Wall clock time and date at job start Tue Mar 31 2020 12:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47565 * 2 1 4 4 C 1.35897 * 117.00174 * 180.02562 * 3 2 1 5 5 C 1.38602 * 120.01922 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.87433 * 180.02562 * 5 4 3 7 7 N 1.39721 * 120.04828 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99701 * 144.60023 * 7 6 5 9 9 O 1.21382 * 120.00224 * 5.11050 * 8 7 6 10 10 C 1.49358 * 120.00261 * 185.10788 * 8 7 6 11 11 O 1.21363 * 119.99598 * 359.87248 * 10 8 7 12 12 N 1.34775 * 119.99978 * 179.86489 * 10 8 7 13 13 C 1.46490 * 120.00247 * 354.35509 * 12 10 8 14 14 C 1.46503 * 119.99286 * 174.34665 * 12 10 8 15 15 C 1.50704 * 109.46879 * 90.00899 * 14 12 10 16 16 H 1.07997 * 120.00043 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99943 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99820 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47096 * 59.99703 * 19 17 15 21 21 H 1.48499 * 109.47228 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46912 * 299.99961 * 19 17 15 23 23 C 1.38992 * 119.90043 * 0.02562 * 6 5 4 24 24 C 1.38108 * 120.03184 * 359.97438 * 23 6 5 25 25 C 1.38220 * 120.13365 * 359.72412 * 24 23 6 26 26 C 1.50697 * 119.95585 * 180.29908 * 25 24 23 27 27 H 1.09005 * 109.46927 * 59.99500 * 1 2 3 28 28 H 1.09001 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46948 * 300.00207 * 1 2 3 30 30 H 1.08992 * 109.47215 * 120.00585 * 2 1 3 31 31 H 1.09010 * 109.46844 * 240.00429 * 2 1 3 32 32 H 1.08007 * 120.06575 * 359.97438 * 5 4 3 33 33 H 0.96999 * 119.99992 * 324.59563 * 7 6 5 34 34 H 1.09002 * 109.47618 * 84.05459 * 13 12 10 35 35 H 1.09003 * 109.47238 * 204.05522 * 13 12 10 36 36 H 1.09000 * 109.46995 * 324.05113 * 13 12 10 37 37 H 1.09008 * 109.46563 * 210.00249 * 14 12 10 38 38 H 1.08999 * 109.47357 * 330.00338 * 14 12 10 39 39 H 0.97002 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.97742 * 180.02562 * 23 6 5 41 41 H 1.07999 * 119.93007 * 180.02562 * 24 23 6 42 42 H 1.09007 * 109.47199 * 270.26195 * 26 25 24 43 43 H 1.09007 * 109.46936 * 30.25197 * 26 25 24 44 44 H 1.08991 * 109.47472 * 150.25450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1983 0.4263 -0.0005 6 6 5.5740 0.6116 -0.0005 7 7 6.4288 -0.4936 0.0000 8 6 7.5937 -0.4449 -0.6761 9 8 7.9440 0.5885 -1.2079 10 6 8.4537 -1.6623 -0.7709 11 8 8.1047 -2.6948 -0.2371 12 7 9.6173 -1.6142 -1.4493 13 6 9.9801 -0.4077 -2.1968 14 6 10.5193 -2.7686 -1.4391 15 6 10.1784 -3.6826 -2.5877 16 1 9.3704 -3.4292 -3.2580 17 6 10.8980 -4.8424 -2.7829 18 7 11.8822 -5.1507 -1.9669 19 14 10.4750 -5.9758 -4.2062 20 1 10.6266 -5.2397 -5.4870 21 1 11.3901 -7.1452 -4.1967 22 1 9.0723 -6.4431 -4.0669 23 6 6.0999 1.8982 0.0000 24 6 5.2546 2.9904 -0.0001 25 6 3.8845 2.8075 -0.0063 26 6 2.9659 4.0020 -0.0131 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.7869 -0.5724 0.0003 33 1 6.1839 -1.2959 0.4870 34 1 10.4470 0.3106 -1.5229 35 1 10.6797 -0.6688 -2.9908 36 1 9.0835 0.0329 -2.6329 37 1 11.5491 -2.4259 -1.5407 38 1 10.4072 -3.3089 -0.4991 39 1 12.3887 -5.9665 -2.1044 40 1 7.1700 2.0438 -0.0005 41 1 5.6649 3.9894 -0.0001 42 1 2.7431 4.2950 1.0129 43 1 3.4507 4.8302 -0.5302 44 1 2.0396 3.7452 -0.5269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338829578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:51 Heat of formation + Delta-G solvation = -92.283796 kcal Electronic energy + Delta-G solvation = -26430.234379 eV Core-core repulsion = 22540.742449 eV Total energy + Delta-G solvation = -3889.491930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25425 -41.15516 -39.81802 -38.46082 -37.17435 -35.98311 -34.68558 -32.92216 -32.39550 -30.77111 -30.11130 -28.17286 -27.33947 -25.98760 -25.01926 -24.09000 -22.84372 -22.11204 -20.98436 -19.50913 -18.87171 -18.75432 -17.78861 -17.32626 -17.07358 -16.98474 -16.83607 -16.69540 -16.26140 -16.02136 -15.28583 -14.93395 -14.73918 -14.67301 -14.44884 -14.20276 -13.88848 -13.70171 -13.58003 -13.47714 -13.34916 -13.25586 -12.97173 -12.91358 -12.76030 -12.62071 -12.40991 -12.25615 -12.18566 -11.98333 -11.81099 -11.75915 -11.12448 -10.66463 -10.39844 -9.68352 -9.59618 -8.91025 -8.26120 -6.40771 -0.09351 0.38972 0.56042 1.24949 1.38410 1.41220 1.49468 2.08148 2.21844 2.35793 2.54691 2.70648 3.04514 3.23700 3.78557 3.92030 4.04789 4.11907 4.15490 4.24950 4.35319 4.38244 4.43336 4.52449 4.67352 4.77248 4.83874 4.88250 4.90842 4.94344 4.94891 5.03812 5.11167 5.13220 5.24053 5.34568 5.36936 5.42340 5.53274 5.66941 5.78112 5.94583 5.97474 6.31626 6.40242 6.61648 6.67425 6.94072 7.29497 8.81416 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002710 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.785231 B =10331.505861 C =11367.942815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.042 3.958 3 O -0.317 6.317 4 C 0.138 3.862 5 C -0.228 4.228 6 C 0.159 3.841 7 N -0.638 5.638 8 C 0.520 3.480 9 O -0.501 6.501 10 C 0.489 3.511 11 O -0.555 6.555 12 N -0.571 5.571 13 C 0.081 3.919 14 C 0.256 3.744 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.165 4.165 24 C -0.063 4.063 25 C -0.136 4.136 26 C -0.098 4.098 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.427 0.573 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.012 0.988 39 H 0.269 0.731 40 H 0.132 0.868 41 H 0.158 0.842 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 16.727 4.486 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.231 6.231 4 C 0.092 3.908 5 C -0.249 4.249 6 C 0.065 3.935 7 N -0.285 5.285 8 C 0.303 3.697 9 O -0.376 6.376 10 C 0.270 3.730 11 O -0.435 6.435 12 N -0.302 5.302 13 C -0.060 4.060 14 C 0.136 3.864 15 C -0.587 4.587 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.185 4.185 24 C -0.082 4.082 25 C -0.137 4.137 26 C -0.155 4.155 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.266 0.734 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.176 0.824 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.976 16.887 4.379 26.521 hybrid contribution 0.335 -1.756 -0.313 1.814 sum -19.641 15.131 4.067 25.125 Atomic orbital electron populations 1.21783 0.91133 1.04048 1.03426 1.23062 0.97153 0.81017 1.02017 1.86063 1.17946 1.30689 1.88423 1.18603 0.82602 0.93188 0.96440 1.21041 0.91655 0.99850 1.12386 1.17618 0.88888 0.86783 1.00220 1.43077 1.18209 1.17685 1.49542 1.20094 0.82200 0.88441 0.78987 1.90675 1.71150 1.31303 1.44428 1.20144 0.83085 0.88337 0.81395 1.90716 1.71666 1.32609 1.48497 1.48115 1.18337 1.17687 1.46052 1.22185 1.02680 0.84834 0.96332 1.19061 0.88125 0.82526 0.96676 1.21585 1.17276 1.07011 1.12800 0.92889 1.25809 0.94570 0.98940 0.99373 1.70023 1.21433 1.26098 1.38792 0.85464 0.78055 0.78070 0.79228 1.18779 1.20138 1.20108 1.21277 1.01392 0.90954 1.04850 1.21030 0.91224 0.99472 0.96432 1.19635 0.94721 0.93204 1.06164 1.20602 0.97917 0.94062 1.02910 0.91680 0.88656 0.91380 0.91236 0.91876 0.83782 0.73411 0.91126 0.90946 0.89179 0.94611 0.96961 0.92159 0.85051 0.82431 0.90577 0.90136 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.32 -6.16 9.17 -92.39 -0.85 -7.00 16 4 C 0.14 2.99 6.65 22.49 0.15 3.14 16 5 C -0.23 -5.19 8.95 22.49 0.20 -4.99 16 6 C 0.16 4.17 6.29 38.20 0.24 4.41 16 7 N -0.64 -18.38 5.32 -304.87 -1.62 -20.00 16 8 C 0.52 17.95 7.61 87.24 0.66 18.62 16 9 O -0.50 -17.17 10.71 -3.35 -0.04 -17.20 16 10 C 0.49 20.85 7.72 87.24 0.67 21.53 16 11 O -0.56 -26.91 16.12 -3.29 -0.05 -26.96 16 12 N -0.57 -25.34 2.86 -852.83 -2.44 -27.78 16 13 C 0.08 2.89 9.27 127.77 1.18 4.07 16 14 C 0.26 13.66 5.09 85.63 0.44 14.09 16 15 C -0.55 -31.28 9.39 25.60 0.24 -31.04 16 16 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 17 C 0.01 0.73 5.46 84.66 0.46 1.19 16 18 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 19 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.16 -4.16 8.70 22.42 0.19 -3.97 16 24 C -0.06 -1.28 9.69 22.23 0.22 -1.06 16 25 C -0.14 -2.71 5.90 -19.74 -0.12 -2.83 16 26 C -0.10 -1.42 9.78 71.23 0.70 -0.73 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 32 H 0.14 2.79 6.30 -2.91 -0.02 2.77 16 33 H 0.43 11.28 8.30 -92.71 -0.77 10.51 16 34 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.07 2.53 8.03 -2.39 -0.02 2.51 16 36 H 0.09 3.07 5.84 -2.39 -0.01 3.05 16 37 H 0.04 1.92 8.07 -2.38 -0.02 1.90 16 38 H 0.01 0.73 7.51 -2.39 -0.02 0.71 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.13 3.60 6.23 -2.91 -0.02 3.58 16 41 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 44 H 0.06 1.00 7.53 -2.39 -0.02 0.98 16 Total: -1.00 -69.12 370.63 3.95 -65.17 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.26 Total: 19.18 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 6.37 Total: 22.69 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.77 Total: -102.12 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -0.94 Total: -51.17 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.12 3.95 -65.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338829578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.109 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds