Wall clock time and date at job start Tue Mar 31 2020 12:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47241 * 2 1 4 4 C 1.46501 * 120.00146 * 270.00614 * 3 2 1 5 5 C 1.50700 * 109.46616 * 270.00061 * 4 3 2 6 6 H 1.07998 * 120.00602 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99653 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99785 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47317 * 59.99735 * 9 7 5 11 11 H 1.48494 * 109.47325 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47414 * 300.00002 * 9 7 5 13 13 C 1.34779 * 119.99704 * 90.00043 * 3 2 1 14 14 O 1.21284 * 119.99254 * 179.97438 * 13 3 2 15 15 C 1.50690 * 120.00149 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47040 * 179.97438 * 15 13 3 17 17 C 1.39709 * 119.99660 * 179.97438 * 16 15 13 18 18 C 1.39026 * 120.00525 * 359.97401 * 17 16 15 19 19 C 1.38208 * 120.23228 * 180.02562 * 18 17 16 20 20 C 1.38014 * 120.23241 * 359.97359 * 19 18 17 21 21 C 1.39629 * 119.99973 * 0.02562 * 20 19 18 22 22 C 1.47746 * 120.11452 * 180.02562 * 21 20 19 23 23 O 1.21476 * 119.99993 * 179.97438 * 22 21 20 24 24 O 1.34715 * 120.00169 * 359.97438 * 22 21 20 25 25 C 1.45193 * 117.00071 * 180.02562 * 24 22 21 26 26 C 1.38635 * 119.99791 * 179.97438 * 17 16 15 27 27 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46577 * 299.99499 * 1 2 3 29 29 H 1.09000 * 109.47264 * 59.99703 * 1 2 3 30 30 H 1.09003 * 109.46479 * 239.99974 * 2 1 3 31 31 H 1.09000 * 109.47264 * 120.00297 * 2 1 3 32 32 H 1.08999 * 109.47040 * 29.99241 * 4 3 2 33 33 H 1.08992 * 109.47132 * 149.99958 * 4 3 2 34 34 H 0.96997 * 120.00078 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47712 * 59.99398 * 15 13 3 36 36 H 1.09004 * 109.47364 * 299.99332 * 15 13 3 37 37 H 0.96999 * 120.00080 * 359.97438 * 16 15 13 38 38 H 1.07999 * 119.88830 * 0.02562 * 18 17 16 39 39 H 1.07995 * 119.88739 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.00060 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.47013 * 60.00195 * 25 24 22 42 42 H 1.09000 * 109.47504 * 179.97438 * 25 24 22 43 43 H 1.08998 * 109.47330 * 300.00528 * 25 24 22 44 44 H 1.08001 * 120.11314 * 359.70675 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1493 2.3905 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9137 2.0975 -3.4165 10 1 6.1415 0.6409 -3.5944 11 1 6.1615 2.7985 -4.7019 12 1 6.8410 2.6207 -2.3813 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1598 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.3103 2.2033 3.5858 17 6 2.1550 1.7641 4.9030 18 6 1.6985 0.4758 5.1570 19 6 1.5427 0.0367 6.4582 20 6 1.8398 0.8739 7.5144 21 6 2.2990 2.1697 7.2704 22 6 2.6184 3.0679 8.3992 23 8 3.0182 4.1947 8.1845 24 8 2.4662 2.6372 9.6666 25 6 2.7984 3.5736 10.7253 26 6 2.4563 2.6131 5.9567 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1410 -1.1383 34 1 3.6753 3.5172 -4.4434 35 1 2.6228 0.4186 2.5298 36 1 0.9445 1.0114 2.5303 37 1 2.6284 3.1023 3.4086 38 1 1.4647 -0.1842 4.3348 39 1 1.1881 -0.9654 6.6492 40 1 1.7163 0.5270 8.5298 41 1 2.1678 4.4584 10.6389 42 1 2.6310 3.1017 11.6935 43 1 3.8454 3.8639 10.6383 44 1 2.8156 3.6127 5.7615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088523673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:15 Heat of formation + Delta-G solvation = -89.669385 kcal Electronic energy + Delta-G solvation = -25957.833519 eV Core-core repulsion = 22068.454959 eV Total energy + Delta-G solvation = -3889.378560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73702 -39.67592 -38.85895 -36.63221 -35.72793 -35.09288 -32.87338 -31.45521 -30.47458 -30.15559 -28.07617 -27.66149 -26.01971 -24.20210 -23.13575 -22.57623 -22.26364 -20.70828 -18.77114 -18.27475 -17.36742 -16.82043 -16.56545 -16.49274 -16.18606 -16.07134 -15.38096 -15.20172 -14.97095 -14.30144 -13.95439 -13.86821 -13.74144 -13.65314 -13.52522 -13.38891 -12.90545 -12.62382 -12.42137 -12.10774 -12.09288 -11.88884 -11.69064 -11.41250 -11.27151 -11.06433 -10.99465 -10.85005 -10.70278 -10.59928 -10.27264 -10.19891 -9.73641 -9.20224 -9.16039 -8.48957 -7.83010 -7.53376 -6.10265 -4.15508 0.58053 1.40047 2.41234 2.42886 3.16992 3.24734 3.28386 3.33305 3.37081 3.72498 3.88755 4.39672 4.48654 4.71135 4.81372 4.81529 4.89736 4.98159 5.10015 5.14493 5.20450 5.24396 5.28901 5.30752 5.38360 5.43437 5.53605 5.68233 5.70960 5.92764 5.98687 6.12789 6.13604 6.19856 6.29572 6.38826 6.53585 6.90941 7.19464 7.33946 7.41407 7.53209 7.71849 7.85042 8.15264 8.25000 8.76112 8.92129 9.49687 10.97832 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002421 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.954662 B =11563.639485 C =12464.450903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.103 3.897 16 N -0.728 5.728 17 C 0.217 3.783 18 C -0.168 4.168 19 C -0.083 4.083 20 C -0.129 4.129 21 C -0.080 4.080 22 C 0.509 3.491 23 O -0.504 6.504 24 O -0.355 6.355 25 C 0.036 3.964 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.414 0.586 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -8.783 22.790 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.025 4.025 16 N -0.360 5.360 17 C 0.112 3.888 18 C -0.191 4.191 19 C -0.101 4.101 20 C -0.150 4.150 21 C -0.082 4.082 22 C 0.354 3.646 23 O -0.393 6.393 24 O -0.271 6.271 25 C -0.058 4.058 26 C -0.155 4.155 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.253 0.747 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.289 -7.829 22.358 24.510 hybrid contribution 1.146 0.289 -0.443 1.263 sum -5.142 -7.540 21.915 23.739 Atomic orbital electron populations 1.22233 0.96527 1.01647 1.02456 1.21489 0.93693 0.83940 1.02988 1.48234 1.63118 1.13353 1.07542 1.19316 0.96446 0.93656 0.77811 1.21365 0.96809 1.32220 1.06408 0.92500 1.24938 0.97929 0.94839 0.96367 1.69915 1.35774 1.33193 1.14354 0.86545 0.84665 0.78275 0.77866 1.20206 1.21136 1.20175 1.20135 0.79061 0.87102 0.85188 1.90678 1.46027 1.18032 1.86727 1.21226 1.01588 0.93674 0.86048 1.44533 1.72861 1.17705 1.00883 1.17616 0.93956 0.92768 0.84483 1.20955 1.05408 0.94940 0.97812 1.20855 0.98187 0.99469 0.91609 1.21124 1.01414 0.92631 0.99825 1.18693 1.05190 0.94154 0.90185 1.21336 0.74300 0.85990 0.82987 1.90847 1.42365 1.20508 1.85573 1.86544 1.79515 1.45487 1.15575 1.23279 1.01492 0.93028 0.87965 1.20629 1.04423 1.00660 0.89810 0.91926 0.93041 0.91889 0.89570 0.91638 0.94758 0.93816 0.92581 0.89621 0.89652 0.74670 0.85385 0.85260 0.85019 0.91818 0.87978 0.91801 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.10 1.48 5.93 -4.04 -0.02 1.46 16 3 N -0.59 -11.63 2.46 -175.06 -0.43 -12.06 16 4 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.50 9.66 7.74 -10.99 -0.09 9.58 16 14 O -0.54 -12.77 15.25 5.55 0.08 -12.69 16 15 C 0.10 1.41 3.94 -5.20 -0.02 1.39 16 16 N -0.73 -10.26 5.71 -59.84 -0.34 -10.60 16 17 C 0.22 2.71 6.65 -83.83 -0.56 2.16 16 18 C -0.17 -1.72 9.31 -39.30 -0.37 -2.09 16 19 C -0.08 -0.73 10.02 -39.67 -0.40 -1.13 16 20 C -0.13 -1.26 9.61 -39.14 -0.38 -1.63 16 21 C -0.08 -0.96 5.87 -105.01 -0.62 -1.58 16 22 C 0.51 6.37 7.90 34.62 0.27 6.64 16 23 O -0.50 -7.62 16.14 -19.25 -0.31 -7.93 16 24 O -0.35 -3.61 9.81 -40.53 -0.40 -4.00 16 25 C 0.04 0.26 10.56 101.05 1.07 1.32 16 26 C -0.13 -1.71 9.44 -38.95 -0.37 -2.07 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.09 1.03 7.21 -51.93 -0.37 0.65 16 36 H 0.09 0.97 6.99 -51.93 -0.36 0.61 16 37 H 0.41 6.51 7.45 -40.82 -0.30 6.20 16 38 H 0.13 1.10 6.71 -52.49 -0.35 0.74 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.04 7.60 -52.48 -0.40 0.64 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.14 1.83 7.65 -52.49 -0.40 1.43 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -33.88 376.43 -7.75 -41.64 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.21 Total: 3.56 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.54 Total: 5.26 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.03 Total: -48.08 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.62 Total: -24.62 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.88 -7.75 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.034 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds