Wall clock time and date at job start Tue Mar 31 2020 12:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46964 * 2 1 4 4 C 1.46504 * 120.00009 * 274.85059 * 3 2 1 5 5 C 1.50698 * 109.47045 * 263.30586 * 4 3 2 6 6 H 1.08004 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00551 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47409 * 89.99317 * 9 7 5 11 11 H 1.48500 * 109.47351 * 209.99855 * 9 7 5 12 12 H 1.48505 * 109.46636 * 329.99714 * 9 7 5 13 13 C 1.34774 * 119.99985 * 94.85602 * 3 2 1 14 14 O 1.21364 * 119.99779 * 354.70876 * 13 3 2 15 15 C 1.49329 * 120.00386 * 174.71433 * 13 3 2 16 16 O 1.21391 * 119.99675 * 0.56639 * 15 13 3 17 17 N 1.34778 * 120.00253 * 180.56033 * 15 13 3 18 18 C 1.39871 * 119.99584 * 185.73529 * 17 15 13 19 19 C 1.38936 * 120.02808 * 23.75212 * 18 17 15 20 20 C 1.38033 * 119.98435 * 180.29997 * 19 18 17 21 21 C 1.38769 * 120.01708 * 359.95154 * 20 19 18 22 22 O 1.35958 * 119.97806 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99915 * 0.02562 * 22 21 20 24 24 C 1.38732 * 120.04428 * 0.04573 * 21 20 19 25 25 C 1.38079 * 120.01880 * 359.97438 * 24 21 20 26 26 C 1.50693 * 120.01084 * 179.97438 * 25 24 21 27 27 H 1.08993 * 109.47041 * 59.99827 * 1 2 3 28 28 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46651 * 299.99552 * 1 2 3 30 30 H 1.08999 * 109.46577 * 239.99897 * 2 1 3 31 31 H 1.09000 * 109.46820 * 120.00456 * 2 1 3 32 32 H 1.09000 * 109.46934 * 23.30598 * 4 3 2 33 33 H 1.09001 * 109.46616 * 143.30963 * 4 3 2 34 34 H 0.96989 * 120.00369 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99870 * 5.73582 * 17 15 13 36 36 H 1.08002 * 120.00390 * 0.24985 * 19 18 17 37 37 H 1.07994 * 119.98836 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47011 * 299.99951 * 23 22 21 39 39 H 1.09002 * 109.46881 * 59.99722 * 23 22 21 40 40 H 1.08997 * 109.46921 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99111 * 179.97438 * 24 21 20 42 42 H 1.09008 * 109.47121 * 270.02588 * 26 25 24 43 43 H 1.09004 * 109.47253 * 30.01799 * 26 25 24 44 44 H 1.08997 * 109.47380 * 150.02663 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1614 2.1076 -1.2642 5 6 3.5905 2.0209 -1.7345 6 1 4.3193 1.4786 -1.1503 7 6 3.9676 2.6339 -2.9104 8 7 3.0802 3.2939 -3.6221 9 14 5.7389 2.5259 -3.4938 10 1 5.9042 1.3278 -4.3554 11 1 6.0796 3.7449 -4.2704 12 1 6.6412 2.4190 -2.3191 13 6 2.3361 1.9836 1.1630 14 8 2.1278 1.4177 2.2162 15 6 2.9444 3.3474 1.1558 16 8 3.1432 3.9176 0.1027 17 7 3.2726 3.9451 2.3183 18 6 3.7299 5.2669 2.3202 19 6 3.3998 6.1184 1.2731 20 6 3.8568 7.4209 1.2729 21 6 4.6448 7.8803 2.3186 22 8 5.0941 9.1635 2.3178 23 6 4.7159 9.9826 1.2096 24 6 4.9750 7.0309 3.3647 25 6 4.5191 5.7276 3.3664 26 6 4.8783 4.8049 4.5025 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5048 1.6654 -2.0136 33 1 1.8907 3.1529 -1.1152 34 1 3.3456 3.7254 -4.4492 35 1 3.1916 3.4586 3.1535 36 1 2.7865 5.7609 0.4592 37 1 3.6006 8.0826 0.4588 38 1 5.0907 9.5405 0.2865 39 1 3.6290 10.0526 1.1638 40 1 5.1390 10.9794 1.3335 41 1 5.5887 7.3892 4.1779 42 1 5.8088 4.2871 4.2697 43 1 5.0046 5.3857 5.4162 44 1 4.0815 4.0747 4.6433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124050708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:20 Heat of formation + Delta-G solvation = -62.160050 kcal Electronic energy + Delta-G solvation = -27515.195261 eV Core-core repulsion = 23627.009595 eV Total energy + Delta-G solvation = -3888.185666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74070 -39.75347 -38.45076 -37.13285 -35.64991 -33.92228 -32.66832 -32.41509 -30.51360 -29.61965 -27.39630 -27.01179 -26.58669 -24.74008 -23.10771 -22.87493 -21.53621 -20.68348 -19.23033 -17.72518 -17.49141 -16.86448 -16.62431 -15.92281 -15.84506 -15.68910 -15.12733 -14.81831 -14.27162 -14.17927 -14.03972 -13.80660 -13.65209 -13.33241 -13.05127 -12.98749 -12.71953 -12.36474 -12.19551 -12.03677 -11.96103 -11.80907 -11.68171 -11.55296 -11.28907 -10.95574 -10.88953 -10.69414 -10.59792 -10.45087 -9.98192 -9.72600 -9.67266 -8.75667 -8.60407 -8.28759 -7.90003 -7.41866 -6.03942 -4.05450 1.35995 1.51167 2.21583 2.90272 3.30023 3.32018 3.36767 3.41318 3.73555 4.04951 4.10943 4.45489 4.83135 4.93000 4.99993 5.07460 5.13416 5.17344 5.33089 5.38405 5.42806 5.44837 5.51485 5.60563 5.67314 5.73278 5.78262 5.87703 6.10461 6.13983 6.22187 6.26887 6.49799 6.53817 6.56013 6.61317 6.67194 6.99335 7.34585 7.36259 7.49212 7.60272 7.85129 8.07125 8.17763 8.35707 8.66516 8.94237 9.57124 11.05014 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004667 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.622856 B = 5998.285624 C = 7694.558014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.559 5.559 4 C 0.230 3.770 5 C -0.512 4.512 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.562 6.562 15 C 0.486 3.514 16 O -0.429 6.429 17 N -0.656 5.656 18 C 0.127 3.873 19 C -0.087 4.087 20 C -0.186 4.186 21 C 0.102 3.898 22 O -0.322 6.322 23 C 0.028 3.972 24 C -0.133 4.133 25 C -0.084 4.084 26 C -0.110 4.110 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.414 0.586 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 6.216 11.876 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.289 5.289 4 C 0.111 3.889 5 C -0.551 4.551 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.289 3.711 14 O -0.444 6.444 15 C 0.268 3.732 16 O -0.297 6.297 17 N -0.305 5.305 18 C 0.031 3.969 19 C -0.107 4.107 20 C -0.205 4.205 21 C 0.057 3.943 22 O -0.236 6.236 23 C -0.067 4.067 24 C -0.152 4.152 25 C -0.087 4.087 26 C -0.167 4.167 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.342 6.458 11.502 13.195 hybrid contribution 0.917 -0.165 -0.479 1.047 sum 0.574 6.293 11.023 12.705 Atomic orbital electron populations 1.22104 0.96209 1.01596 1.02279 1.21439 0.93995 0.82803 1.03015 1.48309 1.58831 1.13459 1.08286 1.19928 0.97723 0.93293 0.77979 1.21181 0.94210 1.33214 1.06481 0.92869 1.24774 0.97164 0.94824 0.96437 1.69904 1.33672 1.34385 1.15051 0.86594 0.85298 0.77397 0.78684 1.20763 1.21172 1.20060 1.19755 0.80237 0.86523 0.84542 1.90645 1.56284 1.66423 1.31032 1.20404 0.80956 0.88016 0.83841 1.90944 1.46148 1.63661 1.28919 1.43248 1.65078 1.11652 1.10477 1.17516 0.98330 0.84191 0.96819 1.21353 0.99208 0.91593 0.98592 1.21142 1.02840 0.97250 0.99308 1.18938 0.96089 0.84100 0.95196 1.86019 1.71717 1.20326 1.45513 1.23017 1.00586 0.94364 0.88773 1.19933 1.04385 0.91960 0.98920 1.19345 0.97661 0.94676 0.97011 1.20701 1.02040 0.98264 0.95719 0.92212 0.92034 0.92698 0.89931 0.90558 0.94885 0.91831 0.92883 0.74830 0.82804 0.85268 0.92560 0.92728 0.88588 0.85167 0.90733 0.91067 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.11 1.93 6.11 -4.04 -0.02 1.91 16 3 N -0.56 -11.78 2.48 -175.61 -0.43 -12.21 16 4 C 0.23 5.62 4.79 -5.19 -0.02 5.59 16 5 C -0.51 -13.84 7.76 -34.44 -0.27 -14.11 16 6 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 7 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 8 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 10.52 7.67 -11.64 -0.09 10.43 16 14 O -0.56 -11.54 16.04 5.48 0.09 -11.45 16 15 C 0.49 9.91 7.53 -11.64 -0.09 9.82 16 16 O -0.43 -10.04 9.22 5.46 0.05 -9.99 16 17 N -0.66 -11.04 5.17 -10.27 -0.05 -11.10 16 18 C 0.13 2.08 6.43 -83.68 -0.54 1.54 16 19 C -0.09 -1.52 8.72 -39.40 -0.34 -1.86 16 20 C -0.19 -2.83 9.03 -39.46 -0.36 -3.18 16 21 C 0.10 1.47 6.69 -39.20 -0.26 1.21 16 22 O -0.32 -4.21 10.50 -19.61 -0.21 -4.42 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C -0.13 -1.79 9.63 -39.46 -0.38 -2.17 16 25 C -0.08 -1.16 5.90 -104.44 -0.62 -1.78 16 26 C -0.11 -1.17 9.73 36.00 0.35 -0.82 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.08 1.30 7.36 -51.93 -0.38 0.91 16 32 H 0.03 0.83 8.02 -51.93 -0.42 0.42 16 33 H 0.06 1.68 5.85 -51.93 -0.30 1.38 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.41 6.06 6.37 -40.82 -0.26 5.80 16 36 H 0.15 3.00 5.72 -52.49 -0.30 2.70 16 37 H 0.13 1.73 6.29 -52.49 -0.33 1.40 16 38 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 39 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -31.48 365.45 -6.74 -38.22 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.04 Total: 5.89 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.36 Total: 7.61 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.25 Total: -48.12 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.07 Total: -25.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.48 -6.74 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124050708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.935 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds