Wall clock time and date at job start Tue Mar 31 2020 12:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21312 * 119.99898 * 2 1 4 4 C 1.46744 * 120.00354 * 180.02562 * 2 1 3 5 5 C 1.40140 * 120.09179 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.89967 * 179.97438 * 5 4 2 7 7 C 1.39339 * 120.09914 * 0.02562 * 6 5 4 8 8 N 1.38888 * 119.90632 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99795 * 354.12894 * 8 7 6 10 10 C 1.53000 * 109.46913 * 179.97438 * 9 8 7 11 11 C 1.53007 * 109.46872 * 299.99396 * 10 9 8 12 12 C 1.53001 * 109.47515 * 59.99259 * 10 9 8 13 13 C 1.52998 * 109.47420 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.47525 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99897 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00089 * 179.97438 * 14 13 10 17 17 N 1.31511 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47148 * 90.00078 * 18 16 14 20 20 H 1.48498 * 109.47182 * 210.00247 * 18 16 14 21 21 H 1.48503 * 109.47169 * 330.00350 * 18 16 14 22 22 C 1.39296 * 120.18703 * 0.22991 * 7 6 5 23 23 N 1.48018 * 119.94885 * 179.71987 * 22 7 6 24 24 O 1.21795 * 119.99971 * 322.27706 * 23 22 7 25 25 O 1.21798 * 119.99710 * 142.27046 * 23 22 7 26 26 C 1.36563 * 120.09830 * 359.48947 * 22 7 6 27 27 H 1.09002 * 109.47179 * 269.99880 * 1 2 3 28 28 H 1.08997 * 109.47409 * 29.99714 * 1 2 3 29 29 H 1.08998 * 109.46914 * 150.00031 * 1 2 3 30 30 H 1.07993 * 120.04726 * 359.95489 * 5 4 2 31 31 H 1.08001 * 119.95002 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99891 * 174.11760 * 8 7 6 33 33 H 1.08994 * 109.47814 * 59.99001 * 9 8 7 34 34 H 1.09001 * 109.47053 * 299.98820 * 9 8 7 35 35 H 1.08995 * 109.47344 * 60.00412 * 11 10 9 36 36 H 1.09005 * 109.47119 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.46775 * 300.00097 * 11 10 9 38 38 H 1.09003 * 109.46824 * 60.00082 * 12 10 9 39 39 H 1.08995 * 109.47119 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46939 * 300.00332 * 12 10 9 41 41 H 1.09003 * 109.46885 * 299.99897 * 13 10 9 42 42 H 1.09003 * 109.47438 * 59.99458 * 13 10 9 43 43 H 0.97012 * 119.99389 * 179.97438 * 17 16 14 44 44 H 1.07994 * 120.04638 * 180.23439 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2408 -1.2708 -0.0006 5 6 1.5422 -2.4856 -0.0006 6 6 2.2288 -3.6656 -0.0016 7 6 3.6222 -3.6633 -0.0022 8 7 4.3167 -4.8660 -0.0027 9 6 3.5900 -6.1315 0.1271 10 6 4.5830 -7.2951 0.0972 11 6 5.3472 -7.2795 -1.2283 12 6 5.5707 -7.1527 1.2570 13 6 3.8243 -8.6167 0.2334 14 6 4.8022 -9.7629 0.2033 15 1 5.8593 -9.5681 0.0980 16 6 4.3475 -11.0601 0.3112 17 7 3.0604 -11.2971 0.4399 18 14 5.5599 -12.4808 0.2747 19 1 6.0071 -12.7855 1.6575 20 1 4.9022 -13.6779 -0.3081 21 1 6.7342 -12.1082 -0.5545 22 6 4.3206 -2.4580 0.0032 23 7 5.8008 -2.4617 0.0089 24 8 6.4052 -3.2990 0.6547 25 8 6.4142 -1.6275 -0.6324 26 6 3.6417 -1.2731 -0.0015 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4622 -2.4883 0.0006 31 1 1.6912 -4.6023 -0.0012 32 1 5.2828 -4.8682 -0.0892 33 1 2.8867 -6.2331 -0.6993 34 1 3.0454 -6.1425 1.0712 35 1 5.8878 -6.3380 -1.3249 36 1 6.0543 -8.1088 -1.2498 37 1 4.6435 -7.3809 -2.0545 38 1 5.0263 -7.1639 2.2012 39 1 6.2783 -7.9815 1.2353 40 1 6.1113 -6.2112 1.1603 41 1 3.2801 -8.6276 1.1778 42 1 3.1204 -8.7184 -0.5927 43 1 2.7405 -12.2098 0.5154 44 1 4.1840 -0.3392 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340906876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:15 Heat of formation + Delta-G solvation = -45.784665 kcal Electronic energy + Delta-G solvation = -26862.221889 eV Core-core repulsion = 22974.746313 eV Total energy + Delta-G solvation = -3887.475576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.41167 -41.29576 -40.10667 -38.88313 -37.75460 -36.03522 -34.35517 -33.47954 -31.68734 -30.27757 -28.96857 -28.05877 -27.84777 -27.10883 -25.16343 -24.13141 -23.30946 -21.59780 -20.12709 -19.88032 -19.42097 -18.91549 -18.37810 -18.25121 -17.30395 -16.97342 -16.50964 -16.15860 -15.99494 -15.89275 -15.58634 -14.98873 -14.77734 -14.72745 -14.47953 -14.02276 -13.95166 -13.78626 -13.37405 -13.00241 -12.91784 -12.83463 -12.76675 -12.71330 -12.69276 -12.40040 -12.37554 -12.33596 -12.14795 -11.99450 -11.73042 -11.31324 -11.05752 -10.89875 -10.86231 -10.76482 -10.50215 -8.98367 -8.15474 -6.20588 -1.06223 -0.47101 0.12886 0.32679 1.26566 1.40646 1.42838 1.51206 1.93749 2.42348 2.43814 3.00342 3.19621 3.20090 3.67736 3.75378 3.81424 3.91072 4.00435 4.02119 4.16647 4.38334 4.50117 4.55936 4.61476 4.66305 4.70974 4.81853 4.83352 4.87095 4.97381 5.04020 5.05966 5.12340 5.30283 5.31435 5.39642 5.43963 5.47325 5.54149 5.74327 5.76697 5.89662 6.11957 6.32857 6.38476 6.53844 6.93081 7.46608 8.96180 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.002844 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.253806 B = 9841.242556 C =10971.240001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.405 3.595 3 O -0.513 6.513 4 C -0.241 4.241 5 C 0.044 3.956 6 C -0.205 4.205 7 C 0.300 3.700 8 N -0.703 5.703 9 C 0.127 3.873 10 C -0.065 4.065 11 C -0.125 4.125 12 C -0.127 4.127 13 C 0.046 3.954 14 C -0.517 4.517 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.153 4.153 23 N 0.041 4.959 24 O -0.196 6.196 25 O -0.178 6.178 26 C 0.032 3.968 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.174 0.826 32 H 0.407 0.593 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.052 0.948 41 H -0.001 1.001 42 H 0.000 1.000 43 H 0.260 0.740 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 18.633 -1.151 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.287 3.713 3 O -0.393 6.393 4 C -0.245 4.245 5 C 0.025 3.975 6 C -0.228 4.228 7 C 0.183 3.817 8 N -0.326 5.326 9 C 0.005 3.995 10 C -0.066 4.066 11 C -0.182 4.182 12 C -0.184 4.184 13 C 0.008 3.992 14 C -0.555 4.555 15 H 0.080 0.920 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.773 3.227 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.243 4.243 23 N 0.552 4.448 24 O -0.403 6.403 25 O -0.393 6.393 26 C 0.013 3.987 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.217 0.783 31 H 0.191 0.809 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.069 0.931 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.081 18.745 -1.097 20.858 hybrid contribution 1.916 -1.152 0.025 2.236 sum -7.165 17.593 -1.072 19.026 Atomic orbital electron populations 1.22296 0.89373 1.06718 1.06616 1.22841 0.93624 0.85882 0.68945 1.90575 1.73369 1.35635 1.39726 1.20369 0.91348 0.97233 1.15539 1.21785 1.03013 0.88407 0.84269 1.20923 0.88794 1.02187 1.10858 1.18130 0.93330 0.83420 0.86845 1.45680 1.10940 1.03665 1.72355 1.21823 0.94699 0.80239 1.02789 1.20710 0.95529 0.94460 0.95883 1.21712 0.99952 1.00253 0.96295 1.21727 0.98848 1.00539 0.97283 1.18922 0.94407 0.90448 0.95397 1.21573 0.94139 0.91563 1.48272 0.92033 1.25746 0.96458 1.01562 0.95559 1.70055 1.14445 1.20770 1.51889 0.85715 0.79451 0.79227 0.78275 1.20368 1.21271 1.19205 1.20207 0.77301 0.96553 1.30199 1.43805 1.04435 0.99006 0.97515 1.94487 1.70677 1.33564 1.41557 1.94519 1.69792 1.33723 1.41254 1.20691 0.95261 0.95409 0.87379 0.86263 0.89149 0.86308 0.78298 0.80861 0.75236 0.89691 0.89915 0.93661 0.92927 0.93115 0.93366 0.93071 0.92918 0.98221 0.98118 0.93086 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.95 9.75 71.24 0.69 -0.26 16 2 C 0.40 6.18 7.21 27.91 0.20 6.38 16 3 O -0.51 -12.66 17.08 -3.13 -0.05 -12.72 16 4 C -0.24 -3.80 5.87 -20.14 -0.12 -3.91 16 5 C 0.04 0.43 9.31 22.33 0.21 0.63 16 6 C -0.20 -2.98 9.24 22.13 0.20 -2.77 16 7 C 0.30 6.69 6.61 38.54 0.25 6.95 16 8 N -0.70 -17.75 4.88 -339.40 -1.66 -19.41 16 9 C 0.13 3.33 3.82 86.38 0.33 3.66 16 10 C -0.07 -2.24 0.54 -52.18 -0.03 -2.27 16 11 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 12 C -0.13 -4.33 8.05 71.98 0.58 -3.75 16 13 C 0.05 2.06 4.04 29.85 0.12 2.18 16 14 C -0.52 -26.38 7.65 25.60 0.20 -26.19 16 15 H 0.06 3.07 5.68 -2.91 -0.02 3.05 16 16 C 0.00 0.23 5.46 84.66 0.46 0.70 16 17 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 18 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 C -0.15 -3.90 6.47 36.24 0.23 -3.67 16 23 N 0.04 1.25 4.27 -46.79 -0.20 1.05 16 24 O -0.20 -6.42 16.75 18.89 0.32 -6.11 16 25 O -0.18 -5.78 18.92 18.89 0.36 -5.42 16 26 C 0.03 0.73 9.15 22.33 0.20 0.93 16 27 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.12 -0.15 6.45 -2.39 -0.02 -0.16 16 30 H 0.20 -0.10 6.34 -2.91 -0.02 -0.11 16 31 H 0.17 1.91 6.69 -2.91 -0.02 1.89 16 32 H 0.41 11.51 3.75 -92.71 -0.35 11.16 16 33 H 0.08 2.01 7.70 -2.39 -0.02 1.99 16 34 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 35 H 0.04 1.34 6.86 -2.39 -0.02 1.33 16 36 H 0.05 1.96 6.62 -2.38 -0.02 1.94 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 40 H 0.05 1.63 6.86 -2.39 -0.02 1.61 16 41 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 44 H 0.14 3.42 7.57 -2.91 -0.02 3.40 16 Total: -1.00 -68.82 363.70 5.89 -62.93 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.69 Total: 12.77 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.12 Total: -24.98 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.57 Total: -70.92 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.62 Total: -24.25 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -68.82 5.89 -62.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340906876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds