Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47525 * 2 1 4 4 C 1.34694 * 117.00468 * 179.97438 * 3 2 1 5 5 O 1.21444 * 119.99992 * 0.02562 * 4 3 2 6 6 C 1.47888 * 120.00025 * 179.97438 * 4 3 2 7 7 C 1.39916 * 120.47192 * 354.47648 * 6 4 3 8 8 C 1.38448 * 118.35747 * 180.22764 * 7 6 4 9 9 C 1.39309 * 119.19188 * 359.50439 * 8 7 6 10 10 C 1.48344 * 119.56515 * 180.25063 * 9 8 7 11 11 O 1.21488 * 119.99799 * 354.06378 * 10 9 8 12 12 N 1.34778 * 119.99588 * 174.06422 * 10 9 8 13 13 C 1.46498 * 120.00360 * 354.85779 * 12 10 9 14 14 C 1.52991 * 109.46877 * 84.63095 * 13 12 10 15 15 C 1.46499 * 119.99515 * 174.86023 * 12 10 9 16 16 C 1.50698 * 109.47488 * 89.99820 * 15 12 10 17 17 H 1.08008 * 119.99841 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00497 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99944 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47286 * 89.99968 * 20 18 16 22 22 H 1.48497 * 109.47211 * 210.00049 * 20 18 16 23 23 H 1.48501 * 109.46992 * 329.99798 * 20 18 16 24 24 N 1.32716 * 120.86494 * 0.50877 * 9 8 7 25 25 C 1.31414 * 121.80944 * 359.74044 * 24 9 8 26 26 C 1.50700 * 119.64001 * 180.02562 * 25 24 9 27 27 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47363 * 300.00197 * 1 2 3 29 29 H 1.09009 * 109.47231 * 60.00176 * 1 2 3 30 30 H 1.09002 * 109.47363 * 239.99803 * 2 1 3 31 31 H 1.09003 * 109.47310 * 120.00266 * 2 1 3 32 32 H 1.08005 * 120.82170 * 359.95067 * 7 6 4 33 33 H 1.07999 * 120.40433 * 179.74307 * 8 7 6 34 34 H 1.08997 * 109.46697 * 204.63337 * 13 12 10 35 35 H 1.09003 * 109.47084 * 324.63278 * 13 12 10 36 36 H 1.08997 * 109.47654 * 299.99655 * 14 13 12 37 37 H 1.09006 * 109.47587 * 60.00002 * 14 13 12 38 38 H 1.09003 * 109.47029 * 179.97438 * 14 13 12 39 39 H 1.08995 * 109.47338 * 209.99746 * 15 12 10 40 40 H 1.09004 * 109.47314 * 329.99755 * 15 12 10 41 41 H 0.97000 * 119.99905 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47217 * 263.21952 * 26 25 24 43 43 H 1.08994 * 109.47558 * 23.22781 * 26 25 24 44 44 H 1.09006 * 109.46926 * 143.22719 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5454 0.0005 5 8 4.0891 0.5823 0.0005 6 6 3.9146 2.9120 0.0000 7 6 3.0767 4.0263 -0.1171 8 6 3.6529 5.2852 -0.1175 9 6 5.0355 5.3996 0.0083 10 6 5.6611 6.7447 0.0145 11 8 4.9837 7.7306 -0.1974 12 7 6.9811 6.8728 0.2552 13 6 7.7763 5.6982 0.6215 14 6 8.2196 4.9668 -0.6470 15 6 7.6205 8.1867 0.1506 16 6 7.5658 8.8800 1.4875 17 1 7.1008 8.3909 2.3308 18 6 8.1093 10.1385 1.6343 19 7 8.6750 10.7343 0.6073 20 14 8.0421 10.9975 3.2917 21 1 9.2546 10.6535 4.0771 22 1 7.9863 12.4670 3.0858 23 1 6.8321 10.5548 4.0300 24 7 5.8009 4.3209 0.1176 25 6 5.2934 3.1087 0.1171 26 6 6.2081 1.9178 0.2445 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0072 3.9073 -0.2096 33 1 3.0376 6.1679 -0.2103 34 1 8.6545 6.0152 1.1840 35 1 7.1738 5.0286 1.2353 36 1 7.3415 4.6499 -1.2095 37 1 8.8221 5.6365 -1.2609 38 1 8.8117 4.0931 -0.3745 39 1 8.6602 8.0618 -0.1516 40 1 7.0960 8.7880 -0.5921 41 1 9.0578 11.6196 0.7107 42 1 6.4248 1.5183 -0.7462 43 1 7.1378 2.2233 0.7245 44 1 5.7231 1.1501 0.8476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264005212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -84.007415 kcal Electronic energy + Delta-G solvation = -27015.411285 eV Core-core repulsion = 23126.278246 eV Total energy + Delta-G solvation = -3889.133039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31708 -41.27838 -39.92742 -37.77627 -37.18296 -35.03717 -34.20339 -33.79945 -32.44197 -31.53580 -29.38140 -28.98360 -26.95713 -24.92895 -24.38833 -24.11255 -23.13941 -22.39350 -20.72618 -19.20677 -18.73086 -18.36184 -17.95804 -17.68978 -17.61132 -16.86383 -16.38607 -16.29954 -15.59354 -15.53908 -15.29601 -14.89441 -14.79327 -14.57119 -14.30177 -14.09436 -13.85249 -13.57679 -13.50141 -13.35839 -13.22419 -13.11569 -13.03869 -12.85500 -12.66162 -12.51529 -12.46858 -12.17422 -11.93155 -11.74301 -11.52585 -11.40370 -11.23339 -10.92210 -10.64643 -10.33713 -10.27655 -9.48914 -8.23240 -6.38068 -0.98529 0.03459 1.10447 1.36905 1.39628 1.46336 1.50287 1.84104 2.09891 2.39343 2.65182 2.88041 3.06405 3.39456 3.49380 3.57361 3.79630 3.97874 4.06365 4.10215 4.30195 4.39603 4.46837 4.59064 4.64060 4.66044 4.75718 4.79134 4.83793 4.93055 4.96936 5.01001 5.05491 5.07993 5.12057 5.18164 5.21243 5.34060 5.49633 5.57009 5.57650 5.81160 6.02919 6.46190 6.58205 6.66062 6.70438 7.16851 7.34864 8.84129 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023459 B = 0.002858 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.261035 B = 9793.259236 C =10337.498101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.522 3.478 5 O -0.507 6.507 6 C -0.171 4.171 7 C 0.000 4.000 8 C -0.136 4.136 9 C 0.111 3.889 10 C 0.541 3.459 11 O -0.576 6.576 12 N -0.579 5.579 13 C 0.113 3.887 14 C -0.139 4.139 15 C 0.260 3.740 16 C -0.542 4.542 17 H 0.051 0.949 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.273 1.273 24 N -0.454 5.454 25 C 0.179 3.821 26 C -0.105 4.105 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.188 0.812 33 H 0.156 0.844 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -25.157 -1.018 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.270 6.270 4 C 0.367 3.633 5 O -0.398 6.398 6 C -0.175 4.175 7 C -0.025 4.025 8 C -0.157 4.157 9 C -0.026 4.026 10 C 0.328 3.672 11 O -0.456 6.456 12 N -0.307 5.307 13 C -0.009 4.009 14 C -0.197 4.197 15 C 0.140 3.860 16 C -0.581 4.581 17 H 0.069 0.931 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.198 1.198 24 N -0.167 5.167 25 C 0.039 3.961 26 C -0.162 4.162 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.205 0.795 33 H 0.174 0.826 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.021 0.979 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.394 -24.650 -1.106 27.612 hybrid contribution -0.580 0.949 0.425 1.191 sum -12.974 -23.701 -0.681 27.028 Atomic orbital electron populations 1.21847 0.90614 1.04415 1.03729 1.23365 0.96838 0.78403 1.03115 1.86531 1.22440 1.34430 1.83647 1.20686 0.81210 0.88708 0.72701 1.90794 1.60186 1.42671 1.46122 1.20231 0.94913 0.91964 1.10351 1.22160 1.02322 0.89119 0.88941 1.22180 0.93944 1.00151 0.99468 1.21363 0.92369 0.91961 0.96929 1.18485 0.82621 0.87712 0.78386 1.90720 1.62728 1.39768 1.52404 1.48260 1.07675 1.10840 1.63954 1.21890 0.95137 0.85432 0.98455 1.21998 1.00756 0.99887 0.97051 1.18863 0.91906 0.79064 0.96208 1.21625 1.37916 1.02262 0.96292 0.93094 1.25853 0.94483 0.97600 1.01083 1.70049 1.38856 1.15610 1.32102 0.85388 0.78809 0.77511 0.78939 1.18867 1.20367 1.19820 1.68304 1.37606 0.97776 1.13057 1.22033 0.91195 0.93441 0.89419 1.21109 0.98202 0.92283 1.04589 0.88156 0.91350 0.91273 0.90724 0.90750 0.79462 0.82585 0.91858 0.88077 0.92304 0.95077 0.89345 0.95513 0.97941 0.92288 0.88886 0.89613 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 71.98 0.74 -0.23 16 2 C 0.06 0.63 6.19 71.98 0.45 1.07 16 3 O -0.35 -5.67 9.56 -56.03 -0.54 -6.21 16 4 C 0.52 10.20 7.84 70.38 0.55 10.76 16 5 O -0.51 -11.12 13.14 20.02 0.26 -10.86 16 6 C -0.17 -3.64 5.89 -19.94 -0.12 -3.76 16 7 C 0.00 0.00 9.73 22.73 0.22 0.22 16 8 C -0.14 -3.70 9.62 22.58 0.22 -3.48 16 9 C 0.11 3.75 6.50 41.96 0.27 4.02 16 10 C 0.54 24.44 7.61 86.93 0.66 25.10 16 11 O -0.58 -30.43 15.96 -3.68 -0.06 -30.49 16 12 N -0.58 -26.73 2.47 -829.03 -2.05 -28.77 16 13 C 0.11 4.08 5.69 86.38 0.49 4.57 16 14 C -0.14 -4.19 9.48 71.98 0.68 -3.51 16 15 C 0.26 14.57 5.10 85.63 0.44 15.01 16 16 C -0.54 -32.13 9.39 25.60 0.24 -31.89 16 17 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.52 5.46 84.65 0.46 0.99 16 19 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 20 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 N -0.45 -13.21 3.76 -172.08 -0.65 -13.86 16 25 C 0.18 4.26 6.82 42.99 0.29 4.56 16 26 C -0.11 -2.00 8.87 71.24 0.63 -1.37 16 27 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.19 2.39 7.71 -2.91 -0.02 2.37 16 33 H 0.16 4.22 7.64 -2.91 -0.02 4.20 16 34 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 35 H 0.10 3.36 5.74 -2.39 -0.01 3.35 16 36 H 0.06 1.80 6.12 -2.39 -0.01 1.79 16 37 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 40 H 0.00 0.16 7.50 -2.38 -0.02 0.14 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.90 5.84 -2.38 -0.01 1.89 16 Total: -1.00 -74.38 369.54 6.53 -67.85 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.01 Total: 8.98 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 6.23 Total: 22.06 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -2.41 Total: -98.93 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.33 Total: -47.56 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.38 6.53 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264005212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.158 kcal (2) G-P(sol) polarization free energy of solvation -74.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds