Wall clock time and date at job start Tue Mar 31 2020 12:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.37695 * 127.18351 * 84.27528 * 3 2 1 5 5 C 1.47200 * 126.50607 * 0.02562 * 4 3 2 6 6 S 1.75892 * 125.28108 * 359.85037 * 5 4 3 7 7 C 1.75857 * 91.01672 * 180.18380 * 6 5 4 8 8 C 1.33656 * 109.79162 * 359.83030 * 7 6 5 9 9 C 1.35072 * 125.28741 * 179.71314 * 5 4 3 10 10 C 1.50705 * 122.66800 * 0.02562 * 9 5 4 11 11 N 1.31481 * 106.99045 * 179.73936 * 4 3 2 12 12 N 1.28496 * 109.93333 * 0.26623 * 11 4 3 13 13 C 1.31291 * 110.15669 * 359.97438 * 12 11 4 14 14 N 1.38497 * 126.35429 * 180.02562 * 13 12 11 15 15 C 1.46894 * 111.00183 * 306.85578 * 14 13 12 16 16 C 1.46892 * 111.00134 * 70.81203 * 14 13 12 17 17 H 1.09006 * 109.47044 * 55.00268 * 16 14 13 18 18 C 1.52995 * 109.47507 * 295.00014 * 16 14 13 19 19 C 1.50706 * 109.47225 * 174.99737 * 16 14 13 20 20 H 1.07992 * 119.99621 * 91.56607 * 19 16 14 21 21 C 1.37881 * 119.99930 * 271.56530 * 19 16 14 22 22 N 1.31510 * 119.99822 * 187.81383 * 21 19 16 23 23 Si 1.86794 * 120.00190 * 7.81236 * 21 19 16 24 24 H 1.48499 * 109.47054 * 89.48654 * 23 21 19 25 25 H 1.48493 * 109.47226 * 209.48816 * 23 21 19 26 26 H 1.48498 * 109.47267 * 329.48969 * 23 21 19 27 27 H 1.09003 * 109.47245 * 65.18132 * 1 2 3 28 28 H 1.09003 * 109.47567 * 185.17584 * 1 2 3 29 29 H 1.09006 * 109.47554 * 305.17628 * 1 2 3 30 30 H 1.09006 * 109.47031 * 239.99855 * 2 1 3 31 31 H 1.08997 * 109.47460 * 120.00447 * 2 1 3 32 32 H 1.07997 * 125.10027 * 179.84487 * 7 6 5 33 33 H 1.08007 * 122.44907 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47124 * 269.73156 * 10 9 5 35 35 H 1.09002 * 109.47299 * 149.73473 * 10 9 5 36 36 H 1.09000 * 109.47045 * 29.73201 * 10 9 5 37 37 H 1.09009 * 109.47214 * 58.17486 * 15 14 13 38 38 H 1.08999 * 109.47484 * 178.17569 * 15 14 13 39 39 H 1.09000 * 109.47900 * 298.17857 * 15 14 13 40 40 H 1.09000 * 109.47584 * 186.18385 * 18 16 14 41 41 H 1.09007 * 109.46991 * 306.18964 * 18 16 14 42 42 H 1.09002 * 109.47267 * 66.18239 * 18 16 14 43 43 H 0.96997 * 120.00411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1925 2.2023 1.0916 5 6 1.9223 1.8593 2.4973 6 16 1.3113 0.3111 3.0660 7 6 1.3320 0.8787 4.7303 8 6 1.7781 2.1379 4.7734 9 6 2.1076 2.6837 3.5511 10 6 2.6271 4.0905 3.4019 11 7 2.6519 3.3487 0.6405 12 7 2.7688 3.3012 -0.6382 13 6 2.3931 2.1246 -1.0835 14 7 2.3840 1.7117 -2.4054 15 6 1.6410 2.6586 -3.2476 16 6 3.7514 1.5218 -2.9071 17 1 4.2850 0.8304 -2.2548 18 6 4.4787 2.8676 -2.9278 19 6 3.7003 0.9568 -4.3033 20 1 3.6994 1.6211 -5.1548 21 6 3.6548 -0.4080 -4.4935 22 7 3.7651 -0.9071 -5.7053 23 14 3.4363 -1.5482 -3.0302 24 1 1.9883 -1.7725 -2.7893 25 1 4.0983 -2.8473 -3.3117 26 1 4.0486 -0.9313 -1.8262 27 1 -0.3634 0.4314 -0.9328 28 1 -0.3634 -1.0235 0.0927 29 1 -0.3634 0.5920 0.8400 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.0299 0.2970 5.5886 33 1 1.8739 2.6874 5.6983 34 1 3.7150 4.0854 3.4712 35 1 2.2156 4.7158 4.1942 36 1 2.3267 4.4878 2.4323 37 1 2.0913 3.6481 -3.1661 38 1 1.6769 2.3275 -4.2854 39 1 0.6036 2.7033 -2.9162 40 1 5.4530 2.7469 -3.4013 41 1 3.8884 3.5910 -3.4904 42 1 4.6128 3.2240 -1.9064 43 1 3.7327 -1.8672 -5.8392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358618483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:27 Heat of formation + Delta-G solvation = 113.492355 kcal Electronic energy + Delta-G solvation = -25764.747304 eV Core-core repulsion = 22359.224119 eV Total energy + Delta-G solvation = -3405.523184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.95718 -39.44037 -38.90660 -36.85458 -34.73682 -32.88430 -31.87816 -31.52783 -30.32747 -28.41385 -27.51411 -26.90404 -25.27012 -24.13050 -23.11300 -22.52135 -21.12711 -19.35640 -19.13340 -18.77252 -17.78177 -17.36038 -17.08623 -16.42549 -16.27126 -15.80227 -15.54076 -15.16033 -14.86257 -14.60844 -14.57617 -14.28452 -14.03714 -13.81329 -13.58000 -13.33335 -13.11899 -13.03642 -12.94629 -12.92101 -12.83327 -12.53775 -12.36209 -12.30502 -11.93362 -11.82508 -11.77160 -11.44158 -11.31044 -11.14186 -10.91234 -10.74961 -9.58518 -9.38644 -9.14487 -8.35878 -6.43338 -0.49034 0.39720 0.81573 0.90784 1.13829 1.28534 1.31694 1.39881 1.56274 1.98589 2.30692 2.71852 3.16155 3.27489 3.40570 3.82236 3.96275 4.03595 4.05454 4.10602 4.28674 4.39434 4.45121 4.50945 4.57070 4.60940 4.67559 4.73339 4.74448 4.80785 4.88738 4.94857 4.99943 5.02575 5.06239 5.15513 5.18563 5.31815 5.41941 5.49509 5.53389 5.70592 5.93358 6.18470 6.50250 6.67897 7.26336 7.60033 8.78213 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.004772 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.560344 B = 5865.770104 C = 6769.855412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.470 5.470 4 C 0.242 3.758 5 C -0.171 4.171 6 S 0.130 5.870 7 C -0.183 4.183 8 C -0.140 4.140 9 C -0.047 4.047 10 C -0.103 4.103 11 N -0.293 5.293 12 N -0.334 5.334 13 C 0.361 3.639 14 N -0.475 5.475 15 C 0.055 3.945 16 C 0.184 3.816 17 H 0.037 0.963 18 C -0.153 4.153 19 C -0.498 4.498 20 H 0.048 0.952 21 C 0.038 3.962 22 N -0.929 5.929 23 Si 0.936 3.064 24 H -0.251 1.251 25 H -0.290 1.290 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.205 0.795 33 H 0.177 0.823 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 0.565 23.584 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.031 4.031 3 N -0.164 5.164 4 C -0.023 4.023 5 C -0.290 4.290 6 S 0.394 5.606 7 C -0.319 4.319 8 C -0.169 4.169 9 C -0.064 4.064 10 C -0.162 4.162 11 N -0.135 5.135 12 N -0.179 5.179 13 C 0.005 3.995 14 N -0.202 5.202 15 C -0.092 4.092 16 C 0.080 3.920 17 H 0.055 0.945 18 C -0.212 4.212 19 C -0.536 4.536 20 H 0.066 0.934 21 C -0.163 4.163 22 N -0.568 5.568 23 Si 0.762 3.238 24 H -0.175 1.175 25 H -0.217 1.217 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.222 0.778 33 H 0.194 0.806 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.549 -0.062 22.679 24.237 hybrid contribution 0.510 0.045 0.301 0.594 sum -8.039 -0.017 22.980 24.345 Atomic orbital electron populations 1.22147 0.91195 1.05351 1.02984 1.22250 0.98203 0.78031 1.04572 1.46728 1.49359 1.14186 1.06091 1.21818 1.04081 0.88458 0.87934 1.21328 1.16383 1.01250 0.90048 1.84155 1.63928 1.11249 1.01235 1.26373 1.05849 0.99690 1.00035 1.20203 1.02733 0.95692 0.98318 1.19464 0.97796 0.97832 0.91309 1.20722 1.00988 0.90670 1.03834 1.74293 1.18063 1.18111 1.03051 1.74583 1.21344 1.18208 1.03724 1.22992 0.99085 0.87605 0.89813 1.59948 1.19716 1.46130 0.94413 1.22096 0.96175 0.93068 0.97818 1.19846 0.83011 0.94501 0.94635 0.94530 1.22208 1.00557 0.97988 1.00473 1.20857 1.50417 0.91988 0.90374 0.93386 1.25741 0.92892 0.99730 0.97923 1.70020 1.49957 1.13572 1.23239 0.85967 0.79868 0.77467 0.80460 1.17519 1.21705 1.18927 0.92452 0.87123 0.91147 0.89561 0.87769 0.77767 0.80582 0.91056 0.89108 0.91355 0.94396 0.90132 0.91815 0.92909 0.92747 0.93493 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.90 71.98 0.71 -3.07 16 2 C 0.09 2.76 6.13 86.38 0.53 3.29 16 3 N -0.47 -17.06 2.84 -517.02 -1.47 -18.53 16 4 C 0.24 8.44 7.78 135.92 1.06 9.50 16 5 C -0.17 -4.62 6.41 23.90 0.15 -4.46 16 6 S 0.13 2.47 19.19 -56.49 -1.08 1.39 16 7 C -0.18 -2.42 11.22 66.78 0.75 -1.67 16 8 C -0.14 -2.13 9.95 21.14 0.21 -1.92 16 9 C -0.05 -1.06 5.84 -20.68 -0.12 -1.18 16 10 C -0.10 -2.29 9.60 71.24 0.68 -1.61 16 11 N -0.29 -11.53 9.69 -51.10 -0.50 -12.02 16 12 N -0.33 -14.28 9.89 -57.90 -0.57 -14.86 16 13 C 0.36 14.99 6.21 260.03 1.61 16.60 16 14 N -0.47 -20.66 4.43 -710.85 -3.15 -23.80 16 15 C 0.06 2.23 8.71 127.69 1.11 3.34 16 16 C 0.18 8.79 1.70 44.17 0.08 8.87 16 17 H 0.04 1.85 5.53 -2.38 -0.01 1.84 16 18 C -0.15 -6.82 8.38 71.98 0.60 -6.22 16 19 C -0.50 -27.09 7.61 25.60 0.19 -26.89 16 20 H 0.05 2.86 8.04 -2.91 -0.02 2.84 16 21 C 0.04 2.13 5.47 84.66 0.46 2.59 16 22 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 23 Si 0.94 42.98 25.44 68.60 1.75 44.73 16 24 H -0.25 -10.65 6.99 99.48 0.70 -9.95 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.26 -11.85 5.97 99.48 0.59 -11.26 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.57 7.37 -2.38 -0.02 1.55 16 30 H 0.09 2.98 5.71 -2.38 -0.01 2.97 16 31 H 0.10 2.65 5.89 -2.41 -0.01 2.64 16 32 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.09 1.44 8.13 -2.39 -0.02 1.42 16 36 H 0.07 1.93 5.96 -2.39 -0.01 1.92 16 37 H 0.04 1.51 6.28 -2.38 -0.01 1.49 16 38 H 0.08 3.45 6.92 -2.39 -0.02 3.43 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 2.35 6.19 -2.38 -0.01 2.34 16 42 H 0.05 2.07 6.33 -2.39 -0.02 2.06 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.65 347.91 4.22 -63.43 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.90 Total: 17.23 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 8.04 Total: -2.84 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.38 Total: -123.94 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.75 Total: 44.73 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.08 Total: 1.39 kcal Total: -67.65 4.22 -63.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358618483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.922 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds