Wall clock time and date at job start Tue Mar 31 2020 13:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45205 * 109.46675 * 2 1 4 4 C 1.34757 * 116.99693 * 179.97438 * 3 2 1 5 5 O 1.21518 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.47379 * 120.00230 * 179.97438 * 4 3 2 7 7 C 1.39748 * 120.19973 * 355.05253 * 6 4 3 8 8 C 1.37777 * 119.91315 * 179.97438 * 7 6 4 9 9 C 1.38581 * 120.33989 * 359.97438 * 8 7 6 10 10 C 1.38015 * 120.41607 * 359.97438 * 9 8 7 11 11 C 1.38856 * 120.07745 * 359.97438 * 10 9 8 12 12 N 1.39251 * 120.16822 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00095 * 34.93523 * 12 11 10 14 14 O 1.21278 * 120.00451 * 5.27811 * 13 12 11 15 15 C 1.50697 * 119.99798 * 185.27074 * 13 12 11 16 16 N 1.46908 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.46900 * 110.99623 * 66.04597 * 16 15 13 18 18 C 1.46900 * 111.00068 * 190.00319 * 16 15 13 19 19 C 1.50702 * 109.46856 * 170.00234 * 18 16 15 20 20 H 1.08004 * 119.99831 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00177 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99329 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00160 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47431 * 90.00148 * 23 21 19 25 25 H 1.48504 * 109.47147 * 210.00071 * 23 21 19 26 26 H 1.48505 * 109.47292 * 329.99678 * 23 21 19 27 27 H 1.09000 * 109.47183 * 60.00197 * 1 2 3 28 28 H 1.09000 * 109.46414 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47432 * 299.99715 * 1 2 3 30 30 H 1.08990 * 109.47306 * 239.99912 * 2 1 3 31 31 H 1.09007 * 109.46803 * 119.99708 * 2 1 3 32 32 H 1.07999 * 120.04839 * 359.97438 * 7 6 4 33 33 H 1.08001 * 119.83276 * 180.02562 * 8 7 6 34 34 H 1.07994 * 119.79331 * 180.02562 * 9 8 7 35 35 H 1.08002 * 119.96385 * 179.72296 * 10 9 8 36 36 H 0.97003 * 119.99769 * 214.92694 * 12 11 10 37 37 H 1.08990 * 109.47631 * 299.99984 * 15 13 12 38 38 H 1.09001 * 109.47340 * 60.00746 * 15 13 12 39 39 H 1.09000 * 109.46980 * 60.00276 * 17 16 15 40 40 H 1.08999 * 109.47062 * 180.02562 * 17 16 15 41 41 H 1.08995 * 109.47367 * 300.00403 * 17 16 15 42 42 H 1.09000 * 109.47112 * 289.99515 * 18 16 15 43 43 H 1.08998 * 109.47172 * 50.00230 * 18 16 15 44 44 H 0.97004 * 119.99669 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0902 0.5819 0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0701 4.0170 -0.1052 8 6 3.6030 5.2875 -0.1046 9 6 4.9724 5.4721 0.0005 10 6 5.8178 4.3863 0.1062 11 6 5.2992 3.0982 0.1084 12 7 6.1504 2.0014 0.2154 13 6 7.2614 2.0821 0.9740 14 8 7.4710 3.0744 1.6389 15 6 8.2433 0.9391 0.9962 16 7 9.3601 1.2701 1.8914 17 6 8.9063 1.3681 3.2851 18 6 10.4482 0.2921 1.7595 19 6 11.6637 0.7904 2.4981 20 1 11.6311 1.7389 3.0135 21 6 12.8172 0.0353 2.5158 22 7 12.8568 -1.1195 1.8877 23 14 14.3239 0.6533 3.4307 24 1 14.2828 0.1713 4.8347 25 1 15.5502 0.1416 2.7674 26 1 14.3369 2.1382 3.4172 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.0021 3.8787 -0.1869 33 1 2.9501 6.1440 -0.1856 34 1 5.3806 6.4720 0.0005 35 1 6.8843 4.5385 0.1832 36 1 5.9436 1.1792 -0.2559 37 1 7.7446 0.0386 1.3546 38 1 8.6239 0.7674 -0.0106 39 1 8.4798 0.4145 3.5962 40 1 9.7526 1.6146 3.9262 41 1 8.1497 2.1484 3.3668 42 1 10.1324 -0.6619 2.1816 43 1 10.6923 0.1601 0.7054 44 1 13.6683 -1.6509 1.9005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355444194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:39 Heat of formation + Delta-G solvation = -78.670438 kcal Electronic energy + Delta-G solvation = -26475.517875 eV Core-core repulsion = 22586.616265 eV Total energy + Delta-G solvation = -3888.901610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18956 -40.02493 -38.52326 -36.90371 -36.04736 -34.58363 -32.50759 -32.41670 -31.22938 -30.27493 -28.01629 -26.87534 -25.04500 -24.22882 -23.37869 -22.68674 -21.34680 -20.74467 -19.90412 -18.26091 -17.68254 -17.04173 -16.92352 -16.83360 -16.19095 -15.54912 -15.14799 -14.88241 -14.56140 -14.46219 -14.40839 -14.02537 -13.75848 -13.68088 -13.34268 -13.14018 -12.93597 -12.42848 -12.34981 -12.28043 -11.96035 -11.83886 -11.73223 -11.49417 -11.06317 -10.88470 -10.86304 -10.79166 -10.70209 -10.51888 -10.34184 -9.97744 -9.53171 -9.27624 -9.09661 -8.43162 -8.29352 -7.26224 -6.02060 -4.02696 0.44299 1.12311 2.28405 2.34444 2.78780 3.05235 3.34121 3.39897 3.45706 3.61190 4.32798 4.44576 4.56434 4.60222 4.60574 4.75910 4.89639 4.90418 5.04133 5.06414 5.20309 5.26288 5.34228 5.38103 5.38918 5.57891 5.69211 5.72066 5.81064 5.96210 6.00838 6.08237 6.25101 6.29674 6.36548 6.42010 6.76246 6.91378 7.21913 7.30497 7.41912 7.49790 7.80139 8.03836 8.16907 8.31972 8.52518 9.05098 9.61263 11.09065 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.002655 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.340728 B =10542.781963 C =11735.026233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.518 3.482 5 O -0.512 6.512 6 C -0.174 4.174 7 C -0.042 4.042 8 C -0.159 4.159 9 C -0.058 4.058 10 C -0.138 4.138 11 C 0.232 3.768 12 N -0.674 5.674 13 C 0.516 3.484 14 O -0.496 6.496 15 C 0.039 3.961 16 N -0.523 5.523 17 C 0.032 3.968 18 C 0.193 3.807 19 C -0.505 4.505 20 H 0.065 0.935 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.422 0.578 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.006 0.994 40 H 0.076 0.924 41 H 0.063 0.937 42 H -0.007 1.007 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.300 7.201 -7.076 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.365 3.635 5 O -0.402 6.402 6 C -0.178 4.178 7 C -0.061 4.061 8 C -0.178 4.178 9 C -0.077 4.077 10 C -0.158 4.158 11 C 0.134 3.866 12 N -0.325 5.325 13 C 0.304 3.696 14 O -0.368 6.368 15 C -0.093 4.093 16 N -0.248 5.248 17 C -0.117 4.117 18 C 0.068 3.932 19 C -0.543 4.543 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.024 0.976 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.011 0.989 43 H 0.049 0.951 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.544 7.803 -6.757 27.551 hybrid contribution 0.429 -1.264 0.448 1.408 sum -25.115 6.539 -6.309 26.708 Atomic orbital electron populations 1.21812 0.92475 1.03111 1.03540 1.23074 0.95378 0.79796 1.02934 1.86537 1.23548 1.32610 1.84275 1.21001 0.80654 0.89487 0.72399 1.90695 1.59883 1.42649 1.46992 1.18859 0.91924 0.90758 1.16264 1.21227 0.99613 0.91165 0.94112 1.21075 0.95416 0.96965 1.04356 1.21342 0.93271 0.99047 0.94057 1.21254 1.01962 0.90165 1.02455 1.17746 0.87355 0.88596 0.92942 1.44143 1.23165 1.15784 1.49443 1.21343 0.80616 0.89902 0.77719 1.90660 1.73994 1.32380 1.39796 1.21942 0.92692 0.93323 1.01347 1.61899 1.06398 1.51062 1.05395 1.22377 1.00849 0.98441 0.89988 1.19804 0.87589 0.88167 0.97654 1.21146 0.95837 1.05367 1.31994 0.91661 1.24988 0.98905 0.94935 0.95857 1.69961 1.28326 1.12476 1.43227 0.86466 0.82002 0.79190 0.79596 1.20737 1.21266 1.19704 0.91441 0.90097 0.91412 0.90981 0.90983 0.84403 0.85155 0.84940 0.83527 0.73495 0.92500 0.87917 0.97571 0.90568 0.91855 0.98878 0.95060 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.35 -3.57 9.48 -40.65 -0.39 -3.96 16 4 C 0.52 6.32 7.88 34.45 0.27 6.59 16 5 O -0.51 -7.16 13.68 -19.28 -0.26 -7.42 16 6 C -0.17 -2.07 5.89 -104.83 -0.62 -2.68 16 7 C -0.04 -0.39 9.61 -39.19 -0.38 -0.77 16 8 C -0.16 -1.33 10.02 -39.62 -0.40 -1.72 16 9 C -0.06 -0.57 10.03 -39.54 -0.40 -0.96 16 10 C -0.14 -1.78 8.63 -39.43 -0.34 -2.12 16 11 C 0.23 3.16 6.25 -83.48 -0.52 2.64 16 12 N -0.67 -9.85 4.69 -9.68 -0.05 -9.90 16 13 C 0.52 8.97 7.28 -10.99 -0.08 8.89 16 14 O -0.50 -9.87 12.10 5.56 0.07 -9.80 16 15 C 0.04 0.71 5.45 -4.97 -0.03 0.69 16 16 N -0.52 -11.95 4.49 -245.83 -1.10 -13.06 16 17 C 0.03 0.69 9.03 60.06 0.54 1.23 16 18 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 19 C -0.50 -14.50 8.46 -34.44 -0.29 -14.79 16 20 H 0.07 1.88 7.12 -52.48 -0.37 1.51 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 23 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.14 0.98 7.62 -52.49 -0.40 0.58 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.15 2.12 6.54 -52.49 -0.34 1.78 16 36 H 0.42 5.74 6.31 -40.82 -0.26 5.48 16 37 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.10 1.74 7.93 -51.93 -0.41 1.33 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 41 H 0.06 1.32 5.88 -51.93 -0.31 1.02 16 42 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 43 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -33.51 369.39 -8.41 -41.92 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.21 Total: 1.99 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.74 Total: 3.84 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.41 Total: -49.13 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.58 Total: -21.18 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.51 -8.41 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355444194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.753 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds