Wall clock time and date at job start Tue Mar 31 2020 12:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.46943 * 2 1 4 4 C 1.35431 * 116.99317 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80322 * 0.02562 * 4 3 2 6 6 C 1.31887 * 121.79989 * 179.97438 * 5 4 3 7 7 C 1.50692 * 119.40443 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.18289 * 359.97438 * 6 5 4 9 9 C 1.38337 * 119.46479 * 359.76493 * 8 6 5 10 10 C 1.39996 * 118.34547 * 0.47492 * 9 8 6 11 11 C 1.47517 * 120.59677 * 179.80116 * 10 9 8 12 12 O 1.21584 * 120.00257 * 215.67178 * 11 10 9 13 13 N 1.34783 * 119.99991 * 35.67809 * 11 10 9 14 14 C 1.47422 * 125.64563 * 355.77344 * 13 11 10 15 15 C 1.54911 * 104.83030 * 155.91062 * 14 13 11 16 16 C 1.55157 * 101.61796 * 36.99065 * 15 14 13 17 17 O 1.42900 * 110.71995 * 82.88085 * 16 15 14 18 18 C 1.50697 * 110.72092 * 206.15435 * 16 15 14 19 19 H 1.08001 * 119.99855 * 0.02562 * 18 16 15 20 20 C 1.37883 * 120.00210 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99669 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00037 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47305 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46969 * 120.00415 * 22 20 18 25 25 H 1.48496 * 109.47166 * 240.00284 * 22 20 18 26 26 C 1.47024 * 125.64708 * 175.81952 * 13 11 10 27 27 H 1.09002 * 109.47284 * 300.00294 * 1 2 3 28 28 H 1.09007 * 109.46841 * 59.99406 * 1 2 3 29 29 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47064 * 240.00141 * 2 1 3 31 31 H 1.09000 * 109.46661 * 120.00233 * 2 1 3 32 32 H 1.08996 * 109.47053 * 90.00667 * 7 6 5 33 33 H 1.09006 * 109.47215 * 210.00027 * 7 6 5 34 34 H 1.09001 * 109.47793 * 330.00375 * 7 6 5 35 35 H 1.08000 * 120.26797 * 180.02562 * 8 6 5 36 36 H 1.08002 * 120.82927 * 180.25058 * 9 8 6 37 37 H 1.09000 * 110.37000 * 37.07128 * 14 13 11 38 38 H 1.08995 * 110.36912 * 274.74674 * 14 13 11 39 39 H 1.09005 * 111.00659 * 155.08547 * 15 14 13 40 40 H 1.09000 * 111.00596 * 278.89799 * 15 14 13 41 41 H 0.96703 * 113.99617 * 180.02562 * 17 16 15 42 42 H 0.96998 * 120.00211 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.87993 * 300.43432 * 26 13 11 44 44 H 1.08998 * 109.88058 * 61.45341 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6353 -0.0001 8 6 6.0625 1.8472 0.0000 9 6 5.2715 2.9820 -0.0054 10 6 3.8806 2.8228 -0.0001 11 6 2.9902 3.9989 -0.0011 12 8 1.9434 3.9695 0.6166 13 7 3.3370 5.1061 -0.6870 14 6 4.6096 5.3100 -1.4027 15 6 4.2914 6.3748 -2.4819 16 6 3.3017 7.3001 -1.7256 17 8 4.0084 8.2429 -0.9170 18 6 2.3862 8.0054 -2.6927 19 1 2.4808 7.8271 -3.7537 20 6 1.4271 8.8776 -2.2231 21 7 1.3117 9.0943 -0.9311 22 14 0.2928 9.7525 -3.4220 23 1 0.6254 9.3398 -4.8091 24 1 -1.1164 9.3917 -3.1231 25 1 0.4672 11.2209 -3.2867 26 6 2.5092 6.3109 -0.8444 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 6.5345 -0.9326 -1.0279 33 1 7.2642 -0.4239 0.5139 34 1 5.8049 -1.4432 0.5133 35 1 7.1390 1.9340 -0.0004 36 1 5.7158 3.9664 -0.0100 37 1 4.9347 4.3809 -1.8708 38 1 5.3742 5.6793 -0.7194 39 1 5.1907 6.9184 -2.7716 40 1 3.8151 5.9204 -3.3507 41 1 3.4351 8.8448 -0.4229 42 1 0.6373 9.7082 -0.6006 43 1 1.5686 6.0534 -1.3311 44 1 2.3122 6.7554 0.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:22 Heat of formation + Delta-G solvation = -83.969428 kcal Electronic energy + Delta-G solvation = -27623.275556 eV Core-core repulsion = 23734.144164 eV Total energy + Delta-G solvation = -3889.131392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92422 -39.10847 -38.15809 -37.07757 -34.40573 -33.13942 -32.31643 -32.17228 -30.97586 -30.05446 -28.25510 -27.64196 -25.22506 -23.86746 -23.38470 -22.59975 -21.77370 -19.82604 -19.29784 -18.20356 -17.26521 -16.86971 -16.59142 -16.32625 -15.47887 -15.09236 -14.82685 -14.57968 -14.40387 -14.18440 -14.06140 -13.46103 -13.26284 -13.05185 -12.94711 -12.83142 -12.65548 -12.57830 -12.35740 -12.05306 -11.89419 -11.61391 -11.49780 -11.45665 -11.07842 -10.82193 -10.71209 -10.66667 -10.48589 -10.20541 -9.95715 -9.85355 -9.34653 -9.26816 -8.67789 -8.45287 -8.31637 -7.85919 -6.30031 -4.38514 0.76884 1.21499 2.97057 3.17136 3.19820 3.28838 3.32157 3.53692 3.83682 4.03669 4.26563 4.57598 4.82359 4.90010 4.97850 4.98183 5.00255 5.11095 5.24511 5.29832 5.32227 5.34402 5.39637 5.61971 5.68550 5.71023 5.80445 5.81480 5.84109 5.96559 5.97983 6.06401 6.17899 6.34348 6.47798 6.74170 6.84055 6.98190 7.25726 7.27743 7.37221 7.72980 7.73128 7.98573 8.20590 8.64128 8.76115 9.30322 9.42226 10.77839 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003680 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.262877 B = 7606.624414 C = 8746.981383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.278 6.278 4 C 0.373 3.627 5 N -0.547 5.547 6 C 0.180 3.820 7 C -0.105 4.105 8 C -0.220 4.220 9 C -0.013 4.013 10 C -0.198 4.198 11 C 0.571 3.429 12 O -0.530 6.530 13 N -0.606 5.606 14 C 0.097 3.903 15 C -0.118 4.118 16 C 0.249 3.751 17 O -0.586 6.586 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.104 3.896 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.066 0.934 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -17.106 1.029 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.183 6.183 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.043 3.957 7 C -0.162 4.162 8 C -0.240 4.240 9 C -0.038 4.038 10 C -0.204 4.204 11 C 0.358 3.642 12 O -0.407 6.407 13 N -0.339 5.339 14 C -0.026 4.026 15 C -0.156 4.156 16 C 0.208 3.792 17 O -0.396 6.396 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.535 5.535 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.018 4.018 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.239 0.761 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.902 -18.011 1.289 19.710 hybrid contribution -0.755 1.390 -0.306 1.611 sum 7.148 -16.621 0.983 18.119 Atomic orbital electron populations 1.21804 0.92899 1.02448 1.03892 1.22640 0.95123 0.81218 1.02100 1.86461 1.15851 1.30004 1.85982 1.19657 0.84342 0.88269 0.88434 1.67227 1.05980 1.32480 1.21530 1.21093 0.88789 0.95248 0.90606 1.20773 0.97927 0.94178 1.03344 1.21704 1.01401 0.92194 1.08718 1.21950 0.91219 1.00401 0.90234 1.20057 0.94510 0.92622 1.13219 1.17391 0.85543 0.81408 0.79861 1.90782 1.24753 1.82097 1.43118 1.48655 1.19054 1.15882 1.50314 1.22529 0.86630 0.98759 0.94681 1.22778 1.00559 0.95650 0.96647 1.19483 0.87404 0.85311 0.86965 1.86064 1.39391 1.50029 1.64153 1.21562 1.16452 1.25792 0.93747 0.91423 1.25080 0.96753 0.95931 0.95517 1.69580 1.35240 1.36334 1.12300 0.86336 0.80218 0.79242 0.81050 1.19579 1.20742 1.20714 1.23063 0.94437 0.83032 1.01235 0.91351 0.91510 0.90507 0.91787 0.91723 0.90002 0.90258 0.90404 0.84078 0.83046 0.91855 0.91529 0.90401 0.90507 0.76139 0.91930 0.91567 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 37.16 0.38 -1.32 16 2 C 0.06 0.84 6.03 37.16 0.22 1.07 16 3 O -0.28 -4.92 8.80 -35.24 -0.31 -5.23 16 4 C 0.37 6.34 7.48 -16.61 -0.12 6.21 16 5 N -0.55 -7.83 9.11 -9.21 -0.08 -7.91 16 6 C 0.18 2.07 6.78 -82.53 -0.56 1.51 16 7 C -0.10 -0.77 10.16 36.00 0.37 -0.40 16 8 C -0.22 -2.39 9.71 -39.50 -0.38 -2.78 16 9 C -0.01 -0.17 8.02 -38.89 -0.31 -0.48 16 10 C -0.20 -3.46 5.55 -104.69 -0.58 -4.04 16 11 C 0.57 12.23 7.41 -12.47 -0.09 12.14 16 12 O -0.53 -13.26 16.33 -11.96 -0.20 -13.45 16 13 N -0.61 -12.80 3.33 -171.73 -0.57 -13.37 16 14 C 0.10 1.69 5.13 -2.53 -0.01 1.68 16 15 C -0.12 -2.33 6.22 -24.58 -0.15 -2.48 16 16 C 0.25 5.99 0.86 -89.91 -0.08 5.91 16 17 O -0.59 -14.65 13.09 -35.23 -0.46 -15.11 16 18 C -0.54 -14.00 8.11 -34.44 -0.28 -14.28 16 19 H 0.07 1.73 7.76 -52.49 -0.41 1.33 16 20 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 21 N -0.90 -23.83 10.98 55.43 0.61 -23.22 16 22 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 C 0.10 2.54 5.54 -3.04 -0.02 2.52 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.41 8.07 -51.93 -0.42 0.00 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 1.86 5.51 -52.49 -0.29 1.57 16 37 H 0.06 0.94 6.57 -51.93 -0.34 0.59 16 38 H 0.07 1.08 7.27 -51.93 -0.38 0.70 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 41 H 0.39 10.02 6.99 45.56 0.32 10.33 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.07 1.76 7.81 -51.93 -0.41 1.36 16 44 H 0.07 1.75 8.07 -51.93 -0.42 1.33 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -31.68 362.56 -7.98 -39.66 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.69 Total: 10.75 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.71 Total: 7.00 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.05 Total: -44.51 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.97 Total: -33.79 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.68 -7.98 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.312 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds