Wall clock time and date at job start Tue Mar 31 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.37695 * 127.18351 * 84.27528 * 3 2 1 5 5 C 1.47200 * 126.50607 * 0.02562 * 4 3 2 6 6 S 1.75892 * 125.28108 * 359.85037 * 5 4 3 7 7 C 1.75857 * 91.01672 * 180.18380 * 6 5 4 8 8 C 1.33656 * 109.79162 * 359.83030 * 7 6 5 9 9 C 1.35072 * 125.28741 * 179.71314 * 5 4 3 10 10 C 1.50705 * 122.66800 * 0.02562 * 9 5 4 11 11 N 1.31481 * 106.99045 * 179.73936 * 4 3 2 12 12 N 1.28496 * 109.93333 * 0.26623 * 11 4 3 13 13 C 1.31291 * 110.15669 * 359.97438 * 12 11 4 14 14 N 1.38497 * 126.35429 * 180.02562 * 13 12 11 15 15 C 1.46894 * 111.00183 * 306.85578 * 14 13 12 16 16 C 1.46892 * 111.00134 * 70.81203 * 14 13 12 17 17 H 1.09006 * 109.47044 * 55.00268 * 16 14 13 18 18 C 1.52995 * 109.47507 * 295.00014 * 16 14 13 19 19 C 1.50706 * 109.47225 * 174.99737 * 16 14 13 20 20 H 1.07992 * 119.99621 * 91.56607 * 19 16 14 21 21 C 1.37881 * 119.99930 * 271.56530 * 19 16 14 22 22 N 1.31510 * 119.99822 * 187.81383 * 21 19 16 23 23 Si 1.86794 * 120.00190 * 7.81236 * 21 19 16 24 24 H 1.48499 * 109.47054 * 89.48654 * 23 21 19 25 25 H 1.48493 * 109.47226 * 209.48816 * 23 21 19 26 26 H 1.48498 * 109.47267 * 329.48969 * 23 21 19 27 27 H 1.09003 * 109.47245 * 65.18132 * 1 2 3 28 28 H 1.09003 * 109.47567 * 185.17584 * 1 2 3 29 29 H 1.09006 * 109.47554 * 305.17628 * 1 2 3 30 30 H 1.09006 * 109.47031 * 239.99855 * 2 1 3 31 31 H 1.08997 * 109.47460 * 120.00447 * 2 1 3 32 32 H 1.07997 * 125.10027 * 179.84487 * 7 6 5 33 33 H 1.08007 * 122.44907 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47124 * 269.73156 * 10 9 5 35 35 H 1.09002 * 109.47299 * 149.73473 * 10 9 5 36 36 H 1.09000 * 109.47045 * 29.73201 * 10 9 5 37 37 H 1.09009 * 109.47214 * 58.17486 * 15 14 13 38 38 H 1.08999 * 109.47484 * 178.17569 * 15 14 13 39 39 H 1.09000 * 109.47900 * 298.17857 * 15 14 13 40 40 H 1.09000 * 109.47584 * 186.18385 * 18 16 14 41 41 H 1.09007 * 109.46991 * 306.18964 * 18 16 14 42 42 H 1.09002 * 109.47267 * 66.18239 * 18 16 14 43 43 H 0.96997 * 120.00411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1925 2.2023 1.0916 5 6 1.9223 1.8593 2.4973 6 16 1.3113 0.3111 3.0660 7 6 1.3320 0.8787 4.7303 8 6 1.7781 2.1379 4.7734 9 6 2.1076 2.6837 3.5511 10 6 2.6271 4.0905 3.4019 11 7 2.6519 3.3487 0.6405 12 7 2.7688 3.3012 -0.6382 13 6 2.3931 2.1246 -1.0835 14 7 2.3840 1.7117 -2.4054 15 6 1.6410 2.6586 -3.2476 16 6 3.7514 1.5218 -2.9071 17 1 4.2850 0.8304 -2.2548 18 6 4.4787 2.8676 -2.9278 19 6 3.7003 0.9568 -4.3033 20 1 3.6994 1.6211 -5.1548 21 6 3.6548 -0.4080 -4.4935 22 7 3.7651 -0.9071 -5.7053 23 14 3.4363 -1.5482 -3.0302 24 1 1.9883 -1.7725 -2.7893 25 1 4.0983 -2.8473 -3.3117 26 1 4.0486 -0.9313 -1.8262 27 1 -0.3634 0.4314 -0.9328 28 1 -0.3634 -1.0235 0.0927 29 1 -0.3634 0.5920 0.8400 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.0299 0.2970 5.5886 33 1 1.8739 2.6874 5.6983 34 1 3.7150 4.0854 3.4712 35 1 2.2156 4.7158 4.1942 36 1 2.3267 4.4878 2.4323 37 1 2.0913 3.6481 -3.1661 38 1 1.6769 2.3275 -4.2854 39 1 0.6036 2.7033 -2.9162 40 1 5.4530 2.7469 -3.4013 41 1 3.8884 3.5910 -3.4904 42 1 4.6128 3.2240 -1.9064 43 1 3.7327 -1.8672 -5.8392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358618483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:28 Heat of formation + Delta-G solvation = 129.012849 kcal Electronic energy + Delta-G solvation = -25764.074285 eV Core-core repulsion = 22359.224119 eV Total energy + Delta-G solvation = -3404.850165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52346 -38.41839 -37.31258 -35.54584 -32.76067 -31.70558 -30.54876 -30.03807 -29.03565 -27.20737 -25.64780 -25.21028 -24.04041 -23.21081 -21.75906 -21.07824 -19.49159 -18.23130 -17.80561 -17.12443 -16.42689 -15.84397 -15.65184 -15.27005 -14.85291 -14.44032 -14.02922 -13.74040 -13.57852 -13.36229 -13.21761 -12.88948 -12.76560 -12.46374 -12.18299 -12.11491 -12.01316 -11.95572 -11.57500 -11.40492 -11.24575 -11.02833 -10.94505 -10.86550 -10.70612 -10.30637 -10.01131 -9.85079 -9.78323 -9.57133 -9.20226 -8.78875 -8.54294 -8.05380 -7.77862 -6.27428 -4.30348 0.48675 1.29785 1.72867 2.06355 2.48457 2.66416 3.16691 3.21536 3.24814 3.29872 4.26667 4.30256 4.40324 4.63209 4.77513 4.94030 5.04149 5.19270 5.24847 5.29508 5.46415 5.50661 5.62573 5.63440 5.72242 5.84113 5.88639 6.00375 6.02796 6.07734 6.17686 6.27239 6.29417 6.37863 6.50409 6.55868 6.60956 6.72563 6.86798 7.04860 7.15657 7.43828 7.73768 8.03333 8.39781 8.78338 9.05402 9.35915 10.83278 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.004772 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.560344 B = 5865.770104 C = 6769.855412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 N -0.468 5.468 4 C 0.220 3.780 5 C -0.114 4.114 6 S 0.120 5.880 7 C -0.214 4.214 8 C -0.128 4.128 9 C -0.061 4.061 10 C -0.102 4.102 11 N -0.264 5.264 12 N -0.316 5.316 13 C 0.384 3.616 14 N -0.474 5.474 15 C 0.048 3.952 16 C 0.173 3.827 17 H 0.050 0.950 18 C -0.164 4.164 19 C -0.497 4.497 20 H 0.080 0.920 21 C 0.086 3.914 22 N -0.884 5.884 23 Si 0.882 3.118 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.268 1.268 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 1.539 19.129 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.162 5.162 4 C -0.044 4.044 5 C -0.233 4.233 6 S 0.384 5.616 7 C -0.351 4.351 8 C -0.158 4.158 9 C -0.077 4.077 10 C -0.161 4.161 11 N -0.107 5.107 12 N -0.161 5.161 13 C 0.030 3.970 14 N -0.202 5.202 15 C -0.099 4.099 16 C 0.071 3.929 17 H 0.068 0.932 18 C -0.223 4.223 19 C -0.536 4.536 20 H 0.098 0.902 21 C -0.119 4.119 22 N -0.521 5.521 23 Si 0.711 3.289 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.193 1.193 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.105 0.899 18.223 19.579 hybrid contribution 0.099 -0.345 1.449 1.493 sum -7.006 0.554 19.672 20.889 Atomic orbital electron populations 1.22162 0.93371 1.03405 1.03518 1.22012 0.96369 0.79363 1.04648 1.46584 1.49550 1.13402 1.06632 1.21230 1.07001 0.89458 0.86714 1.21179 1.12222 0.98547 0.91385 1.84267 1.64486 1.13076 0.99731 1.25847 1.08889 1.00012 1.00322 1.19950 1.02417 0.95102 0.98369 1.19102 0.99929 0.98101 0.90539 1.20716 1.00923 0.90193 1.04250 1.74316 1.15865 1.16756 1.03805 1.74706 1.21106 1.17641 1.02604 1.23260 0.96860 0.86890 0.89990 1.60361 1.21109 1.45318 0.93440 1.22152 0.95288 0.93577 0.98865 1.20141 0.81787 0.94327 0.96650 0.93181 1.22334 1.00802 0.98672 1.00505 1.20837 1.50722 0.92196 0.89856 0.90187 1.25056 0.93081 0.98257 0.95552 1.69906 1.47872 1.13119 1.21155 0.86823 0.78867 0.79581 0.83644 1.19498 1.21840 1.19319 0.90932 0.90152 0.91856 0.87430 0.89797 0.81553 0.83767 0.90969 0.91993 0.88679 0.94286 0.88650 0.93677 0.92770 0.93000 0.93538 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.90 37.15 0.37 -1.80 16 2 C 0.10 1.58 6.13 -4.05 -0.02 1.55 16 3 N -0.47 -8.65 2.84 -114.77 -0.33 -8.98 16 4 C 0.22 3.92 7.78 -153.75 -1.20 2.72 16 5 C -0.11 -1.66 6.41 -37.07 -0.24 -1.90 16 6 S 0.12 1.36 19.19 -107.50 -2.06 -0.70 16 7 C -0.21 -2.00 11.22 29.13 0.33 -1.67 16 8 C -0.13 -1.28 9.95 -41.32 -0.41 -1.69 16 9 C -0.06 -0.78 5.84 -105.88 -0.62 -1.40 16 10 C -0.10 -1.22 9.60 36.01 0.35 -0.88 16 11 N -0.26 -5.16 9.69 32.50 0.31 -4.85 16 12 N -0.32 -6.65 9.89 30.35 0.30 -6.35 16 13 C 0.38 7.94 6.21 -318.64 -1.98 5.97 16 14 N -0.47 -10.18 4.43 -176.04 -0.78 -10.96 16 15 C 0.05 0.95 8.71 60.06 0.52 1.47 16 16 C 0.17 4.05 1.70 -68.87 -0.12 3.93 16 17 H 0.05 1.25 5.53 -51.93 -0.29 0.96 16 18 C -0.16 -3.56 8.38 37.16 0.31 -3.24 16 19 C -0.50 -13.05 7.61 -34.44 -0.26 -13.32 16 20 H 0.08 2.26 8.04 -52.49 -0.42 1.84 16 21 C 0.09 2.33 5.47 -17.82 -0.10 2.23 16 22 N -0.88 -25.39 13.96 55.43 0.77 -24.61 16 23 Si 0.88 20.67 25.44 -169.99 -4.32 16.35 16 24 H -0.27 -6.02 6.99 56.52 0.40 -5.63 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.16 5.97 56.52 0.34 -5.83 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 30 H 0.11 1.94 5.71 -51.93 -0.30 1.64 16 31 H 0.08 1.17 5.89 -51.89 -0.31 0.86 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.09 1.37 5.96 -51.93 -0.31 1.06 16 37 H 0.04 0.76 6.28 -51.92 -0.33 0.43 16 38 H 0.09 1.96 6.92 -51.93 -0.36 1.60 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.08 6.19 -51.93 -0.32 0.76 16 42 H 0.05 1.00 6.33 -51.93 -0.33 0.68 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -29.84 347.91 -9.86 -39.69 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.93 Total: 3.19 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.07 Total: -8.02 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.32 Total: 16.35 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.06 Total: -0.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.84 -9.86 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358618483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.706 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds