Wall clock time and date at job start Tue Mar 31 2020 12:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46751 * 2 1 4 4 C 1.35962 * 116.99923 * 179.97438 * 3 2 1 5 5 C 1.38543 * 120.08580 * 359.97438 * 4 3 2 6 6 C 1.38248 * 120.01997 * 180.02562 * 5 4 3 7 7 C 1.38301 * 120.19189 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.17554 * 0.02562 * 7 6 5 9 9 C 1.38791 * 119.97632 * 359.97438 * 8 7 6 10 10 N 1.39879 * 120.09718 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99964 * 23.51361 * 10 9 8 12 12 O 1.21383 * 119.99730 * 5.73803 * 11 10 9 13 13 C 1.49337 * 120.00071 * 185.74098 * 11 10 9 14 14 O 1.21367 * 119.99829 * 0.56160 * 13 11 10 15 15 N 1.34770 * 119.99972 * 180.56153 * 13 11 10 16 16 C 1.46499 * 119.99978 * 174.71328 * 15 13 11 17 17 C 1.53003 * 109.46879 * 94.85043 * 16 15 13 18 18 C 1.46504 * 119.99857 * 354.71396 * 15 13 11 19 19 C 1.50699 * 109.47128 * 83.29520 * 18 15 13 20 20 H 1.08003 * 119.99955 * 0.02562 * 19 18 15 21 21 C 1.37875 * 119.99863 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99765 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47317 * 90.00543 * 23 21 19 25 25 H 1.48503 * 109.47326 * 210.00429 * 23 21 19 26 26 H 1.48500 * 109.47356 * 330.00365 * 23 21 19 27 27 H 1.09006 * 109.46513 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47402 * 299.99588 * 1 2 3 29 29 H 1.08997 * 109.47347 * 60.00436 * 1 2 3 30 30 H 1.08994 * 109.47402 * 240.00412 * 2 1 3 31 31 H 1.08997 * 109.47347 * 119.99564 * 2 1 3 32 32 H 1.08005 * 119.99554 * 0.02562 * 5 4 3 33 33 H 1.07999 * 119.90541 * 180.26822 * 6 5 4 34 34 H 1.08001 * 119.91476 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.01161 * 180.02562 * 8 7 6 36 36 H 0.96996 * 120.00327 * 203.51997 * 10 9 8 37 37 H 1.08998 * 109.47216 * 214.84622 * 16 15 13 38 38 H 1.08997 * 109.46985 * 334.85113 * 16 15 13 39 39 H 1.08999 * 109.47204 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47329 * 299.99890 * 17 16 15 41 41 H 1.08997 * 109.47255 * 60.00236 * 17 16 15 42 42 H 1.09008 * 109.47015 * 203.29278 * 18 15 13 43 43 H 1.08994 * 109.47309 * 323.29163 * 18 15 13 44 44 H 0.96996 * 119.99741 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3541 1.5256 0.0005 5 6 4.1998 0.4282 0.0016 6 6 5.5701 0.6109 0.0027 7 6 6.1015 1.8878 0.0022 8 6 5.2655 2.9879 0.0011 9 6 3.8887 2.8127 0.0000 10 7 3.0401 3.9246 -0.0016 11 6 3.4825 5.1093 -0.4678 12 8 4.5794 5.1880 -0.9816 13 6 2.6232 6.3252 -0.3521 14 8 1.5306 6.2487 0.1708 15 7 3.0609 7.5075 -0.8285 16 6 2.1745 8.6739 -0.8205 17 6 2.4294 9.4994 0.4423 18 6 4.4231 7.6263 -1.3543 19 6 4.4507 7.1611 -2.7875 20 1 3.5441 6.8124 -3.2596 21 6 5.6331 7.1818 -3.4963 22 7 6.7370 7.6070 -2.9216 23 14 5.6674 6.6046 -5.2726 24 1 5.3967 7.7547 -6.1721 25 1 7.0042 6.0373 -5.5831 26 1 4.6286 5.5629 -5.4747 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5705 0.0016 33 1 6.2276 -0.2458 -0.0009 34 1 7.1727 2.0254 0.0035 35 1 5.6833 3.9839 0.0003 36 1 2.1333 3.8432 0.3329 37 1 2.3715 9.2860 -1.7006 38 1 1.1365 8.3415 -0.8340 39 1 1.7702 10.3675 0.4481 40 1 2.2324 8.8873 1.3225 41 1 3.4673 9.8318 0.4558 42 1 4.7426 8.6673 -1.3040 43 1 5.0973 7.0102 -0.7594 44 1 7.5689 7.6212 -3.4202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123928110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:38 Heat of formation + Delta-G solvation = -62.587804 kcal Electronic energy + Delta-G solvation = -27556.792653 eV Core-core repulsion = 23668.588438 eV Total energy + Delta-G solvation = -3888.204215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73848 -39.70331 -38.17440 -37.03738 -35.68897 -34.18914 -32.62690 -31.90699 -30.49518 -30.01363 -28.95448 -27.03728 -24.90209 -24.20705 -23.04427 -22.49434 -21.84412 -20.88216 -19.12983 -18.29297 -17.26338 -16.77589 -16.55349 -16.20347 -15.84999 -15.57918 -15.06122 -14.75785 -14.67292 -14.20281 -14.03247 -13.80463 -13.51743 -13.30149 -13.09596 -12.94543 -12.74996 -12.32318 -12.10122 -12.05357 -11.89951 -11.64810 -11.56480 -11.45570 -11.08052 -10.90434 -10.82299 -10.78205 -10.57584 -10.42304 -10.15434 -9.94292 -9.65376 -8.67669 -8.41219 -8.24099 -7.86327 -7.54509 -6.00450 -4.01760 1.37236 1.54909 2.25537 2.91390 3.14368 3.32727 3.39392 3.44257 3.79202 4.10069 4.15555 4.48871 4.74363 4.75548 4.94556 5.01649 5.06112 5.07669 5.29262 5.36549 5.42946 5.54579 5.57597 5.61114 5.70904 5.73492 5.81552 5.85669 6.01026 6.17297 6.24898 6.30634 6.39546 6.57242 6.64937 6.71356 6.75626 7.00417 7.35369 7.39323 7.50668 7.66030 7.88890 8.11546 8.21701 8.40728 8.71518 8.98007 9.60645 11.08533 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.004618 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.961292 B = 6061.401222 C = 7426.657620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.092 3.908 5 C -0.190 4.190 6 C -0.109 4.109 7 C -0.130 4.130 8 C -0.098 4.098 9 C 0.137 3.863 10 N -0.650 5.650 11 C 0.487 3.513 12 O -0.430 6.430 13 C 0.508 3.492 14 O -0.560 6.560 15 N -0.559 5.559 16 C 0.111 3.889 17 C -0.164 4.164 18 C 0.230 3.770 19 C -0.512 4.512 20 H 0.053 0.947 21 C 0.070 3.930 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.419 0.581 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -12.110 7.974 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.232 6.232 4 C 0.045 3.955 5 C -0.210 4.210 6 C -0.128 4.128 7 C -0.149 4.149 8 C -0.119 4.119 9 C 0.041 3.959 10 N -0.298 5.298 11 C 0.269 3.731 12 O -0.298 6.298 13 C 0.290 3.710 14 O -0.442 6.442 15 N -0.290 5.290 16 C -0.012 4.012 17 C -0.222 4.222 18 C 0.111 3.889 19 C -0.551 4.551 20 H 0.071 0.929 21 C -0.132 4.132 22 N -0.530 5.530 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.176 0.824 36 H 0.256 0.744 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.723 -11.770 7.801 15.639 hybrid contribution -0.185 -0.686 -1.046 1.265 sum -6.908 -12.456 6.755 15.764 Atomic orbital electron populations 1.21776 0.92843 1.02633 1.03733 1.22724 0.95741 0.82077 1.01174 1.86026 1.18700 1.29165 1.89296 1.18619 0.82580 0.92505 1.01763 1.20941 0.94195 0.97094 1.08739 1.20867 0.94097 0.97306 1.00565 1.21003 1.00001 0.91836 1.02045 1.21504 0.90385 1.01684 0.98286 1.17169 0.90372 0.83685 1.04655 1.43077 1.16889 1.07461 1.62359 1.20406 0.88330 0.84372 0.79999 1.90934 1.19534 1.83620 1.35735 1.19738 0.86205 0.84771 0.80291 1.90652 1.22177 1.85902 1.45447 1.48299 1.17135 1.07242 1.56289 1.21432 0.94537 0.86844 0.98417 1.22103 1.02113 0.99610 0.98348 1.19925 0.75372 0.98352 0.95259 1.21189 0.94792 1.43255 0.95851 0.92892 1.24768 0.95288 0.95045 0.98073 1.69909 0.99373 1.46998 1.36725 0.86593 0.77403 0.78874 0.85089 1.20806 1.21143 1.20102 0.90556 0.91446 0.91413 0.92175 0.92210 0.85553 0.86059 0.85550 0.82402 0.74399 0.89952 0.90585 0.92067 0.92698 0.92209 0.94899 0.91802 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.38 9.54 -19.62 -0.19 -4.57 16 4 C 0.09 1.39 6.70 -39.05 -0.26 1.13 16 5 C -0.19 -2.42 9.04 -39.46 -0.36 -2.77 16 6 C -0.11 -1.37 10.04 -39.55 -0.40 -1.77 16 7 C -0.13 -1.88 10.04 -39.58 -0.40 -2.28 16 8 C -0.10 -1.71 8.73 -39.40 -0.34 -2.06 16 9 C 0.14 2.38 6.46 -83.56 -0.54 1.84 16 10 N -0.65 -11.87 5.28 -10.19 -0.05 -11.92 16 11 C 0.49 10.33 7.53 -11.64 -0.09 10.24 16 12 O -0.43 -10.28 9.21 5.47 0.05 -10.23 16 13 C 0.51 10.91 7.67 -11.64 -0.09 10.82 16 14 O -0.56 -12.01 16.04 5.48 0.09 -11.93 16 15 N -0.56 -12.07 2.48 -175.61 -0.43 -12.50 16 16 C 0.11 1.98 6.11 -4.04 -0.02 1.96 16 17 C -0.16 -2.50 10.24 37.16 0.38 -2.12 16 18 C 0.23 5.71 4.79 -5.19 -0.02 5.68 16 19 C -0.51 -14.03 7.76 -34.44 -0.27 -14.30 16 20 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 21 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 22 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 23 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.16 3.09 5.70 -52.49 -0.30 2.79 16 36 H 0.42 7.09 7.80 -40.82 -0.32 6.77 16 37 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 38 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.84 8.02 -51.92 -0.42 0.42 16 43 H 0.06 1.71 5.85 -51.93 -0.30 1.41 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -31.57 368.55 -7.38 -38.95 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.19 Total: 6.53 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.92 Total: 8.17 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.25 Total: -49.41 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.57 -7.38 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123928110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.636 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds