Wall clock time and date at job start Tue Mar 31 2020 12:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47100 * 2 1 4 4 C 1.46493 * 119.99967 * 269.99987 * 3 2 1 5 5 C 1.50699 * 109.47313 * 269.99749 * 4 3 2 6 6 H 1.07993 * 120.00204 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00150 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00401 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00029 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46902 * 90.00105 * 9 7 5 11 11 H 1.48498 * 109.47536 * 210.00067 * 9 7 5 12 12 H 1.48499 * 109.47297 * 330.00405 * 9 7 5 13 13 C 1.34772 * 119.99680 * 90.00000 * 3 2 1 14 14 O 1.21591 * 119.99737 * 179.97438 * 13 3 2 15 15 N 1.34772 * 120.00512 * 0.02562 * 13 3 2 16 16 C 1.39948 * 120.00349 * 184.59115 * 15 13 3 17 17 C 1.38866 * 120.06873 * 144.90614 * 16 15 13 18 18 C 1.38117 * 119.92815 * 180.27683 * 17 16 15 19 19 C 1.38282 * 120.07102 * 359.49241 * 18 17 16 20 20 C 1.50694 * 119.93355 * 180.25464 * 19 18 17 21 21 C 1.53000 * 109.47288 * 270.25440 * 20 19 18 22 22 C 1.50694 * 109.47288 * 179.97438 * 21 20 19 23 23 O 1.20830 * 119.99880 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00326 * 180.02562 * 22 21 20 25 25 C 1.38285 * 120.13683 * 0.50870 * 19 18 17 26 26 C 1.38115 * 120.06839 * 359.74621 * 25 19 18 27 27 H 1.08992 * 109.46971 * 59.99824 * 1 2 3 28 28 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46883 * 299.99984 * 1 2 3 30 30 H 1.09004 * 109.46883 * 240.00016 * 2 1 3 31 31 H 1.08998 * 109.47394 * 120.00307 * 2 1 3 32 32 H 1.09001 * 109.47585 * 30.00335 * 4 3 2 33 33 H 1.09007 * 109.47322 * 150.00079 * 4 3 2 34 34 H 0.96997 * 120.00611 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00078 * 4.58674 * 15 13 3 36 36 H 1.08005 * 120.03572 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.96448 * 179.74629 * 18 17 16 38 38 H 1.09000 * 109.47054 * 30.25394 * 20 19 18 39 39 H 1.08998 * 109.47163 * 150.25092 * 20 19 18 40 40 H 1.09000 * 109.47035 * 299.99966 * 21 20 19 41 41 H 1.09003 * 109.46872 * 59.99797 * 21 20 19 42 42 H 0.96698 * 117.00130 * 179.97438 * 24 22 21 43 43 H 1.07995 * 119.96522 * 179.76885 * 25 19 18 44 44 H 1.08001 * 120.03008 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2304 -1.0962 7 6 4.1494 2.3906 -2.8774 8 7 5.3913 2.1836 -3.2573 9 14 3.0135 3.4372 -3.9280 10 1 3.1173 4.8571 -3.5057 11 1 3.4065 3.3151 -5.3548 12 1 1.6136 2.9715 -3.7585 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0189 1.3810 2.3344 16 6 2.1595 2.0699 3.5445 17 6 1.3182 1.7816 4.6110 18 6 1.4558 2.4672 5.8021 19 6 2.4369 3.4324 5.9366 20 6 2.5880 4.1745 7.2394 21 6 1.7097 5.4270 7.2178 22 6 1.8603 6.1688 8.5209 23 8 2.5945 5.7394 9.3791 24 8 1.1781 7.3060 8.7286 25 6 3.2762 3.7217 4.8764 26 6 3.1403 3.0433 3.6810 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 5.7174 2.5741 -4.0832 35 1 1.7600 0.4462 2.3358 36 1 0.5538 1.0256 4.5076 37 1 0.7991 2.2464 6.6306 38 1 2.2809 3.5295 8.0627 39 1 3.6302 4.4638 7.3740 40 1 2.0168 6.0720 6.3945 41 1 0.6674 5.1376 7.0833 42 1 1.3070 7.7460 9.5800 43 1 4.0391 4.4786 4.9833 44 1 3.7959 3.2701 2.8533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158061756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:54 Heat of formation + Delta-G solvation = -118.796193 kcal Electronic energy + Delta-G solvation = -26103.311672 eV Core-core repulsion = 22212.670078 eV Total energy + Delta-G solvation = -3890.641594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74383 -41.21938 -39.90993 -37.30641 -37.07650 -36.28584 -34.87654 -33.97464 -31.90525 -31.76805 -30.45078 -29.10685 -26.11445 -24.54713 -24.28565 -23.79201 -22.54688 -21.46570 -20.74579 -19.34766 -19.10086 -19.06536 -18.26800 -17.60818 -17.16891 -16.82001 -16.64525 -16.15296 -16.03611 -15.42071 -15.32521 -14.79706 -14.69791 -14.55633 -14.47140 -14.38963 -14.13396 -13.82985 -13.66882 -13.44788 -13.18180 -12.97658 -12.62014 -12.52539 -12.48694 -12.42617 -12.26458 -12.05859 -11.96075 -11.82691 -11.73851 -11.61384 -11.22103 -10.88166 -10.81883 -9.79683 -9.54234 -8.86599 -8.33403 -6.38468 0.35261 0.53994 1.24713 1.32949 1.37802 1.45694 1.71576 2.12814 2.24860 2.31468 2.91692 2.96890 3.02989 3.91472 3.93767 4.02557 4.03745 4.14548 4.21484 4.35082 4.46447 4.53516 4.56373 4.60056 4.66811 4.74438 4.78031 4.86543 4.96596 4.97612 4.99193 5.14560 5.18776 5.35750 5.39420 5.44244 5.46243 5.61688 5.65984 5.67655 5.75047 6.03037 6.17472 6.27559 6.62707 7.01298 7.03077 7.23298 7.60316 8.83676 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002539 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.533209 B =11024.991617 C =11869.568490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.243 3.757 5 C -0.535 4.535 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.695 3.305 14 O -0.619 6.619 15 N -0.677 5.677 16 C 0.149 3.851 17 C -0.140 4.140 18 C -0.087 4.087 19 C -0.103 4.103 20 C -0.057 4.057 21 C -0.109 4.109 22 C 0.486 3.514 23 O -0.553 6.553 24 O -0.517 6.517 25 C -0.102 4.102 26 C -0.149 4.149 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.418 0.582 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.426 0.574 43 H 0.127 0.873 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 -0.140 21.949 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.345 5.345 4 C 0.120 3.880 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.397 3.603 14 O -0.499 6.499 15 N -0.327 5.327 16 C 0.054 3.946 17 C -0.160 4.160 18 C -0.106 4.106 19 C -0.104 4.104 20 C -0.094 4.094 21 C -0.146 4.146 22 C 0.330 3.670 23 O -0.444 6.444 24 O -0.330 6.330 25 C -0.120 4.120 26 C -0.170 4.170 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.146 0.854 42 H 0.288 0.712 43 H 0.145 0.855 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.152 0.355 21.550 26.346 hybrid contribution 0.724 0.454 -0.556 1.019 sum -14.428 0.808 20.994 25.487 Atomic orbital electron populations 1.22162 0.93670 1.03780 1.02175 1.21743 0.95819 0.81103 1.03753 1.47238 1.67591 1.15252 1.04373 1.19227 0.94744 0.92818 0.81230 1.21572 0.97142 1.32013 1.06633 0.95575 1.25855 0.96736 0.97209 0.98974 1.70051 1.17487 1.46618 1.24490 0.85708 0.80537 0.78938 0.77703 1.20317 1.20034 1.15862 1.16117 0.78616 0.84372 0.81243 1.90852 1.53202 1.19342 1.86473 1.42606 1.72846 1.14716 1.02567 1.17881 0.95527 0.95649 0.85564 1.21128 0.98940 1.03329 0.92610 1.21164 0.97492 0.94542 0.97363 1.19806 0.97018 0.98516 0.95085 1.20264 1.00470 0.94667 0.94030 1.21441 1.04858 0.96271 0.92046 1.23778 0.75136 0.78487 0.89564 1.90728 1.38465 1.67939 1.47314 1.84524 1.65525 1.37565 1.45426 1.21032 0.99852 0.99306 0.91839 1.21272 0.98506 0.99010 0.98210 0.93221 0.88432 0.92323 0.90298 0.89491 0.92835 0.96318 0.92298 0.74198 0.82820 0.82118 0.89171 0.90937 0.86934 0.85400 0.71200 0.85472 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 10.24 71.98 0.74 -2.61 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.61 -24.78 2.46 -844.20 -2.07 -26.85 16 4 C 0.24 11.81 4.23 85.63 0.36 12.17 16 5 C -0.53 -31.65 9.94 25.60 0.25 -31.39 16 6 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 7 C 0.01 0.60 5.47 84.65 0.46 1.06 16 8 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 9 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 13 C 0.69 29.17 8.12 179.06 1.45 30.63 16 14 O -0.62 -31.99 13.35 -4.00 -0.05 -32.05 16 15 N -0.68 -20.88 5.22 -317.19 -1.65 -22.54 16 16 C 0.15 4.37 6.30 38.14 0.24 4.61 16 17 C -0.14 -2.79 9.97 22.39 0.22 -2.57 16 18 C -0.09 -1.45 9.69 22.25 0.22 -1.24 16 19 C -0.10 -2.00 5.14 -19.84 -0.10 -2.10 16 20 C -0.06 -0.86 4.63 29.85 0.14 -0.73 16 21 C -0.11 -1.37 5.79 29.85 0.17 -1.19 16 22 C 0.49 7.36 8.33 71.23 0.59 7.95 16 23 O -0.55 -12.07 16.74 21.95 0.37 -11.71 16 24 O -0.52 -5.70 13.42 -51.42 -0.69 -6.39 16 25 C -0.10 -2.65 9.69 22.25 0.22 -2.43 16 26 C -0.15 -5.05 8.70 22.39 0.19 -4.86 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 2.40 8.07 -2.38 -0.02 2.38 16 31 H 0.09 1.96 6.30 -2.39 -0.02 1.95 16 32 H 0.05 2.37 7.13 -2.39 -0.02 2.35 16 33 H 0.02 0.98 6.85 -2.38 -0.02 0.97 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 35 H 0.42 9.60 6.52 -92.71 -0.60 8.99 16 36 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 39 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 40 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.43 1.30 9.10 -74.06 -0.67 0.63 16 43 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.10 4.26 6.22 -2.91 -0.02 4.24 16 Total: -1.00 -85.79 373.06 3.46 -82.34 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.30 Total: 20.17 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.68 Total: 10.61 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.43 Total: -109.37 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.38 Total: -50.15 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -85.79 3.46 -82.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158061756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.458 kcal (2) G-P(sol) polarization free energy of solvation -85.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds