Wall clock time and date at job start Tue Mar 31 2020 12:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47525 * 2 1 4 4 C 1.34694 * 117.00468 * 179.97438 * 3 2 1 5 5 O 1.21444 * 119.99992 * 0.02562 * 4 3 2 6 6 C 1.47888 * 120.00025 * 179.97438 * 4 3 2 7 7 C 1.39916 * 120.47192 * 354.47648 * 6 4 3 8 8 C 1.38448 * 118.35747 * 180.22764 * 7 6 4 9 9 C 1.39309 * 119.19188 * 359.50439 * 8 7 6 10 10 C 1.48344 * 119.56515 * 180.25063 * 9 8 7 11 11 O 1.21488 * 119.99799 * 354.06378 * 10 9 8 12 12 N 1.34778 * 119.99588 * 174.06422 * 10 9 8 13 13 C 1.46498 * 120.00360 * 354.85779 * 12 10 9 14 14 C 1.52991 * 109.46877 * 84.63095 * 13 12 10 15 15 C 1.46499 * 119.99515 * 174.86023 * 12 10 9 16 16 C 1.50698 * 109.47488 * 89.99820 * 15 12 10 17 17 H 1.08008 * 119.99841 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00497 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47286 * 89.99968 * 20 18 16 22 22 H 1.48497 * 109.47211 * 210.00049 * 20 18 16 23 23 H 1.48501 * 109.46992 * 329.99798 * 20 18 16 24 24 N 1.32716 * 120.86494 * 0.50877 * 9 8 7 25 25 C 1.31414 * 121.80944 * 359.74044 * 24 9 8 26 26 C 1.50700 * 119.64001 * 180.02562 * 25 24 9 27 27 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47363 * 300.00197 * 1 2 3 29 29 H 1.09009 * 109.47231 * 60.00176 * 1 2 3 30 30 H 1.09002 * 109.47363 * 239.99803 * 2 1 3 31 31 H 1.09003 * 109.47310 * 120.00266 * 2 1 3 32 32 H 1.08005 * 120.82170 * 359.95067 * 7 6 4 33 33 H 1.07999 * 120.40433 * 179.74307 * 8 7 6 34 34 H 1.08997 * 109.46697 * 204.63337 * 13 12 10 35 35 H 1.09003 * 109.47084 * 324.63278 * 13 12 10 36 36 H 1.08997 * 109.47654 * 299.99655 * 14 13 12 37 37 H 1.09006 * 109.47587 * 60.00002 * 14 13 12 38 38 H 1.09003 * 109.47029 * 179.97438 * 14 13 12 39 39 H 1.08995 * 109.47338 * 209.99746 * 15 12 10 40 40 H 1.09004 * 109.47314 * 329.99755 * 15 12 10 41 41 H 0.97000 * 119.99905 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47217 * 263.21952 * 26 25 24 43 43 H 1.08994 * 109.47558 * 23.22781 * 26 25 24 44 44 H 1.09006 * 109.46926 * 143.22719 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0891 0.5823 0.0005 6 6 3.9146 2.9120 0.0000 7 6 3.0767 4.0263 -0.1171 8 6 3.6529 5.2852 -0.1175 9 6 5.0355 5.3996 0.0083 10 6 5.6611 6.7447 0.0145 11 8 4.9837 7.7306 -0.1974 12 7 6.9811 6.8728 0.2552 13 6 7.7763 5.6982 0.6215 14 6 8.2196 4.9668 -0.6470 15 6 7.6205 8.1867 0.1506 16 6 7.5658 8.8800 1.4875 17 1 7.1008 8.3909 2.3308 18 6 8.1093 10.1385 1.6343 19 7 8.6750 10.7343 0.6073 20 14 8.0421 10.9975 3.2917 21 1 9.2546 10.6535 4.0771 22 1 7.9863 12.4670 3.0858 23 1 6.8321 10.5548 4.0300 24 7 5.8009 4.3209 0.1176 25 6 5.2934 3.1087 0.1171 26 6 6.2081 1.9178 0.2445 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0072 3.9073 -0.2096 33 1 3.0376 6.1679 -0.2103 34 1 8.6545 6.0152 1.1840 35 1 7.1738 5.0286 1.2353 36 1 7.3415 4.6499 -1.2095 37 1 8.8221 5.6365 -1.2609 38 1 8.8117 4.0931 -0.3745 39 1 8.6602 8.0618 -0.1516 40 1 7.0960 8.7880 -0.5921 41 1 9.0578 11.6196 0.7107 42 1 6.4248 1.5183 -0.7462 43 1 7.1378 2.2233 0.7245 44 1 5.7231 1.1501 0.8476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264005212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:26 Heat of formation + Delta-G solvation = -65.400703 kcal Electronic energy + Delta-G solvation = -27014.604438 eV Core-core repulsion = 23126.278246 eV Total energy + Delta-G solvation = -3888.326191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27005 -40.19009 -38.45842 -36.95129 -35.48271 -33.35480 -32.95344 -32.50440 -31.82495 -29.94168 -28.05847 -27.50315 -25.56581 -23.72687 -23.01473 -22.76998 -22.18823 -21.40357 -19.20676 -18.28753 -17.28270 -16.97581 -16.77561 -16.38589 -16.35518 -15.26900 -15.12497 -14.57891 -14.52424 -14.34731 -14.08086 -13.80679 -13.57332 -13.37407 -13.24370 -12.89860 -12.73110 -12.51394 -12.34583 -12.19916 -12.12159 -11.96910 -11.81177 -11.49042 -11.18612 -10.90765 -10.87946 -10.73958 -10.56151 -10.48990 -10.14099 -9.81712 -9.74141 -9.57578 -9.16871 -8.96045 -8.42829 -7.66570 -6.03706 -4.08325 0.11884 1.04809 2.13440 2.24641 3.14239 3.31576 3.37866 3.42405 3.64275 3.95370 4.10855 4.27503 4.45173 4.47487 4.52409 4.56487 4.72935 4.83391 4.86240 5.05544 5.28959 5.31525 5.35887 5.46016 5.52617 5.54440 5.61025 5.72079 5.77163 5.88338 5.94515 5.98570 6.07702 6.14300 6.33863 6.44446 6.54070 6.85131 7.05748 7.40341 7.41692 7.49660 7.65375 7.92335 8.22120 8.35533 8.82769 9.00022 9.56347 11.04394 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023459 B = 0.002858 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.261035 B = 9793.259236 C =10337.498101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.517 3.483 5 O -0.497 6.497 6 C -0.179 4.179 7 C -0.021 4.021 8 C -0.139 4.139 9 C 0.135 3.865 10 C 0.547 3.453 11 O -0.528 6.528 12 N -0.569 5.569 13 C 0.113 3.887 14 C -0.151 4.151 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 N -0.448 5.448 25 C 0.185 3.815 26 C -0.111 4.111 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.000 -22.540 -2.030 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.362 3.638 5 O -0.387 6.387 6 C -0.182 4.182 7 C -0.047 4.047 8 C -0.160 4.160 9 C -0.004 4.004 10 C 0.331 3.669 11 O -0.405 6.405 12 N -0.298 5.298 13 C -0.010 4.010 14 C -0.209 4.209 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 N -0.161 5.161 25 C 0.045 3.955 26 C -0.167 4.167 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.131 -21.987 -2.119 24.735 hybrid contribution -0.879 0.302 0.787 1.218 sum -12.010 -21.685 -1.332 24.824 Atomic orbital electron populations 1.21822 0.92458 1.03090 1.03704 1.23061 0.95426 0.79734 1.02790 1.86539 1.23711 1.32705 1.84202 1.20927 0.80599 0.89422 0.72857 1.90791 1.59711 1.42497 1.45664 1.20047 0.95072 0.91059 1.12063 1.21878 1.00805 0.90831 0.91180 1.22147 0.95238 0.98802 0.99788 1.22090 0.91430 0.93855 0.92995 1.17807 0.83185 0.85984 0.79905 1.90773 1.61762 1.37480 1.50481 1.48241 1.06784 1.11274 1.63503 1.21668 0.95737 0.86629 0.96979 1.22101 1.00693 0.99422 0.98703 1.19399 0.92880 0.77153 0.98033 1.21399 1.37630 1.01465 0.95830 0.92385 1.24931 0.95157 0.96977 0.97040 1.69934 1.38383 1.15125 1.29936 0.86480 0.78368 0.78707 0.83772 1.20632 1.21091 1.19884 1.68507 1.37407 0.97523 1.12619 1.21696 0.90135 0.93870 0.89785 1.21082 0.98312 0.93330 1.04014 0.90113 0.91343 0.91363 0.91031 0.91021 0.82958 0.82534 0.91011 0.89579 0.92195 0.93592 0.92694 0.94504 0.93838 0.92700 0.89719 0.90384 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.15 0.38 -0.35 16 2 C 0.06 0.45 6.19 37.15 0.23 0.68 16 3 O -0.35 -3.40 9.56 -40.48 -0.39 -3.79 16 4 C 0.52 5.82 7.84 34.68 0.27 6.09 16 5 O -0.50 -6.14 13.14 -19.22 -0.25 -6.39 16 6 C -0.18 -2.14 5.89 -104.75 -0.62 -2.76 16 7 C -0.02 -0.24 9.73 -38.88 -0.38 -0.62 16 8 C -0.14 -1.94 9.62 -39.11 -0.38 -2.32 16 9 C 0.13 2.27 6.50 -82.93 -0.54 1.73 16 10 C 0.55 11.81 7.61 -12.10 -0.09 11.72 16 11 O -0.53 -13.16 15.96 5.38 0.09 -13.07 16 12 N -0.57 -12.55 2.47 -176.00 -0.43 -12.98 16 13 C 0.11 2.02 5.69 -4.05 -0.02 2.00 16 14 C -0.15 -2.31 9.48 37.15 0.35 -1.96 16 15 C 0.24 6.44 5.10 -5.19 -0.03 6.41 16 16 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 17 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 20 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 N -0.45 -6.73 3.76 -5.74 -0.02 -6.75 16 25 C 0.18 2.39 6.82 -82.20 -0.56 1.83 16 26 C -0.11 -1.19 8.87 36.01 0.32 -0.88 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.27 7.71 -52.48 -0.40 0.87 16 33 H 0.16 2.12 7.64 -52.49 -0.40 1.72 16 34 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 35 H 0.09 1.45 5.74 -51.93 -0.30 1.15 16 36 H 0.06 0.94 6.12 -51.93 -0.32 0.62 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 40 H 0.04 1.27 7.50 -51.93 -0.39 0.89 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.06 5.84 -51.93 -0.30 0.76 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -33.00 369.54 -7.50 -40.50 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.30 Total: -2.12 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.48 Total: 7.95 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.28 Total: -45.59 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.55 Total: -23.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.00 -7.50 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264005212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.902 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds