Wall clock time and date at job start Tue Mar 31 2020 12:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.46943 * 2 1 4 4 C 1.35431 * 116.99317 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80322 * 0.02562 * 4 3 2 6 6 C 1.31887 * 121.79989 * 179.97438 * 5 4 3 7 7 C 1.50692 * 119.40443 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.18289 * 359.97438 * 6 5 4 9 9 C 1.38337 * 119.46479 * 359.76493 * 8 6 5 10 10 C 1.39996 * 118.34547 * 0.47492 * 9 8 6 11 11 C 1.47517 * 120.59677 * 179.80116 * 10 9 8 12 12 O 1.21584 * 120.00257 * 215.67178 * 11 10 9 13 13 N 1.34783 * 119.99991 * 35.67809 * 11 10 9 14 14 C 1.47422 * 125.64563 * 355.77344 * 13 11 10 15 15 C 1.54911 * 104.83030 * 155.91062 * 14 13 11 16 16 C 1.55157 * 101.61796 * 36.99065 * 15 14 13 17 17 O 1.42900 * 110.71995 * 82.88085 * 16 15 14 18 18 C 1.50697 * 110.72092 * 206.15435 * 16 15 14 19 19 H 1.08001 * 119.99855 * 0.02562 * 18 16 15 20 20 C 1.37883 * 120.00210 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99669 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00037 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47305 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46969 * 120.00415 * 22 20 18 25 25 H 1.48496 * 109.47166 * 240.00284 * 22 20 18 26 26 C 1.47024 * 125.64708 * 175.81952 * 13 11 10 27 27 H 1.09002 * 109.47284 * 300.00294 * 1 2 3 28 28 H 1.09007 * 109.46841 * 59.99406 * 1 2 3 29 29 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47064 * 240.00141 * 2 1 3 31 31 H 1.09000 * 109.46661 * 120.00233 * 2 1 3 32 32 H 1.08996 * 109.47053 * 90.00667 * 7 6 5 33 33 H 1.09006 * 109.47215 * 210.00027 * 7 6 5 34 34 H 1.09001 * 109.47793 * 330.00375 * 7 6 5 35 35 H 1.08000 * 120.26797 * 180.02562 * 8 6 5 36 36 H 1.08002 * 120.82927 * 180.25058 * 9 8 6 37 37 H 1.09000 * 110.37000 * 37.07128 * 14 13 11 38 38 H 1.08995 * 110.36912 * 274.74674 * 14 13 11 39 39 H 1.09005 * 111.00659 * 155.08547 * 15 14 13 40 40 H 1.09000 * 111.00596 * 278.89799 * 15 14 13 41 41 H 0.96703 * 113.99617 * 180.02562 * 17 16 15 42 42 H 0.96998 * 120.00211 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.87993 * 300.43432 * 26 13 11 44 44 H 1.08998 * 109.88058 * 61.45341 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0005 6 6 5.4635 0.6001 0.0005 7 6 6.3264 -0.6353 -0.0001 8 6 6.0625 1.8472 0.0000 9 6 5.2715 2.9820 -0.0054 10 6 3.8806 2.8228 -0.0001 11 6 2.9902 3.9989 -0.0011 12 8 1.9434 3.9695 0.6166 13 7 3.3370 5.1061 -0.6870 14 6 4.6096 5.3100 -1.4027 15 6 4.2914 6.3748 -2.4819 16 6 3.3017 7.3001 -1.7256 17 8 4.0084 8.2429 -0.9170 18 6 2.3862 8.0054 -2.6927 19 1 2.4808 7.8271 -3.7537 20 6 1.4271 8.8776 -2.2231 21 7 1.3117 9.0943 -0.9311 22 14 0.2928 9.7525 -3.4220 23 1 0.6254 9.3398 -4.8091 24 1 -1.1164 9.3917 -3.1231 25 1 0.4672 11.2209 -3.2867 26 6 2.5092 6.3109 -0.8444 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 6.5345 -0.9326 -1.0279 33 1 7.2642 -0.4239 0.5139 34 1 5.8049 -1.4432 0.5133 35 1 7.1390 1.9340 -0.0004 36 1 5.7158 3.9664 -0.0100 37 1 4.9347 4.3809 -1.8708 38 1 5.3742 5.6793 -0.7194 39 1 5.1907 6.9184 -2.7716 40 1 3.8151 5.9204 -3.3507 41 1 3.4351 8.8448 -0.4229 42 1 0.6373 9.7082 -0.6006 43 1 1.5686 6.0534 -1.3311 44 1 2.3122 6.7554 0.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:21 Heat of formation + Delta-G solvation = -107.514448 kcal Electronic energy + Delta-G solvation = -27624.296545 eV Core-core repulsion = 23734.144164 eV Total energy + Delta-G solvation = -3890.152380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09852 -40.69677 -39.25473 -38.85587 -36.20089 -34.26523 -34.18806 -33.30388 -31.94591 -31.70162 -29.77654 -28.92603 -27.03294 -24.90344 -24.82389 -23.72507 -22.93422 -21.53493 -20.90803 -19.30742 -19.19362 -18.34393 -17.80764 -17.52062 -17.22060 -16.68288 -16.40816 -16.09458 -15.59320 -15.32628 -15.13781 -14.79709 -14.76074 -14.67096 -14.54760 -14.00051 -13.74329 -13.58949 -13.46175 -13.40782 -13.23481 -12.98721 -12.89595 -12.84684 -12.55199 -12.45242 -12.32718 -12.26172 -12.13418 -11.71260 -11.31831 -11.19949 -10.93423 -10.72739 -10.61055 -10.28982 -9.71795 -9.42340 -8.29327 -6.45246 -0.32740 0.19322 1.38672 1.41920 1.52769 1.66953 1.94424 2.00839 2.36333 2.65436 2.97128 3.06301 3.52899 3.67006 3.78431 3.85406 4.00280 4.06650 4.09411 4.14386 4.22314 4.28287 4.35355 4.43598 4.53824 4.64364 4.71273 4.76041 4.84799 4.85541 4.93476 4.97276 5.00250 5.08487 5.14372 5.17033 5.23278 5.34348 5.47487 5.50638 5.73351 6.00960 6.20083 6.54150 6.63187 6.72863 7.10369 7.26897 7.36046 8.77119 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.003680 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.262877 B = 7606.624414 C = 8746.981383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.315 6.315 4 C 0.355 3.645 5 N -0.552 5.552 6 C 0.181 3.819 7 C -0.102 4.102 8 C -0.201 4.201 9 C -0.009 4.009 10 C -0.233 4.233 11 C 0.566 3.434 12 O -0.584 6.584 13 N -0.610 5.610 14 C 0.102 3.898 15 C -0.113 4.113 16 C 0.236 3.764 17 O -0.586 6.586 18 C -0.558 4.558 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.121 3.879 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.189 0.811 36 H 0.166 0.834 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.379 0.621 42 H 0.271 0.729 43 H 0.030 0.970 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 -19.159 -0.083 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.221 6.221 4 C 0.176 3.824 5 N -0.278 5.278 6 C 0.044 3.956 7 C -0.159 4.159 8 C -0.221 4.221 9 C -0.034 4.034 10 C -0.239 4.239 11 C 0.356 3.644 12 O -0.465 6.465 13 N -0.342 5.342 14 C -0.019 4.019 15 C -0.150 4.150 16 C 0.195 3.805 17 O -0.395 6.395 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.176 4.176 21 N -0.558 5.558 22 Si 0.790 3.210 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.206 0.794 36 H 0.183 0.817 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.229 0.771 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.187 -20.081 0.154 22.987 hybrid contribution -1.685 1.906 0.074 2.545 sum 9.502 -18.175 0.228 20.510 Atomic orbital electron populations 1.21844 0.91893 1.04299 1.02591 1.22867 0.95955 0.79789 1.02757 1.86427 1.16986 1.32425 1.86265 1.19814 0.84465 0.88804 0.89322 1.67354 1.07266 1.31261 1.21957 1.22030 0.88171 0.97534 0.87906 1.20946 0.98143 0.91977 1.04850 1.22195 1.03370 0.90619 1.05902 1.22159 0.89495 1.02232 0.89539 1.19833 0.95593 0.90849 1.17618 1.18131 0.85478 0.82212 0.78537 1.90729 1.27364 1.83084 1.45314 1.48696 1.19913 1.14885 1.50742 1.22733 0.85156 0.99835 0.94182 1.22776 1.00088 0.95282 0.96898 1.19675 0.88683 0.85345 0.86780 1.86048 1.39232 1.50065 1.64202 1.21902 1.17249 1.26227 0.94196 0.91325 1.25841 0.98095 0.96716 0.96969 1.69686 1.35681 1.36719 1.13668 0.85399 0.77970 0.78289 0.79351 1.18788 1.21138 1.20048 1.22588 0.93985 0.84761 0.98917 0.92767 0.92632 0.86996 0.90843 0.91105 0.88213 0.87195 0.90483 0.79360 0.81697 0.88265 0.89558 0.88445 0.90140 0.77067 0.91944 0.95183 0.95231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 10.28 71.98 0.74 -2.65 16 2 C 0.06 1.61 6.03 71.98 0.43 2.04 16 3 O -0.31 -11.66 8.80 -70.77 -0.62 -12.28 16 4 C 0.36 12.10 7.48 85.13 0.64 12.74 16 5 N -0.55 -14.85 9.11 -296.06 -2.70 -17.55 16 6 C 0.18 3.46 6.78 42.57 0.29 3.75 16 7 C -0.10 -0.97 10.16 71.23 0.72 -0.25 16 8 C -0.20 -3.41 9.71 22.32 0.22 -3.20 16 9 C -0.01 -0.22 8.02 22.72 0.18 -0.04 16 10 C -0.23 -8.09 5.55 -19.91 -0.11 -8.20 16 11 C 0.57 25.32 7.41 86.69 0.64 25.96 16 12 O -0.58 -31.39 16.33 12.52 0.20 -31.19 16 13 N -0.61 -26.45 3.33 -815.48 -2.71 -29.16 16 14 C 0.10 3.38 5.13 86.86 0.45 3.83 16 15 C -0.11 -4.29 6.22 31.99 0.20 -4.09 16 16 C 0.24 11.56 0.86 -10.33 -0.01 11.55 16 17 O -0.59 -29.80 13.09 -148.98 -1.95 -31.75 16 18 C -0.56 -29.61 8.11 25.60 0.21 -29.40 16 19 H 0.07 3.54 7.76 -2.91 -0.02 3.52 16 20 C 0.02 1.29 5.28 84.66 0.45 1.74 16 21 N -0.92 -50.74 10.98 21.45 0.24 -50.50 16 22 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.12 6.25 5.54 86.75 0.48 6.73 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.45 8.07 -2.38 -0.02 0.43 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.17 3.45 5.51 -2.91 -0.02 3.44 16 37 H 0.10 2.61 6.57 -2.39 -0.02 2.60 16 38 H 0.09 2.55 7.27 -2.39 -0.02 2.53 16 39 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.08 2.98 8.02 -2.39 -0.02 2.96 16 41 H 0.38 20.37 6.99 -74.06 -0.52 19.85 16 42 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.03 1.72 7.81 -2.39 -0.02 1.70 16 44 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 Total: -1.00 -75.19 362.56 0.51 -74.68 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.51 Total: 32.61 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 5.52 Total: 20.51 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.18 Total: -97.21 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: -2.37 Total: -75.22 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.19 0.51 -74.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.833 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds