Wall clock time and date at job start Tue Mar 31 2020 12:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47565 * 2 1 4 4 C 1.35897 * 117.00174 * 180.02562 * 3 2 1 5 5 C 1.38602 * 120.01922 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.87433 * 180.02562 * 5 4 3 7 7 N 1.39721 * 120.04828 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99701 * 144.60023 * 7 6 5 9 9 O 1.21382 * 120.00224 * 5.11050 * 8 7 6 10 10 C 1.49358 * 120.00261 * 185.10788 * 8 7 6 11 11 O 1.21363 * 119.99598 * 359.87248 * 10 8 7 12 12 N 1.34775 * 119.99978 * 179.86489 * 10 8 7 13 13 C 1.46490 * 120.00247 * 354.35509 * 12 10 8 14 14 C 1.46503 * 119.99286 * 174.34665 * 12 10 8 15 15 C 1.50704 * 109.46879 * 90.00899 * 14 12 10 16 16 H 1.07997 * 120.00043 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99943 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99820 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47096 * 59.99703 * 19 17 15 21 21 H 1.48499 * 109.47228 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46912 * 299.99961 * 19 17 15 23 23 C 1.38992 * 119.90043 * 0.02562 * 6 5 4 24 24 C 1.38108 * 120.03184 * 359.97438 * 23 6 5 25 25 C 1.38220 * 120.13365 * 359.72412 * 24 23 6 26 26 C 1.50697 * 119.95585 * 180.29908 * 25 24 23 27 27 H 1.09005 * 109.46927 * 59.99500 * 1 2 3 28 28 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46948 * 300.00207 * 1 2 3 30 30 H 1.08992 * 109.47215 * 120.00585 * 2 1 3 31 31 H 1.09010 * 109.46844 * 240.00429 * 2 1 3 32 32 H 1.08007 * 120.06575 * 359.97438 * 5 4 3 33 33 H 0.96999 * 119.99992 * 324.59563 * 7 6 5 34 34 H 1.09002 * 109.47618 * 84.05459 * 13 12 10 35 35 H 1.09003 * 109.47238 * 204.05522 * 13 12 10 36 36 H 1.09000 * 109.46995 * 324.05113 * 13 12 10 37 37 H 1.09008 * 109.46563 * 210.00249 * 14 12 10 38 38 H 1.08999 * 109.47357 * 330.00338 * 14 12 10 39 39 H 0.97002 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.97742 * 180.02562 * 23 6 5 41 41 H 1.07999 * 119.93007 * 180.02562 * 24 23 6 42 42 H 1.09007 * 109.47199 * 270.26195 * 26 25 24 43 43 H 1.09007 * 109.46936 * 30.25197 * 26 25 24 44 44 H 1.08991 * 109.47472 * 150.25450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1983 0.4263 -0.0005 6 6 5.5740 0.6116 -0.0005 7 7 6.4288 -0.4936 0.0000 8 6 7.5937 -0.4449 -0.6761 9 8 7.9440 0.5885 -1.2079 10 6 8.4537 -1.6623 -0.7709 11 8 8.1047 -2.6948 -0.2371 12 7 9.6173 -1.6142 -1.4493 13 6 9.9801 -0.4077 -2.1968 14 6 10.5193 -2.7686 -1.4391 15 6 10.1784 -3.6826 -2.5877 16 1 9.3704 -3.4292 -3.2580 17 6 10.8980 -4.8424 -2.7829 18 7 11.8822 -5.1507 -1.9669 19 14 10.4750 -5.9758 -4.2062 20 1 10.6266 -5.2397 -5.4870 21 1 11.3901 -7.1452 -4.1967 22 1 9.0723 -6.4431 -4.0669 23 6 6.0999 1.8982 0.0000 24 6 5.2546 2.9904 -0.0001 25 6 3.8845 2.8075 -0.0063 26 6 2.9659 4.0020 -0.0131 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.7869 -0.5724 0.0003 33 1 6.1839 -1.2959 0.4870 34 1 10.4470 0.3106 -1.5229 35 1 10.6797 -0.6688 -2.9908 36 1 9.0835 0.0329 -2.6329 37 1 11.5491 -2.4259 -1.5407 38 1 10.4072 -3.3089 -0.4991 39 1 12.3887 -5.9665 -2.1044 40 1 7.1700 2.0438 -0.0005 41 1 5.6649 3.9894 -0.0001 42 1 2.7431 4.2950 1.0129 43 1 3.4507 4.8302 -0.5302 44 1 2.0396 3.7452 -0.5269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338829578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:51 Heat of formation + Delta-G solvation = -72.276640 kcal Electronic energy + Delta-G solvation = -26429.366803 eV Core-core repulsion = 22540.742449 eV Total energy + Delta-G solvation = -3888.624354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01283 -40.07846 -38.41522 -37.38070 -35.68899 -34.58007 -32.61550 -32.16081 -31.57172 -29.92067 -28.15646 -26.93691 -25.95660 -24.50990 -24.09868 -22.67850 -21.83653 -21.09552 -19.57609 -18.48708 -17.42693 -16.67274 -16.46898 -16.35045 -16.05921 -15.80427 -15.50282 -15.25981 -14.88748 -14.39899 -14.08553 -13.92596 -13.79048 -13.45139 -13.17196 -12.97799 -12.91941 -12.58483 -12.43555 -12.18548 -12.15733 -12.06517 -11.93967 -11.56597 -11.31510 -11.22689 -11.09645 -11.00356 -10.77651 -10.59487 -10.23117 -10.09188 -9.72703 -8.88104 -8.66929 -8.50484 -7.98762 -7.82607 -6.11967 -4.17364 1.00237 1.32010 1.89303 2.63882 2.96356 3.29136 3.33028 3.36257 3.52845 3.73877 3.98383 4.38983 4.57796 4.60597 4.66695 4.75095 4.83206 4.92440 5.04807 5.07848 5.22778 5.24025 5.37309 5.44724 5.44918 5.52795 5.58321 5.68810 5.84242 5.91613 6.05317 6.09609 6.18653 6.29331 6.40257 6.48773 6.69253 6.79552 7.15478 7.21091 7.23690 7.33197 7.79137 7.87489 8.10297 8.15788 8.58031 8.86768 9.47594 10.96274 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002710 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.785231 B =10331.505861 C =11367.942815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.312 6.312 4 C 0.146 3.854 5 C -0.230 4.230 6 C 0.183 3.817 7 N -0.653 5.653 8 C 0.509 3.491 9 O -0.499 6.499 10 C 0.494 3.506 11 O -0.522 6.522 12 N -0.562 5.562 13 C 0.078 3.922 14 C 0.243 3.757 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 C -0.152 4.152 24 C -0.065 4.065 25 C -0.135 4.135 26 C -0.100 4.100 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.132 0.868 33 H 0.422 0.578 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 15.531 5.208 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.226 6.226 4 C 0.100 3.900 5 C -0.251 4.251 6 C 0.088 3.912 7 N -0.300 5.300 8 C 0.293 3.707 9 O -0.373 6.373 10 C 0.274 3.726 11 O -0.399 6.399 12 N -0.293 5.293 13 C -0.065 4.065 14 C 0.124 3.876 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.172 4.172 24 C -0.084 4.084 25 C -0.137 4.137 26 C -0.157 4.157 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.145 15.647 5.097 24.496 hybrid contribution -0.119 -1.453 -0.607 1.580 sum -18.264 14.194 4.489 23.563 Atomic orbital electron populations 1.21767 0.92705 1.02912 1.03412 1.22810 0.95863 0.82022 1.01669 1.86052 1.18704 1.29164 1.88653 1.18411 0.82035 0.92963 0.96609 1.20931 0.92304 0.98875 1.12982 1.17473 0.88511 0.87166 0.98055 1.43268 1.19148 1.16980 1.50555 1.20994 0.81654 0.90014 0.78042 1.90679 1.70855 1.31947 1.43794 1.19519 0.83182 0.87388 0.82507 1.90748 1.70868 1.30911 1.47417 1.48131 1.18318 1.17616 1.45228 1.22052 1.02146 0.86079 0.96217 1.19525 0.87564 0.81523 0.98948 1.21334 1.17274 1.06039 1.12239 0.92299 1.24929 0.94831 0.97480 0.96730 1.69916 1.20623 1.25463 1.37229 0.86507 0.78418 0.79987 0.82237 1.20140 1.21089 1.20112 1.21240 1.01556 0.90388 1.04060 1.20770 0.91341 0.98896 0.97405 1.19243 0.94282 0.92443 1.07702 1.20552 0.98479 0.94653 1.02007 0.91552 0.90341 0.91559 0.91913 0.91892 0.85004 0.73981 0.93074 0.91025 0.89998 0.94065 0.93536 0.92499 0.83951 0.84980 0.91671 0.91800 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.29 9.17 -19.42 -0.18 -3.47 16 4 C 0.15 1.70 6.65 -39.25 -0.26 1.44 16 5 C -0.23 -2.74 8.95 -39.23 -0.35 -3.09 16 6 C 0.18 2.47 6.29 -83.77 -0.53 1.94 16 7 N -0.65 -9.46 5.32 -10.31 -0.05 -9.52 16 8 C 0.51 8.80 7.61 -11.63 -0.09 8.71 16 9 O -0.50 -8.71 10.71 5.47 0.06 -8.65 16 10 C 0.49 10.33 7.72 -11.63 -0.09 10.24 16 11 O -0.52 -12.24 16.12 5.49 0.09 -12.16 16 12 N -0.56 -12.23 2.86 -183.50 -0.52 -12.76 16 13 C 0.08 1.40 9.27 59.84 0.55 1.96 16 14 C 0.24 6.26 5.09 -5.19 -0.03 6.23 16 15 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.15 -2.00 8.70 -39.35 -0.34 -2.35 16 24 C -0.07 -0.73 9.69 -39.64 -0.38 -1.11 16 25 C -0.14 -1.49 5.90 -104.43 -0.62 -2.11 16 26 C -0.10 -0.86 9.78 36.00 0.35 -0.51 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.06 0.49 7.66 -51.92 -0.40 0.10 16 32 H 0.13 1.35 6.30 -52.48 -0.33 1.02 16 33 H 0.42 5.56 8.30 -40.82 -0.34 5.22 16 34 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 35 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 36 H 0.08 1.43 5.84 -51.93 -0.30 1.13 16 37 H 0.04 1.07 8.07 -51.92 -0.42 0.65 16 38 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.14 2.00 6.23 -52.49 -0.33 1.67 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 44 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -32.07 370.63 -7.14 -39.20 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.21 Total: 2.58 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.61 Total: 7.93 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.16 Total: -47.59 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.03 Total: -24.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.07 -7.14 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338829578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.073 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds