Wall clock time and date at job start Tue Mar 31 2020 12:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47585 * 2 1 4 4 N 1.46500 * 109.47431 * 240.00214 * 2 1 3 5 5 C 1.34782 * 120.00035 * 84.99531 * 4 2 1 6 6 O 1.21693 * 119.99747 * 0.02562 * 5 4 2 7 7 C 1.46658 * 119.99761 * 180.02562 * 5 4 2 8 8 C 1.36546 * 125.98484 * 179.72002 * 7 5 4 9 9 C 1.40363 * 106.70878 * 179.85076 * 8 7 5 10 10 C 1.35128 * 107.11118 * 0.41293 * 9 8 7 11 11 O 1.33926 * 108.76888 * 359.73988 * 10 9 8 12 12 C 1.50698 * 109.47234 * 120.00448 * 2 1 3 13 13 O 1.21281 * 120.00457 * 97.26363 * 12 2 1 14 14 N 1.34777 * 119.99737 * 277.26548 * 12 2 1 15 15 C 1.46928 * 120.63392 * 4.79308 * 14 12 2 16 16 C 1.52759 * 109.00986 * 233.58728 * 15 14 12 17 17 C 1.53042 * 109.38311 * 305.58489 * 16 15 14 18 18 C 1.53038 * 109.53492 * 61.23832 * 17 16 15 19 19 H 1.09003 * 109.49724 * 58.59060 * 18 17 16 20 20 C 1.50708 * 109.49246 * 178.68269 * 18 17 16 21 21 H 1.07998 * 119.99489 * 119.84493 * 20 18 17 22 22 C 1.37872 * 120.00068 * 299.83774 * 20 18 17 23 23 N 1.31515 * 120.00452 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99826 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47103 * 60.00383 * 24 22 20 26 26 H 1.48501 * 109.46832 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46881 * 300.00122 * 24 22 20 28 28 C 1.46923 * 120.63279 * 185.07621 * 14 12 2 29 29 H 1.09004 * 109.47286 * 56.07548 * 1 2 3 30 30 H 1.08991 * 109.47239 * 296.07652 * 1 2 3 31 31 H 1.09000 * 109.47130 * 176.07072 * 1 2 3 32 32 H 0.97004 * 120.00101 * 265.00657 * 4 2 1 33 33 H 1.08008 * 126.64287 * 359.96041 * 8 7 5 34 34 H 1.07997 * 126.44270 * 180.14843 * 9 8 7 35 35 H 1.08001 * 125.61494 * 179.77856 * 10 9 8 36 36 H 1.09003 * 109.57979 * 353.42165 * 15 14 12 37 37 H 1.09001 * 109.58490 * 113.84045 * 15 14 12 38 38 H 1.08996 * 109.56300 * 185.55066 * 16 15 14 39 39 H 1.08998 * 109.38914 * 65.51195 * 16 15 14 40 40 H 1.09000 * 109.45499 * 301.21984 * 17 16 15 41 41 H 1.09000 * 109.45863 * 181.26480 * 17 16 15 42 42 H 0.96997 * 120.00252 * 179.97438 * 23 22 20 43 43 H 1.09006 * 109.58553 * 246.15879 * 28 14 12 44 44 H 1.09007 * 109.58301 * 6.43573 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1627 -2.4117 7 6 2.6354 -0.7096 -3.5547 8 6 2.8069 -0.1520 -4.7893 9 6 3.2916 -1.1684 -5.6274 10 6 3.3846 -2.2899 -4.8794 11 8 2.9885 -2.0094 -3.6312 12 6 2.0323 -0.7105 1.2304 13 8 2.3597 -1.8765 1.1662 14 7 2.1178 -0.0501 2.4022 15 6 1.6276 1.3299 2.5213 16 6 2.7436 2.2073 3.0855 17 6 3.2495 1.6042 4.3979 18 6 3.8172 0.2078 4.1341 19 1 4.6262 0.2754 3.4066 20 6 4.3445 -0.3722 5.4213 21 1 3.9311 -1.2917 5.8084 22 6 5.3547 0.2710 6.1044 23 7 5.8579 1.3910 5.6331 24 14 6.0087 -0.4482 7.6995 25 1 6.5563 -1.8046 7.4431 26 1 7.0831 0.4270 8.2333 27 1 4.9064 -0.5385 8.6904 28 6 2.7084 -0.6942 3.5832 29 1 -0.3634 0.5736 -0.8528 30 1 -0.3633 0.4517 0.9230 31 1 -0.3633 -1.0252 -0.0704 32 1 2.2490 -1.6318 -1.1527 33 1 2.6097 0.8730 -5.0667 34 1 3.5391 -1.0731 -6.6743 35 1 3.7234 -3.2535 -5.2302 36 1 1.3353 1.6998 1.5385 37 1 0.7702 1.3563 3.1938 38 1 2.3607 3.2110 3.2701 39 1 3.5628 2.2567 2.3682 40 1 2.4244 1.5329 5.1066 41 1 4.0304 2.2414 4.8131 42 1 6.5683 1.8437 6.1139 43 1 1.9410 -0.8362 4.3442 44 1 3.1268 -1.6606 3.3014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:08 Heat of formation + Delta-G solvation = -58.930629 kcal Electronic energy + Delta-G solvation = -27111.663642 eV Core-core repulsion = 23223.618014 eV Total energy + Delta-G solvation = -3888.045628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.92096 -40.41053 -39.14749 -36.99180 -35.14090 -33.63420 -33.31090 -31.74497 -31.22676 -30.21470 -29.45263 -25.61322 -25.12555 -24.28517 -22.65752 -21.99133 -21.74870 -20.52564 -19.94641 -19.14174 -18.25193 -17.02975 -16.63147 -16.47246 -16.40438 -15.95374 -15.19710 -15.02727 -14.72732 -14.36147 -14.09921 -13.71839 -13.43566 -13.34698 -13.25146 -13.16160 -12.94651 -12.77354 -12.61086 -12.28566 -12.13007 -11.98603 -11.68812 -10.99279 -10.88514 -10.80064 -10.51822 -10.35945 -10.33638 -9.99786 -9.90619 -9.62032 -9.48738 -9.26814 -8.93316 -8.87782 -8.42616 -8.02152 -6.05124 -4.12754 0.82104 2.08556 2.38538 2.72064 2.98025 3.00469 3.29349 3.34072 3.36209 3.48335 4.39444 4.40836 4.53510 4.62432 4.75519 4.97549 5.00859 5.23241 5.29487 5.34898 5.46353 5.48847 5.56439 5.59274 5.65350 5.75701 5.96955 6.02049 6.03462 6.14751 6.28336 6.32649 6.42270 6.55378 6.59342 6.73247 6.85257 7.10927 7.27186 7.30522 7.64841 7.78413 7.88365 7.92233 8.03040 8.30103 8.42817 8.90437 9.52416 11.00404 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019187 B = 0.002835 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.961434 B = 9872.491107 C =10371.734391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.114 0.886 4 N -0.700 5.700 5 C 0.606 3.394 6 O -0.522 6.522 7 C -0.076 4.076 8 C -0.120 4.120 9 C -0.227 4.227 10 C -0.005 4.005 11 O -0.161 6.161 12 C 0.508 3.492 13 O -0.547 6.547 14 N -0.594 5.594 15 C 0.103 3.897 16 C -0.137 4.137 17 C -0.113 4.113 18 C 0.040 3.960 19 H 0.029 0.971 20 C -0.516 4.516 21 H 0.057 0.943 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.117 3.883 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.211 0.789 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.262 0.738 43 H 0.058 0.942 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -2.163 -18.360 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 H 0.132 0.868 4 N -0.353 5.353 5 C 0.392 3.608 6 O -0.400 6.400 7 C -0.128 4.128 8 C -0.141 4.141 9 C -0.246 4.246 10 C -0.075 4.075 11 O -0.056 6.056 12 C 0.294 3.706 13 O -0.426 6.426 14 N -0.325 5.325 15 C -0.020 4.020 16 C -0.175 4.175 17 C -0.151 4.151 18 C 0.021 3.979 19 H 0.047 0.953 20 C -0.555 4.555 21 H 0.075 0.925 22 C -0.138 4.138 23 N -0.527 5.527 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.003 4.003 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.034 -1.995 -18.060 20.291 hybrid contribution 0.639 -0.631 0.671 1.121 sum -8.395 -2.627 -17.388 19.486 Atomic orbital electron populations 1.22115 0.92504 1.03414 1.03605 1.20922 0.96010 0.98115 0.83530 0.86784 1.45702 1.66126 1.15187 1.08283 1.16502 0.77612 0.85643 0.80996 1.90880 1.50963 1.14067 1.84051 1.22016 1.10993 0.82714 0.97078 1.21984 0.99753 1.01281 0.91076 1.21869 1.08017 0.92890 1.01869 1.24454 1.00762 1.00978 0.81308 1.84104 1.63632 1.26413 1.31435 1.20304 0.78690 0.87084 0.84529 1.90661 1.50706 1.16276 1.84963 1.48263 1.59028 1.14491 1.10741 1.21823 0.97625 0.81545 1.01010 1.21944 0.97366 0.97668 1.00514 1.21641 1.00214 1.00108 0.93127 1.18975 0.91770 0.91072 0.96052 0.95259 1.21017 1.18945 1.08686 1.06814 0.92492 1.24934 0.96198 0.94892 0.97742 1.69859 1.26801 1.16774 1.39252 0.86631 0.78577 0.79080 0.83562 1.20219 1.21292 1.20231 1.22071 0.96586 0.97789 0.83877 0.90804 0.90559 0.91514 0.74675 0.82131 0.82544 0.77287 0.90793 0.91353 0.92138 0.92301 0.94455 0.88546 0.92854 0.92394 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.21 37.15 0.34 -1.46 16 2 C 0.12 1.72 2.11 -69.09 -0.15 1.57 16 3 H 0.11 1.63 6.05 -51.93 -0.31 1.31 16 4 N -0.70 -9.72 5.04 -56.25 -0.28 -10.00 16 5 C 0.61 8.53 7.75 -12.86 -0.10 8.43 16 6 O -0.52 -8.37 16.53 5.20 0.09 -8.28 16 7 C -0.08 -0.93 7.13 -36.80 -0.26 -1.20 16 8 C -0.12 -1.26 10.62 -39.39 -0.42 -1.68 16 9 C -0.23 -1.83 10.87 -39.89 -0.43 -2.26 16 10 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 11 O -0.16 -1.78 10.40 5.03 0.05 -1.73 16 12 C 0.51 8.81 6.92 -10.99 -0.08 8.73 16 13 O -0.55 -11.02 15.40 5.56 0.09 -10.93 16 14 N -0.59 -10.57 2.98 -173.03 -0.52 -11.09 16 15 C 0.10 1.54 5.65 -3.93 -0.02 1.52 16 16 C -0.14 -2.38 6.06 -26.83 -0.16 -2.54 16 17 C -0.11 -2.47 4.96 -26.69 -0.13 -2.61 16 18 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 19 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -13.75 8.56 -34.44 -0.29 -14.05 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C 0.12 2.46 5.64 -3.72 -0.02 2.44 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.78 7.15 -51.93 -0.37 0.41 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.42 5.74 7.51 -40.82 -0.31 5.43 16 33 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.07 0.92 5.06 -51.93 -0.26 0.66 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.79 7.04 -51.92 -0.37 1.42 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -31.42 361.89 -7.31 -38.73 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.13 Total: 6.43 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.67 Total: -0.38 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.17 Total: -45.18 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.22 Total: -20.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.42 -7.31 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.201 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds