Wall clock time and date at job start Tue Mar 31 2020 13:01:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42901 * 109.46776 * 2 1
4 4 C 1.42901 * 114.00160 * 180.02562 * 3 2 1
5 5 C 1.50699 * 109.47308 * 179.97438 * 4 3 2
6 6 C 1.38316 * 119.96221 * 269.97344 * 5 4 3
7 7 C 1.38269 * 120.15512 * 179.97438 * 6 5 4
8 8 C 1.38123 * 120.07370 * 359.75461 * 7 6 5
9 9 C 1.38910 * 119.92159 * 0.52269 * 8 7 6
10 10 N 1.39721 * 120.07690 * 179.75085 * 9 8 7
11 11 C 1.34777 * 119.99720 * 326.49776 * 10 9 8
12 12 O 1.21374 * 120.00047 * 354.72645 * 11 10 9
13 13 C 1.49358 * 119.99799 * 174.72510 * 11 10 9
14 14 O 1.21362 * 120.00139 * 359.97438 * 13 11 10
15 15 N 1.34777 * 119.99799 * 180.02562 * 13 11 10
16 16 C 1.46494 * 119.99727 * 179.97438 * 15 13 11
17 17 H 1.09003 * 109.47172 * 35.00307 * 16 15 13
18 18 C 1.53005 * 109.47534 * 275.00143 * 16 15 13
19 19 C 1.50696 * 109.47286 * 155.00161 * 16 15 13
20 20 H 1.08005 * 119.99749 * 0.02562 * 19 16 15
21 21 C 1.37880 * 120.00425 * 180.02562 * 19 16 15
22 22 N 1.31518 * 119.99797 * 179.72837 * 21 19 16
23 23 Si 1.86793 * 120.00040 * 359.97438 * 21 19 16
24 24 H 1.48500 * 109.47203 * 269.72826 * 23 21 19
25 25 H 1.48504 * 109.46985 * 29.72731 * 23 21 19
26 26 H 1.48502 * 109.47298 * 149.72354 * 23 21 19
27 27 C 1.38072 * 119.96002 * 90.00143 * 5 4 3
28 28 H 1.09001 * 109.46787 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47118 * 300.00106 * 1 2 3
30 30 H 1.08993 * 109.47031 * 60.00156 * 1 2 3
31 31 H 1.09000 * 109.47118 * 239.99894 * 2 1 3
32 32 H 1.08996 * 109.47327 * 119.99415 * 2 1 3
33 33 H 1.09004 * 109.46843 * 59.99400 * 4 3 2
34 34 H 1.09005 * 109.46944 * 300.00141 * 4 3 2
35 35 H 1.08006 * 119.91922 * 359.97438 * 6 5 4
36 36 H 1.07994 * 119.96220 * 180.02562 * 7 6 5
37 37 H 1.07997 * 120.03779 * 180.27109 * 8 7 6
38 38 H 0.97002 * 120.00479 * 146.49856 * 10 9 8
39 39 H 0.97000 * 119.99845 * 0.02562 * 15 13 11
40 40 H 1.09001 * 109.46893 * 59.99683 * 18 16 15
41 41 H 1.08998 * 109.47383 * 179.97438 * 18 16 15
42 42 H 1.08996 * 109.46674 * 300.00208 * 18 16 15
43 43 H 0.97004 * 119.99546 * 180.27460 * 22 21 19
44 44 H 1.07995 * 120.03958 * 0.02562 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4603 -0.0006
5 6 3.8193 2.9163 -0.0012
6 6 3.9975 3.5833 -1.1997
7 6 4.3534 4.9194 -1.2049
8 6 4.5273 5.5939 -0.0123
9 6 4.3549 4.9257 1.1933
10 7 4.5351 5.6036 2.4017
11 6 5.4576 6.5818 2.4944
12 8 6.1970 6.8094 1.5592
13 6 5.5700 7.3858 3.7481
14 8 4.8304 7.1586 4.6831
15 7 6.4922 8.3644 3.8407
16 6 6.6020 9.1533 5.0702
17 1 6.3903 8.5176 5.9300
18 6 5.5967 10.3059 5.0282
19 6 7.9981 9.7085 5.1878
20 1 8.7301 9.4953 4.4229
21 6 8.3408 10.4885 6.2718
22 7 9.5607 10.9686 6.3770
23 14 7.0745 10.8578 7.5944
24 1 6.3471 12.1054 7.2487
25 1 6.1106 9.7317 7.6850
26 1 7.7590 11.0297 8.9010
27 6 3.9976 3.5829 1.1948
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5137 0.8900
33 1 3.8332 0.9768 -0.8908
34 1 3.8340 0.9766 0.8892
35 1 3.8582 3.0591 -2.1338
36 1 4.4913 5.4371 -2.1426
37 1 4.8011 6.6386 -0.0170
38 1 3.9963 5.3703 3.1738
39 1 7.0826 8.5467 3.0930
40 1 4.5869 9.9043 4.9432
41 1 5.6781 10.8926 5.9432
42 1 5.8085 10.9415 4.1685
43 1 9.8029 11.5141 7.1417
44 1 3.8592 3.0613 2.1303
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122826346.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:01
Heat of formation + Delta-G solvation = -106.778057 kcal
Electronic energy + Delta-G solvation = -25715.267465 eV
Core-core repulsion = 21825.147017 eV
Total energy + Delta-G solvation = -3890.120448 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.17008 -40.64035 -39.58284 -38.58937 -37.19939 -36.04349 -34.43431 -33.30946
-31.93344 -31.57151 -30.89336 -27.30184 -26.97012 -26.48648 -23.63073 -23.58016
-23.31239 -21.94010 -21.18006 -20.23223 -18.64406 -18.36252 -17.71852 -17.53769
-17.32207 -17.18110 -17.04631 -16.74345 -16.10310 -15.77433 -15.54585 -15.24144
-14.99978 -14.82583 -14.59855 -14.15887 -14.09959 -13.94965 -13.76518 -13.46951
-13.28979 -13.27549 -12.96635 -12.78087 -12.50980 -12.31339 -12.16451 -12.13526
-12.08280 -11.60167 -11.45402 -11.35029 -10.90708 -10.71933 -10.54367 -10.15368
-9.89746 -9.26358 -8.39124 -6.47609 -0.10641 0.26912 0.57197 1.22715
1.29854 1.37396 1.46592 2.03637 2.25784 2.54710 2.61808 2.96231
3.09342 3.35570 3.79497 3.88073 4.09669 4.20771 4.26949 4.30977
4.36122 4.38041 4.42442 4.49899 4.53753 4.55108 4.61316 4.63801
4.89274 4.90482 4.94694 5.06415 5.14337 5.19636 5.22025 5.29857
5.31373 5.43394 5.45120 5.54956 5.80213 5.96387 6.08399 6.27625
6.44527 6.54053 6.67655 6.90721 7.19699 8.76101
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.027132 B = 0.002177 C = 0.002083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.730400 B =12858.254352 C =13438.581538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.049 3.951
3 O -0.407 6.407
4 C 0.105 3.895
5 C -0.080 4.080
6 C -0.109 4.109
7 C -0.104 4.104
8 C -0.132 4.132
9 C 0.122 3.878
10 N -0.635 5.635
11 C 0.517 3.483
12 O -0.517 6.517
13 C 0.502 3.498
14 O -0.550 6.550
15 N -0.666 5.666
16 C 0.239 3.761
17 H 0.040 0.960
18 C -0.158 4.158
19 C -0.541 4.541
20 H 0.053 0.947
21 C 0.028 3.972
22 N -0.932 5.932
23 Si 0.943 3.057
24 H -0.258 1.258
25 H -0.254 1.254
26 H -0.292 1.292
27 C -0.122 4.122
28 H 0.089 0.911
29 H 0.053 0.947
30 H 0.057 0.943
31 H 0.062 0.938
32 H 0.057 0.943
33 H 0.078 0.922
34 H 0.069 0.931
35 H 0.150 0.850
36 H 0.150 0.850
37 H 0.121 0.879
38 H 0.430 0.570
39 H 0.413 0.587
40 H 0.054 0.946
41 H 0.048 0.952
42 H 0.064 0.936
43 H 0.272 0.728
44 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.095 -21.227 -15.249 31.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.027 4.027
3 O -0.327 6.327
4 C 0.030 3.970
5 C -0.081 4.081
6 C -0.127 4.127
7 C -0.122 4.122
8 C -0.152 4.152
9 C 0.029 3.971
10 N -0.282 5.282
11 C 0.299 3.701
12 O -0.392 6.392
13 C 0.281 3.719
14 O -0.429 6.429
15 N -0.316 5.316
16 C 0.136 3.864
17 H 0.058 0.942
18 C -0.216 4.216
19 C -0.579 4.579
20 H 0.071 0.929
21 C -0.172 4.172
22 N -0.570 5.570
23 Si 0.769 3.231
24 H -0.183 1.183
25 H -0.178 1.178
26 H -0.219 1.219
27 C -0.142 4.142
28 H 0.108 0.892
29 H 0.073 0.927
30 H 0.076 0.924
31 H 0.080 0.920
32 H 0.075 0.925
33 H 0.097 0.903
34 H 0.087 0.913
35 H 0.168 0.832
36 H 0.167 0.833
37 H 0.139 0.861
38 H 0.270 0.730
39 H 0.249 0.751
40 H 0.073 0.927
41 H 0.066 0.934
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -17.060 -20.893 -15.091 30.908
hybrid contribution 0.310 0.486 0.919 1.085
sum -16.751 -20.407 -14.172 29.964
Atomic orbital electron populations
1.21775 0.93377 1.03256 1.02500 1.22668 0.96012 0.82785 1.01188
1.87952 1.21011 1.28127 1.95652 1.21347 0.81562 0.91627 1.02514
1.19615 0.99894 0.95916 0.92681 1.21368 0.98555 0.94404 0.98404
1.21287 0.98218 0.94864 0.97837 1.21303 1.01277 1.00711 0.91948
1.17883 1.02224 0.91933 0.85048 1.43062 1.37134 1.34212 1.13773
1.20173 0.80697 0.81291 0.87905 1.90762 1.41745 1.67163 1.39489
1.20029 0.82142 0.81901 0.87780 1.90714 1.43491 1.69144 1.39589
1.45970 1.34083 1.32522 1.18990 1.19038 0.94709 0.89373 0.83317
0.94235 1.22371 0.98525 0.99059 1.01634 1.21186 0.95453 1.32344
1.08925 0.92920 1.25621 0.97179 0.94630 0.99756 1.69988 1.20313
1.35223 1.31505 0.85945 0.79077 0.80163 0.77902 1.18345 1.17811
1.21926 1.20967 1.02274 0.91239 0.99727 0.89198 0.92735 0.92386
0.91992 0.92475 0.90348 0.91311 0.83231 0.83251 0.86117 0.73049
0.75114 0.92711 0.93350 0.91667 0.91903 0.84001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16
2 C 0.05 0.53 6.66 71.98 0.48 1.01 16
3 O -0.41 -6.77 10.33 -148.98 -1.54 -8.31 16
4 C 0.11 1.43 6.06 71.24 0.43 1.86 16
5 C -0.08 -1.44 5.51 -19.89 -0.11 -1.55 16
6 C -0.11 -1.82 9.70 22.30 0.22 -1.61 16
7 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16
8 C -0.13 -3.29 8.65 22.40 0.19 -3.10 16
9 C 0.12 3.02 6.27 38.22 0.24 3.26 16
10 N -0.63 -16.68 5.32 -304.83 -1.62 -18.31 16
11 C 0.52 16.72 7.62 87.24 0.66 17.39 16
12 O -0.52 -18.27 14.17 -3.32 -0.05 -18.32 16
13 C 0.50 18.70 7.85 87.24 0.68 19.38 16
14 O -0.55 -22.06 16.15 -3.28 -0.05 -22.12 16
15 N -0.67 -27.14 5.06 -447.53 -2.27 -29.40 16
16 C 0.24 11.14 2.15 44.25 0.10 11.24 16
17 H 0.04 1.97 6.63 -2.39 -0.02 1.95 16
18 C -0.16 -6.61 8.96 71.98 0.64 -5.96 16
19 C -0.54 -29.51 9.31 25.60 0.24 -29.27 16
20 H 0.05 3.12 7.98 -2.91 -0.02 3.10 16
21 C 0.03 1.58 5.45 84.65 0.46 2.04 16
22 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16
23 Si 0.94 43.27 24.37 68.60 1.67 44.94 16
24 H -0.26 -11.08 6.88 99.48 0.68 -10.40 16
25 H -0.25 -11.25 6.52 99.48 0.65 -10.61 16
26 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16
27 C -0.12 -2.48 9.62 22.40 0.22 -2.26 16
28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16
32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
33 H 0.08 0.76 8.08 -2.38 -0.02 0.74 16
34 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16
35 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16
36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16
37 H 0.12 3.36 6.43 -2.91 -0.02 3.34 16
38 H 0.43 9.82 8.30 -92.71 -0.77 9.05 16
39 H 0.41 16.20 8.01 -92.71 -0.74 15.46 16
40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
41 H 0.05 2.05 3.28 -2.39 -0.01 2.04 16
42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16
43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
44 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16
Total: -1.00 -67.57 370.26 1.31 -66.26
By element:
Atomic # 1 Polarization: 31.23 SS G_CDS: -0.55 Total: 30.67 kcal
Atomic # 6 Polarization: 4.52 SS G_CDS: 5.42 Total: 9.94 kcal
Atomic # 7 Polarization: -99.47 SS G_CDS: -3.59 Total: -103.06 kcal
Atomic # 8 Polarization: -47.11 SS G_CDS: -1.64 Total: -48.75 kcal
Atomic # 14 Polarization: 43.27 SS G_CDS: 1.67 Total: 44.94 kcal
Total: -67.57 1.31 -66.26 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122826346.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.519 kcal
(2) G-P(sol) polarization free energy of solvation -67.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds