Wall clock time and date at job start Tue Mar 31 2020 12:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47428 * 2 1 4 4 C 1.35898 * 117.00221 * 179.97438 * 3 2 1 5 5 C 1.38817 * 120.01768 * 0.02943 * 4 3 2 6 6 C 1.38175 * 120.09209 * 179.97438 * 5 4 3 7 7 C 1.38157 * 120.12725 * 359.70094 * 6 5 4 8 8 C 1.38931 * 120.03458 * 0.55652 * 7 6 5 9 9 N 1.39665 * 120.04485 * 179.74303 * 8 7 6 10 10 C 1.46848 * 111.00221 * 247.07319 * 9 8 7 11 11 C 1.53035 * 109.52169 * 185.84125 * 10 9 8 12 12 C 1.53118 * 109.27902 * 300.81944 * 11 10 9 13 13 C 1.50699 * 109.52318 * 177.56380 * 12 11 10 14 14 H 1.08006 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00214 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99899 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47280 * 90.00485 * 17 15 13 19 19 H 1.48505 * 109.47279 * 210.00166 * 17 15 13 20 20 H 1.48497 * 109.47279 * 330.00037 * 17 15 13 21 21 C 1.53121 * 109.15965 * 57.65950 * 12 11 10 22 22 C 1.46848 * 111.00177 * 11.28911 * 9 8 7 23 23 C 1.38569 * 120.01924 * 179.97438 * 4 3 2 24 24 N 1.48023 * 120.05984 * 0.05386 * 23 4 3 25 25 O 1.21806 * 120.00068 * 263.00593 * 24 23 4 26 26 O 1.21801 * 120.00470 * 83.01349 * 24 23 4 27 27 H 1.08995 * 109.46868 * 59.99515 * 1 2 3 28 28 H 1.08997 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46750 * 299.99736 * 1 2 3 30 30 H 1.09007 * 109.47263 * 240.00218 * 2 1 3 31 31 H 1.09000 * 109.47334 * 120.00444 * 2 1 3 32 32 H 1.08004 * 119.95176 * 359.97291 * 5 4 3 33 33 H 1.07997 * 119.93317 * 179.97438 * 6 5 4 34 34 H 1.07994 * 119.98227 * 180.29080 * 7 6 5 35 35 H 1.09002 * 109.45707 * 65.82648 * 10 9 8 36 36 H 1.09000 * 109.46050 * 305.85868 * 10 9 8 37 37 H 1.09005 * 109.49703 * 180.88400 * 11 10 9 38 38 H 1.08999 * 109.53838 * 60.78834 * 11 10 9 39 39 H 1.09001 * 109.52333 * 297.75029 * 12 11 10 40 40 H 0.97005 * 120.00148 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.50230 * 62.28717 * 21 12 11 42 42 H 1.08998 * 109.50015 * 182.40587 * 21 12 11 43 43 H 1.09009 * 109.45860 * 294.17461 * 22 9 8 44 44 H 1.08998 * 109.46404 * 54.13665 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1996 0.4247 0.0004 6 6 5.5697 0.6039 0.0005 7 6 6.1023 1.8787 -0.0057 8 6 5.2606 2.9840 -0.0002 9 7 5.7987 4.2728 -0.0009 10 6 5.5147 4.9625 1.2640 11 6 5.9896 6.4145 1.1726 12 6 7.4931 6.4374 0.8836 13 6 7.9553 7.8638 0.7332 14 1 7.2481 8.6740 0.8331 15 6 9.2807 8.1346 0.4670 16 7 10.1415 7.1480 0.3439 17 14 9.8535 9.9027 0.2798 18 1 10.2690 10.4312 1.6039 19 1 11.0048 9.9536 -0.6568 20 1 8.7422 10.7289 -0.2564 21 6 7.7672 5.6712 -0.4135 22 6 7.2408 4.2408 -0.2762 23 6 3.8838 2.8056 0.0000 24 7 2.9837 3.9808 0.0001 25 8 2.7149 4.5421 -1.0469 26 8 2.5119 4.3865 1.0471 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.7862 -0.5731 0.0004 33 1 6.2254 -0.2542 0.0008 34 1 7.1734 2.0161 -0.0104 35 1 6.0381 4.4597 2.0772 36 1 4.4419 4.9426 1.4555 37 1 5.7928 6.9217 2.1172 38 1 5.4566 6.9224 0.3688 39 1 8.0294 5.9646 1.7064 40 1 11.0740 7.3384 0.1562 41 1 7.2623 6.1668 -1.2426 42 1 8.8405 5.6474 -0.6021 43 1 7.7561 3.7413 0.5444 44 1 7.4217 3.6966 -1.2031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545871297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:01 Heat of formation + Delta-G solvation = -26.639587 kcal Electronic energy + Delta-G solvation = -27853.332362 eV Core-core repulsion = 23966.686979 eV Total energy + Delta-G solvation = -3886.645383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.37324 -41.60334 -40.61568 -38.39383 -37.56625 -35.84278 -33.62836 -33.48311 -32.20885 -31.44979 -30.22409 -27.93785 -27.10614 -25.32199 -24.54789 -24.04769 -22.96887 -22.27158 -20.63297 -20.46908 -19.85360 -19.09024 -18.66342 -18.43330 -17.40801 -17.34216 -16.94487 -16.51576 -16.34168 -15.86640 -15.55089 -15.00378 -14.76906 -14.55808 -14.43551 -14.17028 -13.66164 -13.62101 -13.44814 -13.19897 -12.95205 -12.93856 -12.81366 -12.73815 -12.50793 -12.47989 -12.25068 -12.15060 -12.05862 -12.03642 -11.82048 -11.51475 -11.03432 -10.95861 -10.70852 -10.44317 -10.00592 -9.23839 -8.12961 -6.24785 -0.60847 -0.33253 -0.04919 0.44065 1.39612 1.41150 1.51214 1.67539 2.17218 2.41697 2.55841 3.14808 3.55559 3.57352 3.67039 3.72351 3.95178 3.97360 3.99564 4.03713 4.08505 4.20118 4.28102 4.28744 4.39644 4.64690 4.67149 4.69153 4.73499 4.81492 4.84818 4.91605 5.01393 5.08543 5.11836 5.15826 5.19119 5.27108 5.42030 5.53875 5.66200 5.85485 5.96654 6.00166 6.05600 6.34450 6.45022 6.82881 7.42656 8.92257 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.003251 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.689307 B = 8609.932574 C = 9352.017341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 O -0.340 6.340 4 C 0.188 3.812 5 C -0.214 4.214 6 C 0.002 3.998 7 C -0.202 4.202 8 C 0.179 3.821 9 N -0.510 5.510 10 C 0.059 3.941 11 C -0.099 4.099 12 C 0.048 3.952 13 C -0.536 4.536 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.275 1.275 21 C -0.098 4.098 22 C 0.067 3.933 23 C -0.116 4.116 24 N 0.047 4.953 25 O -0.164 6.164 26 O -0.167 6.167 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.189 0.811 33 H 0.191 0.809 34 H 0.161 0.839 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.003 0.997 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 -22.928 -0.522 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 O -0.254 6.254 4 C 0.140 3.860 5 C -0.233 4.233 6 C -0.017 4.017 7 C -0.224 4.224 8 C 0.078 3.922 9 N -0.225 5.225 10 C -0.066 4.066 11 C -0.137 4.137 12 C 0.029 3.971 13 C -0.574 4.574 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.777 3.223 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.137 4.137 22 C -0.059 4.059 23 C -0.200 4.200 24 N 0.573 4.427 25 O -0.387 6.387 26 O -0.387 6.387 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.206 0.794 33 H 0.208 0.792 34 H 0.179 0.821 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.512 -23.063 -0.899 25.792 hybrid contribution 0.437 1.501 0.355 1.603 sum -11.075 -21.562 -0.544 24.246 Atomic orbital electron populations 1.21864 0.91647 1.04736 1.02834 1.23387 0.96921 0.78724 1.04034 1.86144 1.17532 1.34309 1.87419 1.18435 0.84522 0.90409 0.92635 1.21614 0.93744 0.97892 1.10058 1.21641 0.94705 0.97393 0.87915 1.21700 1.01154 0.91273 1.08239 1.18682 0.88967 0.91386 0.93178 1.58996 1.17406 1.12946 1.33178 1.22397 1.01057 0.95765 0.87349 1.21570 0.98239 0.93279 1.00563 1.18647 0.90108 0.94833 0.93466 1.21482 0.94069 0.93069 1.48808 0.93575 1.25645 0.96818 1.00829 0.94781 1.69947 1.03370 1.32262 1.49595 0.85655 0.77799 0.80724 0.78074 1.20057 1.20511 1.19944 1.21504 1.01368 0.92238 0.98542 1.22384 0.82920 0.99390 1.01198 1.20103 0.88749 0.83251 1.27912 1.43455 0.98797 1.01048 0.99406 1.94510 1.63788 1.58656 1.21723 1.94437 1.54092 1.68579 1.21548 0.92503 0.86829 0.92397 0.89126 0.89048 0.79438 0.79161 0.82122 0.93044 0.90904 0.91913 0.93873 0.97907 0.92808 0.95476 0.90179 0.92685 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.34 -8.15 9.89 -92.41 -0.91 -9.06 16 4 C 0.19 4.64 6.68 22.49 0.15 4.79 16 5 C -0.21 -3.15 9.04 22.39 0.20 -2.95 16 6 C 0.00 0.02 10.03 22.24 0.22 0.25 16 7 C -0.20 -4.49 8.82 22.42 0.20 -4.29 16 8 C 0.18 5.62 5.39 38.20 0.21 5.83 16 9 N -0.51 -19.21 4.48 -695.45 -3.12 -22.33 16 10 C 0.06 2.33 5.21 86.32 0.45 2.78 16 11 C -0.10 -4.49 5.32 30.65 0.16 -4.33 16 12 C 0.05 2.44 2.16 -11.46 -0.02 2.42 16 13 C -0.54 -30.27 8.56 25.60 0.22 -30.05 16 14 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 15 C 0.02 1.02 5.31 84.65 0.45 1.46 16 16 N -0.91 -51.47 11.37 21.45 0.24 -51.23 16 17 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C -0.10 -4.63 5.12 30.65 0.16 -4.48 16 22 C 0.07 2.45 4.15 86.32 0.36 2.81 16 23 C -0.12 -3.80 5.90 36.60 0.22 -3.58 16 24 N 0.05 1.82 3.07 -45.93 -0.14 1.68 16 25 O -0.16 -6.95 19.26 18.88 0.36 -6.59 16 26 O -0.17 -6.71 17.13 18.88 0.32 -6.39 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.68 7.66 -2.38 -0.02 0.67 16 31 H 0.09 0.68 7.66 -2.39 -0.02 0.66 16 32 H 0.19 1.10 6.29 -2.91 -0.02 1.09 16 33 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 3.23 5.91 -2.91 -0.02 3.21 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.94 4.66 -2.39 -0.01 2.93 16 37 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 4.12 6.17 -2.39 -0.01 4.11 16 43 H 0.06 1.90 7.23 -2.38 -0.02 1.88 16 44 H 0.09 2.93 7.56 -2.39 -0.02 2.91 16 Total: -1.00 -72.29 355.87 3.90 -68.39 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.02 Total: 8.69 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.10 Total: -29.34 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -3.02 Total: -71.87 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.23 Total: -22.04 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.29 3.90 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545871297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.752 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds