Wall clock time and date at job start Tue Mar 31 2020 12:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46751 * 2 1 4 4 C 1.35962 * 116.99923 * 179.97438 * 3 2 1 5 5 C 1.38543 * 120.08580 * 359.97438 * 4 3 2 6 6 C 1.38248 * 120.01997 * 180.02562 * 5 4 3 7 7 C 1.38301 * 120.19189 * 359.97438 * 6 5 4 8 8 C 1.38172 * 120.17554 * 0.02562 * 7 6 5 9 9 C 1.38791 * 119.97632 * 359.97438 * 8 7 6 10 10 N 1.39879 * 120.09718 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99964 * 23.51361 * 10 9 8 12 12 O 1.21383 * 119.99730 * 5.73803 * 11 10 9 13 13 C 1.49337 * 120.00071 * 185.74098 * 11 10 9 14 14 O 1.21367 * 119.99829 * 0.56160 * 13 11 10 15 15 N 1.34770 * 119.99972 * 180.56153 * 13 11 10 16 16 C 1.46499 * 119.99978 * 174.71328 * 15 13 11 17 17 C 1.53003 * 109.46879 * 94.85043 * 16 15 13 18 18 C 1.46504 * 119.99857 * 354.71396 * 15 13 11 19 19 C 1.50699 * 109.47128 * 83.29520 * 18 15 13 20 20 H 1.08003 * 119.99955 * 0.02562 * 19 18 15 21 21 C 1.37875 * 119.99863 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00165 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99765 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47317 * 90.00543 * 23 21 19 25 25 H 1.48503 * 109.47326 * 210.00429 * 23 21 19 26 26 H 1.48500 * 109.47356 * 330.00365 * 23 21 19 27 27 H 1.09006 * 109.46513 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47402 * 299.99588 * 1 2 3 29 29 H 1.08997 * 109.47347 * 60.00436 * 1 2 3 30 30 H 1.08994 * 109.47402 * 240.00412 * 2 1 3 31 31 H 1.08997 * 109.47347 * 119.99564 * 2 1 3 32 32 H 1.08005 * 119.99554 * 0.02562 * 5 4 3 33 33 H 1.07999 * 119.90541 * 180.26822 * 6 5 4 34 34 H 1.08001 * 119.91476 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.01161 * 180.02562 * 8 7 6 36 36 H 0.96996 * 120.00327 * 203.51997 * 10 9 8 37 37 H 1.08998 * 109.47216 * 214.84622 * 16 15 13 38 38 H 1.08997 * 109.46985 * 334.85113 * 16 15 13 39 39 H 1.08999 * 109.47204 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47329 * 299.99890 * 17 16 15 41 41 H 1.08997 * 109.47255 * 60.00236 * 17 16 15 42 42 H 1.09008 * 109.47015 * 203.29278 * 18 15 13 43 43 H 1.08994 * 109.47309 * 323.29163 * 18 15 13 44 44 H 0.96996 * 119.99741 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3541 1.5256 0.0005 5 6 4.1998 0.4282 0.0016 6 6 5.5701 0.6109 0.0027 7 6 6.1015 1.8878 0.0022 8 6 5.2655 2.9879 0.0011 9 6 3.8887 2.8127 0.0000 10 7 3.0401 3.9246 -0.0016 11 6 3.4825 5.1093 -0.4678 12 8 4.5794 5.1880 -0.9816 13 6 2.6232 6.3252 -0.3521 14 8 1.5306 6.2487 0.1708 15 7 3.0609 7.5075 -0.8285 16 6 2.1745 8.6739 -0.8205 17 6 2.4294 9.4994 0.4423 18 6 4.4231 7.6263 -1.3543 19 6 4.4507 7.1611 -2.7875 20 1 3.5441 6.8124 -3.2596 21 6 5.6331 7.1818 -3.4963 22 7 6.7370 7.6070 -2.9216 23 14 5.6674 6.6046 -5.2726 24 1 5.3967 7.7547 -6.1721 25 1 7.0042 6.0373 -5.5831 26 1 4.6286 5.5629 -5.4747 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5705 0.0016 33 1 6.2276 -0.2458 -0.0009 34 1 7.1727 2.0254 0.0035 35 1 5.6833 3.9839 0.0003 36 1 2.1333 3.8432 0.3329 37 1 2.3715 9.2860 -1.7006 38 1 1.1365 8.3415 -0.8340 39 1 1.7702 10.3675 0.4481 40 1 2.2324 8.8873 1.3225 41 1 3.4673 9.8318 0.4558 42 1 4.7426 8.6673 -1.3040 43 1 5.0973 7.0102 -0.7594 44 1 7.5689 7.6212 -3.4202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123928110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:37 Heat of formation + Delta-G solvation = -82.217886 kcal Electronic energy + Delta-G solvation = -27557.643877 eV Core-core repulsion = 23668.588438 eV Total energy + Delta-G solvation = -3889.055439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17874 -41.04362 -39.64725 -38.25794 -37.37435 -35.65582 -34.67785 -32.69337 -32.06171 -31.18983 -30.11557 -29.02392 -26.41844 -25.14640 -25.01327 -23.81838 -22.89485 -22.20938 -20.67566 -19.49519 -18.83701 -18.45217 -18.26015 -17.44624 -17.13722 -16.91923 -16.71998 -16.40576 -15.98429 -15.71898 -15.43706 -15.17222 -14.87771 -14.49673 -14.36039 -14.29688 -14.19495 -13.65577 -13.44247 -13.37292 -13.16857 -13.09347 -12.89346 -12.72383 -12.65944 -12.54975 -12.30758 -12.09986 -11.96699 -11.80137 -11.68998 -11.62777 -11.51242 -10.59961 -10.13470 -9.66072 -9.57297 -8.79139 -8.13975 -6.21494 0.05608 0.41363 0.72254 1.36396 1.38613 1.40688 1.48367 2.17504 2.21984 2.40418 2.62854 2.84452 3.19963 3.39227 3.84505 3.98660 4.09445 4.13782 4.23165 4.24496 4.33761 4.39682 4.46153 4.50510 4.52661 4.68676 4.75040 4.91681 4.94300 4.96349 5.00916 5.08254 5.22301 5.25289 5.29769 5.34901 5.46406 5.55286 5.62534 5.76113 5.84612 6.09036 6.14630 6.30540 6.42426 6.76976 6.83093 7.08279 7.43864 8.94410 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.004618 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.961292 B = 6061.401222 C = 7426.657620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.336 6.336 4 C 0.095 3.905 5 C -0.184 4.184 6 C -0.092 4.092 7 C -0.140 4.140 8 C -0.120 4.120 9 C 0.098 3.902 10 N -0.637 5.637 11 C 0.484 3.516 12 O -0.467 6.467 13 C 0.504 3.496 14 O -0.561 6.561 15 N -0.564 5.564 16 C 0.103 3.897 17 C -0.153 4.153 18 C 0.249 3.751 19 C -0.517 4.517 20 H 0.041 0.959 21 C 0.025 3.975 22 N -0.919 5.919 23 Si 0.949 3.051 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.423 0.577 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.024 0.976 43 H 0.042 0.958 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 -14.517 7.838 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.251 6.251 4 C 0.047 3.953 5 C -0.203 4.203 6 C -0.111 4.111 7 C -0.159 4.159 8 C -0.141 4.141 9 C 0.003 3.997 10 N -0.284 5.284 11 C 0.266 3.734 12 O -0.338 6.338 13 C 0.287 3.713 14 O -0.443 6.443 15 N -0.294 5.294 16 C -0.019 4.019 17 C -0.211 4.211 18 C 0.129 3.871 19 C -0.556 4.556 20 H 0.059 0.941 21 C -0.174 4.174 22 N -0.559 5.559 23 Si 0.775 3.225 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.261 0.739 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.572 -14.194 7.686 17.829 hybrid contribution -0.010 -0.087 -0.929 0.933 sum -7.583 -14.282 6.757 17.525 Atomic orbital electron populations 1.21819 0.91813 1.04225 1.02926 1.23108 0.96638 0.80342 1.02679 1.86024 1.18009 1.32019 1.89034 1.18721 0.83644 0.92029 1.00870 1.21396 0.94034 0.97974 1.06888 1.21325 0.94720 0.97448 0.97596 1.21234 1.00500 0.92043 1.02137 1.21364 0.91178 1.01331 1.00195 1.17415 0.90355 0.84340 1.07588 1.42915 1.17098 1.07120 1.61313 1.20441 0.87881 0.85133 0.79980 1.90929 1.20749 1.84220 1.37874 1.19878 0.86269 0.84981 0.80197 1.90631 1.22093 1.85984 1.45549 1.48297 1.16512 1.08480 1.56157 1.21707 0.94091 0.86024 1.00048 1.22027 1.02474 1.00197 0.96441 1.19441 0.76808 0.96879 0.93952 1.21330 0.94359 1.42909 0.96970 0.94114 1.25461 0.95031 0.95242 1.01711 1.70003 0.99799 1.48013 1.38108 0.85706 0.77162 0.78583 0.81036 1.19269 1.20695 1.20737 0.87727 0.91890 0.92608 0.90987 0.90161 0.81812 0.82034 0.84163 0.85686 0.73908 0.89623 0.89918 0.88596 0.93367 0.92982 0.95794 0.94027 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.76 5.46 71.98 0.39 1.16 16 3 O -0.34 -8.82 9.54 -93.12 -0.89 -9.71 16 4 C 0.09 2.73 6.70 22.62 0.15 2.88 16 5 C -0.18 -4.07 9.04 22.35 0.20 -3.86 16 6 C -0.09 -2.02 10.04 22.29 0.22 -1.80 16 7 C -0.14 -3.97 10.04 22.27 0.22 -3.75 16 8 C -0.12 -4.38 8.73 22.39 0.20 -4.18 16 9 C 0.10 3.48 6.46 38.26 0.25 3.73 16 10 N -0.64 -24.28 5.28 -304.49 -1.61 -25.89 16 11 C 0.48 21.63 7.53 87.23 0.66 22.29 16 12 O -0.47 -23.78 9.21 -3.35 -0.03 -23.81 16 13 C 0.50 22.42 7.67 87.24 0.67 23.09 16 14 O -0.56 -24.38 16.04 -3.30 -0.05 -24.43 16 15 N -0.56 -25.09 2.48 -827.86 -2.05 -27.14 16 16 C 0.10 3.69 6.11 86.38 0.53 4.22 16 17 C -0.15 -4.59 10.24 71.98 0.74 -3.85 16 18 C 0.25 12.92 4.79 85.63 0.41 13.33 16 19 C -0.52 -29.17 7.76 25.60 0.20 -28.97 16 20 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 21 C 0.03 1.43 5.46 84.65 0.46 1.89 16 22 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 23 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 27 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 31 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.16 2.36 6.30 -2.91 -0.02 2.34 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.13 5.36 5.70 -2.91 -0.02 5.34 16 36 H 0.42 14.83 7.80 -92.71 -0.72 14.11 16 37 H 0.09 2.99 8.11 -2.39 -0.02 2.97 16 38 H 0.08 2.85 7.36 -2.39 -0.02 2.83 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.02 1.27 8.02 -2.38 -0.02 1.26 16 43 H 0.04 2.37 5.85 -2.39 -0.01 2.36 16 44 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.54 368.55 4.02 -66.52 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.30 Total: 26.08 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 6.04 Total: 24.84 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.37 Total: -107.07 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.97 Total: -57.95 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -70.54 4.02 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123928110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.697 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds