Wall clock time and date at job start Tue Mar 31 2020 12:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46964 * 2 1 4 4 C 1.46504 * 120.00009 * 274.85059 * 3 2 1 5 5 C 1.50698 * 109.47045 * 263.30586 * 4 3 2 6 6 H 1.08004 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00551 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00181 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47409 * 89.99317 * 9 7 5 11 11 H 1.48500 * 109.47351 * 209.99855 * 9 7 5 12 12 H 1.48505 * 109.46636 * 329.99714 * 9 7 5 13 13 C 1.34774 * 119.99985 * 94.85602 * 3 2 1 14 14 O 1.21364 * 119.99779 * 354.70876 * 13 3 2 15 15 C 1.49329 * 120.00386 * 174.71433 * 13 3 2 16 16 O 1.21391 * 119.99675 * 0.56639 * 15 13 3 17 17 N 1.34778 * 120.00253 * 180.56033 * 15 13 3 18 18 C 1.39871 * 119.99584 * 185.73529 * 17 15 13 19 19 C 1.38936 * 120.02808 * 23.75212 * 18 17 15 20 20 C 1.38033 * 119.98435 * 180.29997 * 19 18 17 21 21 C 1.38769 * 120.01708 * 359.95154 * 20 19 18 22 22 O 1.35958 * 119.97806 * 180.02562 * 21 20 19 23 23 C 1.42904 * 116.99915 * 0.02562 * 22 21 20 24 24 C 1.38732 * 120.04428 * 0.04573 * 21 20 19 25 25 C 1.38079 * 120.01880 * 359.97438 * 24 21 20 26 26 C 1.50693 * 120.01084 * 179.97438 * 25 24 21 27 27 H 1.08993 * 109.47041 * 59.99827 * 1 2 3 28 28 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46651 * 299.99552 * 1 2 3 30 30 H 1.08999 * 109.46577 * 239.99897 * 2 1 3 31 31 H 1.09000 * 109.46820 * 120.00456 * 2 1 3 32 32 H 1.09000 * 109.46934 * 23.30598 * 4 3 2 33 33 H 1.09001 * 109.46616 * 143.30963 * 4 3 2 34 34 H 0.96989 * 120.00369 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99870 * 5.73582 * 17 15 13 36 36 H 1.08002 * 120.00390 * 0.24985 * 19 18 17 37 37 H 1.07994 * 119.98836 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47011 * 299.99951 * 23 22 21 39 39 H 1.09002 * 109.46881 * 59.99722 * 23 22 21 40 40 H 1.08997 * 109.46921 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.99111 * 179.97438 * 24 21 20 42 42 H 1.09008 * 109.47121 * 270.02588 * 26 25 24 43 43 H 1.09004 * 109.47253 * 30.01799 * 26 25 24 44 44 H 1.08997 * 109.47380 * 150.02663 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1614 2.1076 -1.2642 5 6 3.5905 2.0209 -1.7345 6 1 4.3193 1.4786 -1.1503 7 6 3.9676 2.6339 -2.9104 8 7 3.0802 3.2939 -3.6221 9 14 5.7389 2.5259 -3.4938 10 1 5.9042 1.3278 -4.3554 11 1 6.0796 3.7449 -4.2704 12 1 6.6412 2.4190 -2.3191 13 6 2.3361 1.9836 1.1630 14 8 2.1278 1.4177 2.2162 15 6 2.9444 3.3474 1.1558 16 8 3.1432 3.9176 0.1027 17 7 3.2726 3.9451 2.3183 18 6 3.7299 5.2669 2.3202 19 6 3.3998 6.1184 1.2731 20 6 3.8568 7.4209 1.2729 21 6 4.6448 7.8803 2.3186 22 8 5.0941 9.1635 2.3178 23 6 4.7159 9.9826 1.2096 24 6 4.9750 7.0309 3.3647 25 6 4.5191 5.7276 3.3664 26 6 4.8783 4.8049 4.5025 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5048 1.6654 -2.0136 33 1 1.8907 3.1529 -1.1152 34 1 3.3456 3.7254 -4.4492 35 1 3.1916 3.4586 3.1535 36 1 2.7865 5.7609 0.4592 37 1 3.6006 8.0826 0.4588 38 1 5.0907 9.5405 0.2865 39 1 3.6290 10.0526 1.1638 40 1 5.1390 10.9794 1.3335 41 1 5.5887 7.3892 4.1779 42 1 5.8088 4.2871 4.2697 43 1 5.0046 5.3857 5.4162 44 1 4.0815 4.0747 4.6433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124050708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:20 Heat of formation + Delta-G solvation = -81.695870 kcal Electronic energy + Delta-G solvation = -27516.042398 eV Core-core repulsion = 23627.009595 eV Total energy + Delta-G solvation = -3889.032803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17556 -41.03846 -39.83216 -38.47886 -37.27983 -35.31566 -34.68282 -33.51711 -32.04334 -30.74409 -29.07067 -28.37206 -27.48348 -26.19566 -25.01574 -24.22427 -22.83306 -21.90023 -20.72828 -19.12680 -18.72802 -18.51590 -18.35570 -17.46559 -17.18294 -16.80708 -16.60829 -16.50230 -15.99069 -15.53026 -15.21771 -15.12489 -14.91273 -14.51299 -14.45486 -14.29072 -14.14274 -13.88285 -13.57103 -13.33840 -13.18114 -13.14641 -12.86270 -12.74564 -12.71495 -12.70450 -12.43287 -12.29011 -12.07812 -11.82409 -11.78643 -11.67777 -11.00650 -10.58754 -10.14018 -9.79065 -9.64589 -8.65366 -8.14988 -6.22342 0.06963 0.30619 0.72733 1.35736 1.37942 1.41992 1.47371 2.21377 2.36490 2.39545 2.62716 2.77136 3.19165 3.38953 3.81069 3.85206 4.09213 4.14963 4.27746 4.34415 4.36207 4.38414 4.45144 4.51315 4.54950 4.72166 4.75549 4.80133 4.89566 4.94669 4.99016 5.01346 5.21590 5.23204 5.32208 5.34173 5.37684 5.43576 5.56916 5.75694 5.79022 6.09471 6.16766 6.31955 6.41613 6.77879 6.83282 7.09467 7.43152 8.93283 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004667 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.622856 B = 5998.285624 C = 7694.558014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.565 5.565 4 C 0.249 3.751 5 C -0.514 4.514 6 H 0.043 0.957 7 C 0.024 3.976 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.280 1.280 13 C 0.505 3.495 14 O -0.559 6.559 15 C 0.483 3.517 16 O -0.468 6.468 17 N -0.637 5.637 18 C 0.098 3.902 19 C -0.109 4.109 20 C -0.197 4.197 21 C 0.106 3.894 22 O -0.327 6.327 23 C 0.019 3.981 24 C -0.133 4.133 25 C -0.072 4.072 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.424 0.576 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.125 0.875 41 H 0.160 0.840 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 6.392 13.676 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.295 5.295 4 C 0.129 3.871 5 C -0.553 4.553 6 H 0.061 0.939 7 C -0.176 4.176 8 N -0.561 5.561 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.288 3.712 14 O -0.441 6.441 15 C 0.265 3.735 16 O -0.339 6.339 17 N -0.287 5.287 18 C 0.003 3.997 19 C -0.129 4.129 20 C -0.216 4.216 21 C 0.060 3.940 22 O -0.241 6.241 23 C -0.076 4.076 24 C -0.152 4.152 25 C -0.075 4.075 26 C -0.168 4.168 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.177 0.823 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.817 6.621 13.351 14.925 hybrid contribution 0.560 -0.117 -0.936 1.097 sum 1.377 6.504 12.415 14.083 Atomic orbital electron populations 1.22031 0.94090 1.03571 1.01502 1.21703 0.95760 0.80889 1.03493 1.48293 1.59299 1.14691 1.07248 1.19430 0.96223 0.92419 0.79029 1.21337 0.95070 1.32622 1.06276 0.93899 1.25467 1.00613 0.94702 0.96777 1.70001 1.35282 1.35302 1.15478 0.85723 0.80982 0.77814 0.78094 1.19282 1.20972 1.20496 1.19870 0.80137 0.86749 0.84494 1.90629 1.56283 1.66502 1.30645 1.20461 0.80869 0.87870 0.84347 1.90944 1.48193 1.64414 1.30373 1.43059 1.63906 1.11904 1.09797 1.17719 1.00251 0.83715 0.97975 1.21207 1.00123 0.92992 0.98566 1.21227 1.03360 0.96638 1.00354 1.19116 0.95148 0.84921 0.94842 1.86022 1.71554 1.19699 1.46805 1.23307 1.01435 0.95076 0.87766 1.20326 1.04042 0.91550 0.99306 1.19694 0.95792 0.95338 0.96664 1.20823 1.02340 0.98160 0.95474 0.93119 0.88654 0.93268 0.89741 0.89720 0.95922 0.94069 0.92825 0.73587 0.85862 0.84306 0.92819 0.92001 0.85656 0.82288 0.90143 0.88227 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 10.24 71.98 0.74 -3.70 16 2 C 0.10 3.56 6.11 86.38 0.53 4.09 16 3 N -0.57 -24.22 2.48 -827.87 -2.05 -26.27 16 4 C 0.25 12.64 4.79 85.63 0.41 13.05 16 5 C -0.51 -28.46 7.76 25.60 0.20 -28.26 16 6 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 7 C 0.02 1.34 5.46 84.65 0.46 1.80 16 8 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 9 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.51 21.22 7.67 87.23 0.67 21.89 16 14 O -0.56 -22.62 16.04 -3.29 -0.05 -22.67 16 15 C 0.48 20.32 7.53 87.23 0.66 20.98 16 16 O -0.47 -23.11 9.22 -3.37 -0.03 -23.14 16 17 N -0.64 -21.67 5.17 -304.74 -1.58 -23.25 16 18 C 0.10 3.23 6.43 38.19 0.25 3.47 16 19 C -0.11 -3.94 8.72 22.39 0.20 -3.74 16 20 C -0.20 -6.05 9.03 22.35 0.20 -5.85 16 21 C 0.11 2.90 6.69 22.51 0.15 3.05 16 22 O -0.33 -7.90 10.50 -93.08 -0.98 -8.88 16 23 C 0.02 0.32 9.81 113.37 1.11 1.44 16 24 C -0.13 -3.29 9.63 22.35 0.22 -3.08 16 25 C -0.07 -1.88 5.90 -19.74 -0.12 -2.00 16 26 C -0.11 -2.04 9.73 71.23 0.69 -1.35 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 31 H 0.08 2.78 7.36 -2.39 -0.02 2.76 16 32 H 0.02 1.19 8.02 -2.39 -0.02 1.17 16 33 H 0.04 2.31 5.85 -2.39 -0.01 2.29 16 34 H 0.26 14.67 8.31 -92.72 -0.77 13.90 16 35 H 0.42 12.17 6.37 -92.71 -0.59 11.58 16 36 H 0.12 5.23 5.72 -2.91 -0.02 5.22 16 37 H 0.14 3.81 6.29 -2.91 -0.02 3.79 16 38 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 39 H 0.06 0.99 7.66 -2.39 -0.02 0.98 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 44 H 0.07 1.22 6.40 -2.39 -0.02 1.21 16 Total: -1.00 -68.94 365.45 4.42 -64.51 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.44 Total: 24.56 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 6.36 Total: 21.78 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.34 Total: -103.28 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -1.06 Total: -54.69 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -68.94 4.42 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124050708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.184 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds