Wall clock time and date at job start Tue Mar 31 2020 12:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47151 * 2 1 4 4 C 1.37697 * 127.18649 * 268.99967 * 3 2 1 5 5 C 1.47186 * 126.50382 * 359.97065 * 4 3 2 6 6 C 1.35078 * 125.28699 * 165.00415 * 5 4 3 7 7 C 1.37862 * 114.66476 * 179.97438 * 6 5 4 8 8 C 1.33666 * 115.09396 * 359.97438 * 7 6 5 9 9 C 1.50697 * 125.10143 * 179.97438 * 8 7 6 10 10 S 1.75853 * 109.79233 * 359.75634 * 8 7 6 11 11 N 1.31484 * 106.99306 * 179.83933 * 4 3 2 12 12 N 1.28504 * 109.92707 * 0.43373 * 11 4 3 13 13 C 1.31286 * 110.15917 * 359.72382 * 12 11 4 14 14 N 1.38497 * 126.35126 * 180.02562 * 13 12 11 15 15 C 1.46897 * 111.00319 * 307.21124 * 14 13 12 16 16 C 1.46902 * 111.00446 * 71.17100 * 14 13 12 17 17 H 1.09000 * 109.47338 * 54.99444 * 16 14 13 18 18 C 1.53001 * 109.46658 * 294.99638 * 16 14 13 19 19 C 1.50696 * 109.47393 * 175.00030 * 16 14 13 20 20 H 1.08006 * 120.00073 * 5.60375 * 19 16 14 21 21 C 1.37883 * 120.00224 * 185.61362 * 19 16 14 22 22 N 1.31510 * 119.99624 * 9.80443 * 21 19 16 23 23 Si 1.86800 * 120.00074 * 189.80989 * 21 19 16 24 24 H 1.48500 * 109.47020 * 94.99110 * 23 21 19 25 25 H 1.48496 * 109.47028 * 214.98879 * 23 21 19 26 26 H 1.48503 * 109.47038 * 334.98746 * 23 21 19 27 27 H 1.09004 * 109.47327 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47531 * 300.00041 * 1 2 3 29 29 H 1.09005 * 109.47297 * 60.00455 * 1 2 3 30 30 H 1.09000 * 109.47846 * 239.99520 * 2 1 3 31 31 H 1.09006 * 109.46869 * 119.99862 * 2 1 3 32 32 H 1.08005 * 122.66673 * 359.97438 * 6 5 4 33 33 H 1.08004 * 122.45558 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47162 * 90.00073 * 9 8 7 35 35 H 1.09008 * 109.46924 * 209.99861 * 9 8 7 36 36 H 1.08997 * 109.47576 * 330.00202 * 9 8 7 37 37 H 1.09003 * 109.47138 * 62.27553 * 15 14 13 38 38 H 1.08997 * 109.47302 * 182.28202 * 15 14 13 39 39 H 1.09000 * 109.47030 * 302.27893 * 15 14 13 40 40 H 1.09000 * 109.47226 * 62.75693 * 18 16 14 41 41 H 1.08996 * 109.47126 * 182.75987 * 18 16 14 42 42 H 1.09005 * 109.47132 * 302.75777 * 18 16 14 43 43 H 0.96998 * 119.99750 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3138 2.1595 -1.0968 5 6 2.1998 1.7613 -2.5092 6 6 2.2158 2.6073 -3.5621 7 6 2.0938 1.9971 -4.7923 8 6 1.9793 0.6659 -4.7560 9 6 1.8335 -0.2246 -5.9629 10 16 2.0305 0.1092 -3.0887 11 7 2.7143 3.3267 -0.6431 12 7 2.6978 3.3263 0.6418 13 6 2.2812 2.1641 1.0886 14 7 2.1349 1.7997 2.4167 15 6 3.3712 2.0482 3.1701 16 6 0.9955 2.4943 3.0309 17 1 0.0967 2.3085 2.4428 18 6 1.2765 3.9977 3.0715 19 6 0.7924 1.9832 4.4339 20 1 1.4975 1.2860 4.8620 21 6 -0.2936 2.4054 5.1710 22 7 -1.2518 3.0966 4.5933 23 14 -0.4039 1.9957 6.9902 24 1 0.1293 3.1302 7.7863 25 1 -1.8224 1.7561 7.3585 26 1 0.3936 0.7751 7.2719 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3161 3.6768 -3.4492 33 1 2.0910 2.5540 -5.7178 34 1 2.8206 -0.5289 -6.3113 35 1 1.2546 -1.1084 -5.6945 36 1 1.3201 0.3191 -6.7558 37 1 3.5960 3.1147 3.1579 38 1 3.2421 1.7158 4.2001 39 1 4.1930 1.4985 2.7113 40 1 1.3749 4.3767 2.0542 41 1 0.4531 4.5079 3.5712 42 1 2.2019 4.1797 3.6181 43 1 -2.0156 3.3939 5.1120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290961380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:26 Heat of formation + Delta-G solvation = 123.615707 kcal Electronic energy + Delta-G solvation = -25064.068202 eV Core-core repulsion = 21658.983999 eV Total energy + Delta-G solvation = -3405.084203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46397 -38.08612 -37.22882 -35.45664 -33.01588 -32.45804 -30.38005 -29.79766 -28.68624 -26.60861 -25.37521 -25.12857 -23.91643 -23.44435 -21.69332 -21.37100 -19.48344 -18.61408 -17.54939 -16.54969 -16.10957 -15.94509 -15.58542 -15.19403 -14.63260 -14.56133 -14.18311 -13.77309 -13.60296 -13.25280 -13.12430 -12.95810 -12.57460 -12.39018 -12.31896 -12.14912 -11.91721 -11.58515 -11.43125 -11.33579 -11.17375 -10.98136 -10.88697 -10.79487 -10.60522 -10.28443 -10.13855 -9.98479 -9.85142 -9.36464 -9.00333 -8.66749 -8.45684 -8.01299 -7.72262 -6.13911 -4.15624 0.50948 1.25569 1.71181 2.10302 2.51491 2.75178 3.25924 3.33378 3.34721 3.37575 4.29958 4.34944 4.58182 4.62626 4.70763 4.98404 5.07966 5.15294 5.20988 5.21839 5.30888 5.45388 5.61775 5.63936 5.67645 5.74507 5.82880 5.96472 6.10948 6.13892 6.28599 6.31413 6.34563 6.39551 6.54530 6.76563 6.89557 6.95816 7.04783 7.43329 7.51133 7.71999 7.85862 8.09130 8.40580 8.86820 9.10656 9.47704 10.95824 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.003344 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.648619 B = 8370.755840 C = 8760.205503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.467 5.467 4 C 0.216 3.784 5 C -0.105 4.105 6 C -0.091 4.091 7 C -0.136 4.136 8 C -0.184 4.184 9 C -0.081 4.081 10 S 0.123 5.877 11 N -0.265 5.265 12 N -0.311 5.311 13 C 0.391 3.609 14 N -0.469 5.469 15 C 0.044 3.956 16 C 0.224 3.776 17 H 0.044 0.956 18 C -0.167 4.167 19 C -0.510 4.510 20 H 0.067 0.933 21 C 0.066 3.934 22 N -0.887 5.887 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.273 1.273 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -8.447 -17.690 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.160 5.160 4 C -0.048 4.048 5 C -0.224 4.224 6 C -0.125 4.125 7 C -0.166 4.166 8 C -0.302 4.302 9 C -0.140 4.140 10 S 0.387 5.613 11 N -0.108 5.108 12 N -0.155 5.155 13 C 0.035 3.965 14 N -0.195 5.195 15 C -0.103 4.103 16 C 0.119 3.881 17 H 0.062 0.938 18 C -0.227 4.227 19 C -0.549 4.549 20 H 0.085 0.915 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.384 -8.900 -16.872 19.820 hybrid contribution -0.486 0.713 0.397 0.950 sum 4.898 -8.187 -16.474 19.037 Atomic orbital electron populations 1.22151 0.93207 1.03386 1.03910 1.21875 0.96552 0.78833 1.03768 1.46549 1.49882 1.13710 1.05878 1.21268 1.06774 0.90214 0.86572 1.21245 1.13245 0.96537 0.91390 1.20312 1.00570 1.01519 0.90061 1.19958 1.04668 0.93239 0.98738 1.24800 1.09052 0.98018 0.98333 1.20340 1.02599 0.97911 0.93150 1.84085 1.72780 1.05900 0.98566 1.74391 1.16961 1.15680 1.03818 1.74748 1.21484 1.17040 1.02261 1.22893 0.97862 0.86107 0.89591 1.59438 1.08049 1.58092 0.93968 1.22266 0.88605 1.00404 0.99061 1.19436 0.85222 0.88758 0.94641 0.93771 1.22381 1.00980 0.99863 0.99436 1.20977 1.09702 1.27322 0.96893 0.91508 1.24903 0.94967 0.95232 0.98624 1.69979 1.08877 1.37761 1.35807 0.86505 0.77279 0.78720 0.85069 1.20607 1.21292 1.19730 0.90305 0.90182 0.92349 0.90285 0.87306 0.83115 0.83859 0.90661 0.91270 0.90399 0.93766 0.89209 0.93700 0.94675 0.91225 0.94434 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.62 6.53 -4.05 -0.03 1.59 16 3 N -0.47 -8.45 2.84 -114.77 -0.33 -8.78 16 4 C 0.22 3.92 7.87 -153.76 -1.21 2.71 16 5 C -0.10 -1.52 6.37 -37.07 -0.24 -1.76 16 6 C -0.09 -1.17 10.08 -40.84 -0.41 -1.58 16 7 C -0.14 -1.38 10.03 -41.32 -0.41 -1.80 16 8 C -0.18 -1.77 6.51 -35.91 -0.23 -2.00 16 9 C -0.08 -0.51 10.37 36.00 0.37 -0.14 16 10 S 0.12 1.37 20.19 -107.50 -2.17 -0.80 16 11 N -0.27 -5.53 12.20 32.49 0.40 -5.13 16 12 N -0.31 -6.94 9.90 30.35 0.30 -6.63 16 13 C 0.39 8.23 6.20 -318.65 -1.97 6.25 16 14 N -0.47 -10.14 4.77 -176.03 -0.84 -10.98 16 15 C 0.04 0.86 8.71 60.06 0.52 1.39 16 16 C 0.22 5.57 2.18 -68.87 -0.15 5.42 16 17 H 0.04 1.24 8.05 -51.93 -0.42 0.82 16 18 C -0.17 -4.18 8.28 37.16 0.31 -3.87 16 19 C -0.51 -13.32 7.95 -34.44 -0.27 -13.59 16 20 H 0.07 1.70 6.56 -52.48 -0.34 1.36 16 21 C 0.07 1.75 5.18 -17.82 -0.09 1.66 16 22 N -0.89 -24.87 12.18 55.43 0.68 -24.20 16 23 Si 0.90 20.60 29.55 -169.99 -5.02 15.57 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.95 5.11 -44.56 -0.23 0.72 16 31 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.90 6.23 -51.93 -0.32 0.58 16 38 H 0.09 1.75 6.38 -51.93 -0.33 1.42 16 39 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 40 H 0.03 0.87 6.13 -51.93 -0.32 0.55 16 41 H 0.07 1.88 6.87 -51.93 -0.36 1.52 16 42 H 0.04 0.89 6.27 -51.93 -0.33 0.57 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -30.59 360.60 -11.00 -41.59 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.01 Total: 1.63 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.44 Total: -7.71 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.21 Total: -55.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.17 Total: -0.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.59 -11.00 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290961380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.202 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds