 -0.8446 -3.5965 8 6 3.5499 -1.3542 -3.5589 9 6 4.0931 -1.9449 -4.6832 10 6 3.3560 -2.0205 -5.8559 11 6 2.0648 -1.5077 -5.8977 12 6 1.5181 -0.9196 -4.7674 13 8 1.3241 -1.5774 -7.0376 14 6 2.0352 -1.8372 -8.2528 15 6 3.0133 -2.9924 -7.9996 16 8 3.9119 -2.5981 -6.9570 17 7 2.0197 -0.6924 1.1994 18 6 1.5284 -2.0761 1.2459 19 6 1.6488 0.0391 2.4180 20 6 2.3680 -0.5572 3.6004 21 1 3.0338 -1.3959 3.4607 22 6 2.1753 -0.0325 4.8608 23 7 1.3634 0.9880 5.0313 24 14 3.0663 -0.7720 6.3267 25 1 3.9135 -1.9036 5.8716 26 1 3.9215 0.2636 6.9602 27 1 2.0719 -1.2645 7.3136 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.0868 0.4909 -2.5451 32 1 4.1281 -1.2927 -2.6489 33 1 5.0960 -2.3445 -4.6506 34 1 0.5152 -0.5202 -4.7982 35 1 1.3322 -2.1160 -9.0376 36 1 2.5878 -0.9467 -8.5528 37 1 2.4615 -3.8808 -7.6927 38 1 3.5756 -3.2040 -8.9091 39 1 1.8764 -2.6150 0.3646 40 1 1.9062 -2.5658 2.1434 41 1 0.4386 -2.0743 1.2638 42 1 1.9297 1.0870 2.3125 43 1 0.5722 -0.0346 2.5726 44 1 1.2281 1.3574 5.9180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -83.557805 kcal Electronic energy + Delta-G solvation = -26707.804354 eV Core-core repulsion = 22818.690811 eV Total energy + Delta-G solvation = -3889.113542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32057 -41.49173 -39.13736 -38.22405 -37.78220 -35.59426 -34.78432 -32.21046 -31.88183 -30.90511 -29.08541 -28.84109 -26.99634 -26.05630 -25.26630 -23.95060 -23.08318 -21.60242 -20.81131 -19.80380 -18.80133 -18.64610 -18.28068 -17.82401 -17.14027 -16.71599 -16.54246 -16.29392 -15.93885 -15.68808 -15.51641 -15.40200 -15.36044 -14.90396 -14.79050 -14.56517 -14.26851 -14.19533 -13.68033 -13.44343 -13.16541 -12.97575 -12.87767 -12.72060 -12.68004 -12.44859 -12.38130 -12.15533 -11.97302 -11.96174 -11.51172 -11.33392 -10.96327 -10.59779 -10.49456 -9.59963 -8.95968 -8.76301 -8.19632 -6.27697 0.11978 0.24177 1.40624 1.41734 1.52381 1.55184 1.77965 2.10249 2.38251 2.43439 2.67202 3.13002 3.29841 3.33795 3.62066 3.68683 3.97992 4.06526 4.08582 4.10626 4.15257 4.24024 4.36119 4.51236 4.55827 4.60381 4.62304 4.70236 4.71982 4.83539 4.86412 5.05403 5.10204 5.15207 5.23087 5.29363 5.31961 5.36803 5.66658 5.73190 5.88672 6.04781 6.30867 6.35624 6.39198 6.64640 6.87296 7.14700 7.41140 8.91011 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035098 B = 0.002342 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.575949 B =11954.631394 C =12461.163312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 H 0.115 0.885 4 C 0.528 3.472 5 O -0.532 6.532 6 N -0.657 5.657 7 C 0.152 3.848 8 C -0.130 4.130 9 C -0.100 4.100 10 C 0.025 3.975 11 C 0.065 3.935 12 C -0.141 4.141 13 O -0.318 6.318 14 C 0.015 3.985 15 C 0.012 3.988 16 O -0.323 6.323 17 N -0.535 5.535 18 C 0.033 3.967 19 C 0.211 3.789 20 C -0.525 4.525 21 H 0.054 0.946 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.427 0.573 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.018 0.982 42 H 0.011 0.989 43 H -0.021 1.021 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -3.096 -29.507 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.050 4.050 3 H 0.133 0.867 4 C 0.316 3.684 5 O -0.407 6.407 6 N -0.305 5.305 7 C 0.057 3.943 8 C -0.150 4.150 9 C -0.119 4.119 10 C -0.020 4.020 11 C 0.019 3.981 12 C -0.162 4.162 13 O -0.233 6.233 14 C -0.059 4.059 15 C -0.062 4.062 16 O -0.238 6.238 17 N -0.259 5.259 18 C -0.115 4.115 19 C 0.086 3.914 20 C -0.563 4.563 21 H 0.073 0.927 22 C -0.193 4.193 23 N -0.570 5.570 24 Si 0.789 3.211 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.267 0.733 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.029 0.971 43 H -0.003 1.003 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.747 -3.693 -29.312 29.553 hybrid contribution -0.721 0.128 1.070 1.296 sum -1.468 -3.565 -28.243 28.504 Atomic orbital electron populations 1.22349 0.93892 1.02921 1.04207 1.21736 0.95489 0.99061 0.88683 0.86696 1.20844 0.79378 0.83682 0.84471 1.90634 1.37537 1.26230 1.86324 1.43380 1.47654 1.36451 1.03009 1.17379 0.91863 0.98434 0.86642 1.20936 0.94402 1.01087 0.98573 1.20420 1.01249 1.01087 0.89137 1.18930 0.93320 1.00751 0.89030 1.18573 0.90925 1.00197 0.88418 1.20148 1.01502 1.04257 0.90281 1.86277 1.35078 1.87744 1.14218 1.23986 0.97721 0.98995 0.85215 1.23973 0.93606 0.97080 0.91582 1.86306 1.35746 1.75531 1.26240 1.61953 1.59541 1.02747 1.01626 1.22382 0.96504 0.90248 1.02332 1.19409 0.93089 0.92850 0.86098 1.21483 1.26259 1.16068 0.92482 0.92739 1.25798 0.96217 0.95509 1.01760 1.70052 1.38016 1.25254 1.23661 0.85408 0.78423 0.78453 0.78774 1.19437 1.20225 1.20259 0.92286 0.88118 0.92468 0.73313 0.85500 0.83679 0.82368 0.82696 0.89898 0.90492 0.82808 0.90333 0.93163 0.96342 0.97078 1.00287 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 8.39 71.98 0.60 -4.30 16 2 C 0.06 2.10 2.78 44.17 0.12 2.22 16 3 H 0.12 3.61 8.03 -2.39 -0.02 3.59 16 4 C 0.53 16.63 6.61 87.65 0.58 17.21 16 5 O -0.53 -20.73 11.60 -3.09 -0.04 -20.76 16 6 N -0.66 -15.18 5.27 -303.46 -1.60 -16.78 16 7 C 0.15 3.75 6.28 38.09 0.24 3.99 16 8 C -0.13 -3.58 8.65 22.39 0.19 -3.39 16 9 C -0.10 -2.48 9.95 22.36 0.22 -2.26 16 10 C 0.03 0.59 6.49 22.56 0.15 0.73 16 11 C 0.06 1.43 6.49 22.55 0.15 1.57 16 12 C -0.14 -3.00 9.87 22.49 0.22 -2.77 16 13 O -0.32 -5.84 10.42 -82.69 -0.86 -6.71 16 14 C 0.02 0.15 7.26 72.14 0.52 0.68 16 15 C 0.01 0.13 7.26 72.14 0.52 0.66 16 16 O -0.32 -6.48 10.42 -83.65 -0.87 -7.35 16 17 N -0.53 -23.86 4.53 -906.05 -4.10 -27.96 16 18 C 0.03 1.43 8.57 127.69 1.09 2.52 16 19 C 0.21 11.07 4.16 85.56 0.36 11.42 16 20 C -0.52 -30.28 8.46 25.60 0.22 -30.07 16 21 H 0.05 3.20 7.12 -2.91 -0.02 3.18 16 22 C 0.01 0.31 5.46 84.66 0.46 0.77 16 23 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 24 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.06 1.92 6.75 -2.39 -0.02 1.90 16 29 H 0.10 1.86 7.45 -2.39 -0.02 1.84 16 30 H 0.06 1.68 6.39 -2.39 -0.02 1.66 16 31 H 0.43 6.62 8.09 -92.71 -0.75 5.87 16 32 H 0.13 4.02 6.42 -2.91 -0.02 4.01 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 3.28 5.44 -2.38 -0.01 3.27 16 40 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 41 H 0.02 0.74 6.28 -2.39 -0.01 0.72 16 42 H 0.01 0.61 8.00 -2.39 -0.02 0.60 16 43 H -0.02 -1.13 6.94 -2.38 -0.02 -1.14 16 44 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -74.51 353.74 0.78 -73.73 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.29 Total: 14.61 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.65 Total: -1.01 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -5.42 Total: -99.63 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.77 Total: -34.82 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.51 0.78 -73.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.826 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds