Wall clock time and date at job start Tue Mar 31 2020 12:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21312 * 119.99898 * 2 1 4 4 C 1.46744 * 120.00354 * 180.02562 * 2 1 3 5 5 C 1.40140 * 120.09179 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.89967 * 179.97438 * 5 4 2 7 7 C 1.39339 * 120.09914 * 0.02562 * 6 5 4 8 8 N 1.38888 * 119.90632 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99795 * 354.12894 * 8 7 6 10 10 C 1.53000 * 109.46913 * 179.97438 * 9 8 7 11 11 C 1.53007 * 109.46872 * 299.99396 * 10 9 8 12 12 C 1.53001 * 109.47515 * 59.99259 * 10 9 8 13 13 C 1.52998 * 109.47420 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.47525 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99897 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00089 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47148 * 90.00078 * 18 16 14 20 20 H 1.48498 * 109.47182 * 210.00247 * 18 16 14 21 21 H 1.48503 * 109.47169 * 330.00350 * 18 16 14 22 22 C 1.39296 * 120.18703 * 0.22991 * 7 6 5 23 23 N 1.48018 * 119.94885 * 179.71987 * 22 7 6 24 24 O 1.21795 * 119.99971 * 322.27706 * 23 22 7 25 25 O 1.21798 * 119.99710 * 142.27046 * 23 22 7 26 26 C 1.36563 * 120.09830 * 359.48947 * 22 7 6 27 27 H 1.09002 * 109.47179 * 269.99880 * 1 2 3 28 28 H 1.08997 * 109.47409 * 29.99714 * 1 2 3 29 29 H 1.08998 * 109.46914 * 150.00031 * 1 2 3 30 30 H 1.07993 * 120.04726 * 359.95489 * 5 4 2 31 31 H 1.08001 * 119.95002 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99891 * 174.11760 * 8 7 6 33 33 H 1.08994 * 109.47814 * 59.99001 * 9 8 7 34 34 H 1.09001 * 109.47053 * 299.98820 * 9 8 7 35 35 H 1.08995 * 109.47344 * 60.00412 * 11 10 9 36 36 H 1.09005 * 109.47119 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.46775 * 300.00097 * 11 10 9 38 38 H 1.09003 * 109.46824 * 60.00082 * 12 10 9 39 39 H 1.08995 * 109.47119 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46939 * 300.00332 * 12 10 9 41 41 H 1.09003 * 109.46885 * 299.99897 * 13 10 9 42 42 H 1.09003 * 109.47438 * 59.99458 * 13 10 9 43 43 H 0.97012 * 119.99389 * 179.97438 * 17 16 14 44 44 H 1.07994 * 120.04638 * 180.23439 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2408 -1.2708 -0.0006 5 6 1.5422 -2.4856 -0.0006 6 6 2.2288 -3.6656 -0.0016 7 6 3.6222 -3.6633 -0.0022 8 7 4.3167 -4.8660 -0.0027 9 6 3.5900 -6.1315 0.1271 10 6 4.5830 -7.2951 0.0972 11 6 5.3472 -7.2795 -1.2283 12 6 5.5707 -7.1527 1.2570 13 6 3.8243 -8.6167 0.2334 14 6 4.8022 -9.7629 0.2033 15 1 5.8593 -9.5681 0.0980 16 6 4.3475 -11.0601 0.3112 17 7 3.0604 -11.2971 0.4399 18 14 5.5599 -12.4808 0.2747 19 1 6.0071 -12.7855 1.6575 20 1 4.9022 -13.6779 -0.3081 21 1 6.7342 -12.1082 -0.5545 22 6 4.3206 -2.4580 0.0032 23 7 5.8008 -2.4617 0.0089 24 8 6.4052 -3.2990 0.6547 25 8 6.4142 -1.6275 -0.6324 26 6 3.6417 -1.2731 -0.0015 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4622 -2.4883 0.0006 31 1 1.6912 -4.6023 -0.0012 32 1 5.2828 -4.8682 -0.0892 33 1 2.8867 -6.2331 -0.6993 34 1 3.0454 -6.1425 1.0712 35 1 5.8878 -6.3380 -1.3249 36 1 6.0543 -8.1088 -1.2498 37 1 4.6435 -7.3809 -2.0545 38 1 5.0263 -7.1639 2.2012 39 1 6.2783 -7.9815 1.2353 40 1 6.1113 -6.2112 1.1603 41 1 3.2801 -8.6276 1.1778 42 1 3.1204 -8.7184 -0.5927 43 1 2.7405 -12.2098 0.5154 44 1 4.1840 -0.3392 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340906876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:16 Heat of formation + Delta-G solvation = -29.979084 kcal Electronic energy + Delta-G solvation = -26861.536508 eV Core-core repulsion = 22974.746313 eV Total energy + Delta-G solvation = -3886.790195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32673 -40.44184 -39.16821 -37.71251 -36.58499 -34.84460 -32.78361 -32.35702 -30.93612 -29.46193 -27.24431 -26.68711 -26.64075 -26.11909 -23.74905 -23.14052 -22.14682 -20.70796 -19.05175 -18.77020 -18.27106 -17.80089 -17.36527 -16.56930 -16.38858 -16.02575 -15.36285 -15.14589 -14.87471 -14.73425 -14.52528 -14.07120 -13.61081 -13.53134 -13.14462 -12.99822 -12.79020 -12.64291 -12.38911 -12.17935 -12.00224 -11.64228 -11.43089 -11.18615 -11.15970 -11.11927 -10.94277 -10.78378 -10.59914 -10.54257 -10.36821 -10.12857 -10.01800 -9.94475 -9.38950 -9.09279 -8.47265 -8.05737 -6.12078 -4.13267 -0.02521 0.33709 1.06853 1.33873 2.00445 2.93643 3.18126 3.24705 3.32057 3.34535 3.69266 4.05226 4.33731 4.36784 4.59615 4.62175 4.68114 4.94418 5.02059 5.10223 5.22058 5.23079 5.29059 5.34224 5.41225 5.53698 5.69523 5.72813 5.81549 5.92779 5.97424 6.06685 6.21969 6.27776 6.46067 6.50785 6.68334 6.88379 6.93032 6.96885 7.18847 7.20468 7.45245 7.56332 7.57699 7.85896 8.27157 8.90819 9.50928 10.99337 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.002844 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.253806 B = 9841.242556 C =10971.240001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.404 3.596 3 O -0.468 6.468 4 C -0.247 4.247 5 C 0.018 3.982 6 C -0.208 4.208 7 C 0.312 3.688 8 N -0.694 5.694 9 C 0.114 3.886 10 C -0.071 4.071 11 C -0.130 4.130 12 C -0.132 4.132 13 C 0.038 3.962 14 C -0.513 4.513 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.141 4.141 23 N 0.038 4.962 24 O -0.175 6.175 25 O -0.155 6.155 26 C 0.049 3.951 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.415 0.585 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 17.994 -1.006 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.284 3.716 3 O -0.344 6.344 4 C -0.252 4.252 5 C -0.001 4.001 6 C -0.231 4.231 7 C 0.193 3.807 8 N -0.317 5.317 9 C -0.008 4.008 10 C -0.071 4.071 11 C -0.187 4.187 12 C -0.190 4.190 13 C 0.001 3.999 14 C -0.551 4.551 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.231 4.231 23 N 0.555 4.445 24 O -0.384 6.384 25 O -0.373 6.373 26 C 0.030 3.970 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.851 18.084 -0.950 19.362 hybrid contribution 1.317 -1.060 -0.023 1.691 sum -5.535 17.024 -0.972 17.928 Atomic orbital electron populations 1.22224 0.93447 1.05039 1.04899 1.22144 0.91603 0.87045 0.70847 1.90573 1.72065 1.34232 1.37572 1.20028 0.92347 0.95688 1.17103 1.21287 1.00761 0.90456 0.87631 1.20560 0.90211 1.00501 1.11864 1.17864 0.92226 0.84489 0.86161 1.45873 1.11381 1.03565 1.70856 1.22092 0.95799 0.81205 1.01713 1.20925 0.95226 0.95333 0.95663 1.21793 1.00301 1.00170 0.96472 1.21808 0.99216 1.00587 0.97361 1.19091 0.95063 0.88413 0.97337 1.21156 0.93463 0.90588 1.49936 0.92156 1.24994 0.95052 0.98989 0.95323 1.69949 1.12891 1.20416 1.50195 0.86627 0.81279 0.82066 0.78266 1.20661 1.21278 1.19868 1.20058 0.79007 0.95509 1.28487 1.43461 1.03339 0.99556 0.98115 1.94515 1.69740 1.33136 1.41038 1.94542 1.68857 1.33265 1.40672 1.20607 0.93924 0.96313 0.86181 0.88319 0.89293 0.89436 0.83412 0.82870 0.74359 0.91012 0.90743 0.95446 0.90874 0.93273 0.93223 0.91102 0.94460 0.96246 0.96344 0.92962 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.96 9.75 36.01 0.35 -0.61 16 2 C 0.40 3.63 7.21 -30.87 -0.22 3.40 16 3 O -0.47 -5.94 17.08 5.53 0.09 -5.85 16 4 C -0.25 -2.30 5.87 -105.05 -0.62 -2.91 16 5 C 0.02 0.13 9.31 -39.49 -0.37 -0.23 16 6 C -0.21 -1.93 9.24 -39.79 -0.37 -2.29 16 7 C 0.31 3.77 6.61 -83.86 -0.55 3.22 16 8 N -0.69 -9.27 4.88 -58.63 -0.29 -9.55 16 9 C 0.11 1.60 3.82 -4.04 -0.02 1.59 16 10 C -0.07 -1.24 0.54 -154.51 -0.08 -1.32 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 12 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 13 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 14 C -0.51 -12.99 7.65 -34.44 -0.26 -13.25 16 15 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -25.15 13.29 55.43 0.74 -24.41 16 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.14 -1.83 6.47 -80.16 -0.52 -2.35 16 23 N 0.04 0.57 4.27 33.86 0.14 0.72 16 24 O -0.17 -2.80 16.75 -29.46 -0.49 -3.29 16 25 O -0.15 -2.41 18.92 -29.46 -0.56 -2.97 16 26 C 0.05 0.57 9.15 -39.49 -0.36 0.21 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.24 6.45 -51.93 -0.34 -0.10 16 30 H 0.15 0.52 6.34 -52.49 -0.33 0.19 16 31 H 0.15 1.22 6.69 -52.49 -0.35 0.87 16 32 H 0.41 6.00 3.75 -40.82 -0.15 5.85 16 33 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 34 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 36 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.04 0.58 6.86 -51.93 -0.36 0.23 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 6.99 8.31 -40.81 -0.34 6.65 16 44 H 0.15 1.77 7.57 -52.49 -0.40 1.37 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -30.18 363.70 -8.29 -38.48 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.76 Total: 2.09 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.63 Total: -16.26 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.60 Total: -33.24 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.96 Total: -12.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.18 -8.29 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340906876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.500 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds