Wall clock time and date at job start Tue Mar 31 2020 13:01:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42901 * 109.46776 * 2 1
4 4 C 1.42901 * 114.00160 * 180.02562 * 3 2 1
5 5 C 1.50699 * 109.47308 * 179.97438 * 4 3 2
6 6 C 1.38316 * 119.96221 * 269.97344 * 5 4 3
7 7 C 1.38269 * 120.15512 * 179.97438 * 6 5 4
8 8 C 1.38123 * 120.07370 * 359.75461 * 7 6 5
9 9 C 1.38910 * 119.92159 * 0.52269 * 8 7 6
10 10 N 1.39721 * 120.07690 * 179.75085 * 9 8 7
11 11 C 1.34777 * 119.99720 * 326.49776 * 10 9 8
12 12 O 1.21374 * 120.00047 * 354.72645 * 11 10 9
13 13 C 1.49358 * 119.99799 * 174.72510 * 11 10 9
14 14 O 1.21362 * 120.00139 * 359.97438 * 13 11 10
15 15 N 1.34777 * 119.99799 * 180.02562 * 13 11 10
16 16 C 1.46494 * 119.99727 * 179.97438 * 15 13 11
17 17 H 1.09003 * 109.47172 * 35.00307 * 16 15 13
18 18 C 1.53005 * 109.47534 * 275.00143 * 16 15 13
19 19 C 1.50696 * 109.47286 * 155.00161 * 16 15 13
20 20 H 1.08005 * 119.99749 * 0.02562 * 19 16 15
21 21 C 1.37880 * 120.00425 * 180.02562 * 19 16 15
22 22 N 1.31518 * 119.99797 * 179.72837 * 21 19 16
23 23 Si 1.86793 * 120.00040 * 359.97438 * 21 19 16
24 24 H 1.48500 * 109.47203 * 269.72826 * 23 21 19
25 25 H 1.48504 * 109.46985 * 29.72731 * 23 21 19
26 26 H 1.48502 * 109.47298 * 149.72354 * 23 21 19
27 27 C 1.38072 * 119.96002 * 90.00143 * 5 4 3
28 28 H 1.09001 * 109.46787 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47118 * 300.00106 * 1 2 3
30 30 H 1.08993 * 109.47031 * 60.00156 * 1 2 3
31 31 H 1.09000 * 109.47118 * 239.99894 * 2 1 3
32 32 H 1.08996 * 109.47327 * 119.99415 * 2 1 3
33 33 H 1.09004 * 109.46843 * 59.99400 * 4 3 2
34 34 H 1.09005 * 109.46944 * 300.00141 * 4 3 2
35 35 H 1.08006 * 119.91922 * 359.97438 * 6 5 4
36 36 H 1.07994 * 119.96220 * 180.02562 * 7 6 5
37 37 H 1.07997 * 120.03779 * 180.27109 * 8 7 6
38 38 H 0.97002 * 120.00479 * 146.49856 * 10 9 8
39 39 H 0.97000 * 119.99845 * 0.02562 * 15 13 11
40 40 H 1.09001 * 109.46893 * 59.99683 * 18 16 15
41 41 H 1.08998 * 109.47383 * 179.97438 * 18 16 15
42 42 H 1.08996 * 109.46674 * 300.00208 * 18 16 15
43 43 H 0.97004 * 119.99546 * 180.27460 * 22 21 19
44 44 H 1.07995 * 120.03958 * 0.02562 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4603 -0.0006
5 6 3.8193 2.9163 -0.0012
6 6 3.9975 3.5833 -1.1997
7 6 4.3534 4.9194 -1.2049
8 6 4.5273 5.5939 -0.0123
9 6 4.3549 4.9257 1.1933
10 7 4.5351 5.6036 2.4017
11 6 5.4576 6.5818 2.4944
12 8 6.1970 6.8094 1.5592
13 6 5.5700 7.3858 3.7481
14 8 4.8304 7.1586 4.6831
15 7 6.4922 8.3644 3.8407
16 6 6.6020 9.1533 5.0702
17 1 6.3903 8.5176 5.9300
18 6 5.5967 10.3059 5.0282
19 6 7.9981 9.7085 5.1878
20 1 8.7301 9.4953 4.4229
21 6 8.3408 10.4885 6.2718
22 7 9.5607 10.9686 6.3770
23 14 7.0745 10.8578 7.5944
24 1 6.3471 12.1054 7.2487
25 1 6.1106 9.7317 7.6850
26 1 7.7590 11.0297 8.9010
27 6 3.9976 3.5829 1.1948
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5137 0.8900
33 1 3.8332 0.9768 -0.8908
34 1 3.8340 0.9766 0.8892
35 1 3.8582 3.0591 -2.1338
36 1 4.4913 5.4371 -2.1426
37 1 4.8011 6.6386 -0.0170
38 1 3.9963 5.3703 3.1738
39 1 7.0826 8.5467 3.0930
40 1 4.5869 9.9043 4.9432
41 1 5.6781 10.8926 5.9432
42 1 5.8085 10.9415 4.1685
43 1 9.8029 11.5141 7.1417
44 1 3.8592 3.0613 2.1303
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122826346.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:02
Heat of formation + Delta-G solvation = -84.356871 kcal
Electronic energy + Delta-G solvation = -25714.295209 eV
Core-core repulsion = 21825.147017 eV
Total energy + Delta-G solvation = -3889.148193 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.93803 -39.52034 -38.45263 -37.74933 -35.59177 -34.78088 -32.63653 -32.45325
-30.94594 -30.21072 -29.88496 -26.26966 -25.44485 -24.99621 -23.16609 -22.59386
-22.09449 -20.51045 -19.76602 -18.82074 -17.43098 -16.97001 -16.78886 -16.53735
-16.39804 -15.78262 -15.72676 -15.48972 -14.89127 -14.76396 -14.35515 -13.98575
-13.69984 -13.41839 -13.32107 -13.24601 -12.98821 -12.75299 -12.63193 -12.28907
-12.00573 -11.95405 -11.79049 -11.59867 -11.43329 -11.41376 -11.22575 -10.87211
-10.49054 -10.27011 -10.00118 -9.75836 -9.34208 -9.26073 -9.04916 -8.85270
-8.42094 -8.30602 -6.26034 -4.30141 0.95435 1.10334 1.76656 2.52917
3.18831 3.21562 3.31277 3.33613 3.50876 3.80586 3.92541 4.25657
4.49013 4.57059 4.65368 4.81683 4.82000 4.87962 4.95999 4.98235
5.04819 5.07513 5.17141 5.30542 5.32969 5.45851 5.51354 5.71472
5.73828 6.08052 6.12552 6.19435 6.23961 6.30437 6.35311 6.42186
6.68881 6.76074 6.81689 6.90131 7.07273 7.10940 7.36120 7.69244
7.99929 8.35159 8.47333 8.74004 9.32200 10.85842
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.027132 B = 0.002177 C = 0.002083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.730400 B =12858.254352 C =13438.581538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.056 3.944
3 O -0.383 6.383
4 C 0.106 3.894
5 C -0.075 4.075
6 C -0.114 4.114
7 C -0.102 4.102
8 C -0.113 4.113
9 C 0.148 3.852
10 N -0.651 5.651
11 C 0.509 3.491
12 O -0.500 6.500
13 C 0.497 3.503
14 O -0.536 6.536
15 N -0.660 5.660
16 C 0.234 3.766
17 H 0.054 0.946
18 C -0.163 4.163
19 C -0.539 4.539
20 H 0.083 0.917
21 C 0.080 3.920
22 N -0.888 5.888
23 Si 0.885 3.115
24 H -0.275 1.275
25 H -0.262 1.262
26 H -0.293 1.293
27 C -0.122 4.122
28 H 0.070 0.930
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.048 0.952
32 H 0.048 0.952
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.123 0.877
36 H 0.129 0.871
37 H 0.137 0.863
38 H 0.423 0.577
39 H 0.409 0.591
40 H 0.037 0.963
41 H 0.051 0.949
42 H 0.057 0.943
43 H 0.269 0.731
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.075 -19.430 -14.419 28.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.021 4.021
3 O -0.302 6.302
4 C 0.030 3.970
5 C -0.076 4.076
6 C -0.133 4.133
7 C -0.120 4.120
8 C -0.133 4.133
9 C 0.054 3.946
10 N -0.298 5.298
11 C 0.292 3.708
12 O -0.373 6.373
13 C 0.276 3.724
14 O -0.414 6.414
15 N -0.309 5.309
16 C 0.132 3.868
17 H 0.072 0.928
18 C -0.221 4.221
19 C -0.577 4.577
20 H 0.101 0.899
21 C -0.124 4.124
22 N -0.524 5.524
23 Si 0.715 3.285
24 H -0.202 1.202
25 H -0.186 1.186
26 H -0.220 1.220
27 C -0.142 4.142
28 H 0.089 0.911
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.141 0.859
36 H 0.147 0.853
37 H 0.155 0.845
38 H 0.261 0.739
39 H 0.245 0.755
40 H 0.056 0.944
41 H 0.070 0.930
42 H 0.076 0.924
43 H 0.079 0.921
44 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -15.002 -19.057 -14.235 28.122
hybrid contribution -0.307 0.077 0.790 0.851
sum -15.309 -18.980 -13.444 27.846
Atomic orbital electron populations
1.21744 0.93655 1.02219 1.03288 1.22480 0.95716 0.83804 1.00089
1.87992 1.20463 1.26364 1.95422 1.21277 0.81804 0.92931 1.01019
1.19269 1.00682 0.94728 0.92916 1.21008 1.00231 0.94747 0.97327
1.21020 0.98863 0.94318 0.97817 1.21263 1.00102 1.01084 0.90867
1.17701 1.00248 0.91058 0.85639 1.43227 1.38248 1.35357 1.12991
1.20799 0.79994 0.80750 0.89272 1.90760 1.40757 1.66357 1.39424
1.19697 0.83151 0.82487 0.87074 1.90731 1.43110 1.68885 1.38706
1.46132 1.33142 1.31931 1.19735 1.19324 0.96246 0.88799 0.82463
0.92796 1.22468 0.98337 0.99833 1.01459 1.20990 0.94202 1.32708
1.09812 0.89862 1.24823 0.95419 0.94704 0.97494 1.69866 1.18261
1.33902 1.30390 0.86879 0.81292 0.79521 0.80828 1.20172 1.18639
1.21991 1.20768 1.02988 0.91975 0.98487 0.91109 0.91754 0.91819
0.93392 0.93332 0.92266 0.92326 0.85875 0.85322 0.84484 0.73885
0.75536 0.94356 0.93019 0.92421 0.92140 0.85392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16
2 C 0.06 0.37 6.66 37.16 0.25 0.61 16
3 O -0.38 -3.62 10.33 -35.23 -0.36 -3.99 16
4 C 0.11 0.87 6.06 36.01 0.22 1.08 16
5 C -0.08 -0.76 5.51 -104.65 -0.58 -1.34 16
6 C -0.11 -1.10 9.70 -39.54 -0.38 -1.49 16
7 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16
8 C -0.11 -1.44 8.65 -39.37 -0.34 -1.78 16
9 C 0.15 1.88 6.27 -83.75 -0.53 1.35 16
10 N -0.65 -8.74 5.32 -10.29 -0.05 -8.79 16
11 C 0.51 8.26 7.62 -11.63 -0.09 8.17 16
12 O -0.50 -8.77 14.17 5.48 0.08 -8.69 16
13 C 0.50 9.33 7.85 -11.63 -0.09 9.24 16
14 O -0.54 -10.94 16.15 5.49 0.09 -10.85 16
15 N -0.66 -13.38 5.06 -55.39 -0.28 -13.66 16
16 C 0.23 5.47 2.15 -69.08 -0.15 5.33 16
17 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16
18 C -0.16 -3.53 8.96 37.16 0.33 -3.19 16
19 C -0.54 -14.43 9.31 -34.44 -0.32 -14.75 16
20 H 0.08 2.37 7.98 -52.48 -0.42 1.95 16
21 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16
22 N -0.89 -25.99 13.96 55.43 0.77 -25.21 16
23 Si 0.89 21.17 24.37 -169.99 -4.14 17.03 16
24 H -0.27 -6.36 6.88 56.52 0.39 -5.97 16
25 H -0.26 -6.14 6.52 56.52 0.37 -5.77 16
26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
27 C -0.12 -1.33 9.62 -39.38 -0.38 -1.71 16
28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16
32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16
33 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16
34 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16
35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16
36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
37 H 0.14 1.88 6.43 -52.49 -0.34 1.54 16
38 H 0.42 5.00 8.30 -40.82 -0.34 4.66 16
39 H 0.41 7.86 8.01 -40.82 -0.33 7.53 16
40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
41 H 0.05 1.15 3.28 -51.93 -0.17 0.98 16
42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
LS Contribution 370.26 15.07 5.58 5.58
Total: -1.00 -31.39 370.26 -6.67 -38.07
By element:
Atomic # 1 Polarization: 15.00 SS G_CDS: -6.19 Total: 8.82 kcal
Atomic # 6 Polarization: 3.86 SS G_CDS: -2.17 Total: 1.70 kcal
Atomic # 7 Polarization: -48.10 SS G_CDS: 0.44 Total: -47.66 kcal
Atomic # 8 Polarization: -23.33 SS G_CDS: -0.20 Total: -23.53 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -31.39 -6.67 -38.07 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122826346.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.288 kcal
(2) G-P(sol) polarization free energy of solvation -31.394 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds