Wall clock time and date at job start Tue Mar 31 2020 12:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46755 * 2 1 4 4 C 1.46500 * 120.00188 * 269.99926 * 3 2 1 5 5 C 1.50700 * 109.46852 * 270.00317 * 4 3 2 6 6 H 1.07993 * 120.00359 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99625 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00572 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46771 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47018 * 119.99394 * 9 7 5 12 12 H 1.48491 * 109.47529 * 239.99808 * 9 7 5 13 13 C 1.34778 * 119.99984 * 89.99848 * 3 2 1 14 14 O 1.21287 * 119.99949 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00249 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47569 * 179.97438 * 15 13 3 17 17 C 1.34757 * 117.00415 * 180.02562 * 16 15 13 18 18 O 1.21518 * 120.00289 * 359.97438 * 17 16 15 19 19 C 1.47381 * 120.00421 * 180.02562 * 17 16 15 20 20 C 1.39864 * 120.07036 * 353.75829 * 19 17 16 21 21 C 1.36576 * 120.04658 * 180.23124 * 20 19 17 22 22 C 1.39235 * 120.20502 * 359.49916 * 21 20 19 23 23 N 1.39010 * 119.92884 * 180.25513 * 22 21 20 24 24 C 1.39248 * 120.14681 * 0.50155 * 22 21 20 25 25 C 1.37639 * 119.94636 * 359.75372 * 24 22 21 26 26 C 1.50696 * 120.09910 * 179.97438 * 25 24 22 27 27 H 1.08996 * 109.47076 * 60.00341 * 1 2 3 28 28 H 1.09010 * 109.46713 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47321 * 299.99467 * 1 2 3 30 30 H 1.08993 * 109.47387 * 240.00067 * 2 1 3 31 31 H 1.09005 * 109.46873 * 119.99628 * 2 1 3 32 32 H 1.09002 * 109.46869 * 29.99772 * 4 3 2 33 33 H 1.08997 * 109.47252 * 150.00009 * 4 3 2 34 34 H 0.96996 * 120.00448 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47127 * 59.99960 * 15 13 3 36 36 H 1.09001 * 109.47161 * 300.00317 * 15 13 3 37 37 H 1.07995 * 119.97606 * 359.96055 * 20 19 17 38 38 H 1.07997 * 119.89385 * 179.72855 * 21 20 19 39 39 H 0.96997 * 120.00261 * 180.24893 * 23 22 21 40 40 H 0.96994 * 119.99827 * 0.24753 * 23 22 21 41 41 H 1.07999 * 120.02414 * 179.77371 * 24 22 21 42 42 H 1.08998 * 109.47318 * 263.43172 * 26 25 24 43 43 H 1.09007 * 109.47197 * 23.43255 * 26 25 24 44 44 H 1.09003 * 109.46846 * 143.42715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8773 8 7 3.3493 3.1267 -3.6175 9 14 5.9138 2.0978 -3.4163 10 1 6.6014 1.2425 -2.4158 11 1 5.9217 1.4191 -4.7372 12 1 6.6210 3.3990 -3.5240 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9912 1.3065 2.4723 16 8 2.3063 2.1958 3.5759 17 6 2.1347 1.7102 4.8212 18 8 1.7323 0.5747 4.9805 19 6 2.4340 2.5565 5.9900 20 6 3.0184 3.8148 5.8129 21 6 3.2999 4.5968 6.8967 22 6 2.9974 4.1501 8.1803 23 7 3.2815 4.9529 9.2790 24 6 2.4155 2.8987 8.3663 25 6 2.1340 2.1034 7.2788 26 6 1.5048 0.7484 7.4761 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.6754 3.5172 -4.4434 35 1 2.6210 0.4188 2.5303 36 1 0.9431 1.0126 2.5298 37 1 3.2512 4.1665 4.8187 38 1 3.7552 5.5661 6.7574 39 1 3.0745 4.6413 10.1739 40 1 3.6868 5.8248 9.1507 41 1 2.1850 2.5527 9.3630 42 1 2.2814 -0.0164 7.4750 43 1 0.9765 0.7284 8.4294 44 1 0.8014 0.5531 6.6667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728365273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:51 Heat of formation + Delta-G solvation = -94.723435 kcal Electronic energy + Delta-G solvation = -26416.086542 eV Core-core repulsion = 22526.488821 eV Total energy + Delta-G solvation = -3889.597720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67642 -39.45579 -38.69753 -36.35916 -35.26394 -35.01674 -32.83056 -32.57222 -30.17458 -29.88388 -28.76643 -27.35868 -26.37588 -23.56856 -23.04531 -22.64156 -21.92462 -20.73012 -18.64172 -18.00441 -17.31118 -16.86590 -16.66768 -16.53135 -16.27584 -15.98971 -15.33959 -14.71654 -14.54950 -14.36700 -14.09340 -13.87331 -13.46658 -13.34721 -13.21585 -12.94883 -12.74110 -12.68879 -12.39495 -12.19926 -12.05321 -12.00553 -11.59041 -11.21673 -11.17791 -10.90453 -10.81545 -10.79443 -10.58055 -10.43598 -10.12988 -10.05619 -9.62189 -9.02535 -8.94336 -8.43565 -7.93064 -7.71698 -6.04317 -4.08943 0.79405 1.25410 2.60668 2.62999 3.30163 3.30906 3.38683 3.42554 3.43527 3.69877 3.96141 4.45277 4.56825 4.67600 4.85323 4.94908 5.03264 5.18539 5.26443 5.29566 5.30481 5.31220 5.42668 5.58606 5.62523 5.66758 5.77066 5.78082 5.95763 6.02670 6.07003 6.13615 6.22258 6.34905 6.48053 6.52465 6.63204 7.03152 7.05410 7.28989 7.42374 7.50739 7.88887 7.93062 8.22500 8.33718 8.87833 9.02911 9.56136 11.03870 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.002784 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.913028 B =10055.032509 C =11169.851188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.052 3.948 16 O -0.328 6.328 17 C 0.511 3.489 18 O -0.516 6.516 19 C -0.192 4.192 20 C -0.002 4.002 21 C -0.219 4.219 22 C 0.254 3.746 23 N -0.868 5.868 24 C -0.221 4.221 25 C 0.033 3.967 26 C -0.125 4.125 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.400 0.600 40 H 0.401 0.599 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -2.161 24.384 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.243 6.243 17 C 0.359 3.641 18 O -0.407 6.407 19 C -0.195 4.195 20 C -0.021 4.021 21 C -0.241 4.241 22 C 0.146 3.854 23 N -0.404 5.404 24 C -0.244 4.244 25 C 0.032 3.968 26 C -0.181 4.181 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.228 0.772 40 H 0.230 0.770 41 H 0.145 0.855 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.258 -1.776 24.173 24.610 hybrid contribution 1.037 -0.058 -0.150 1.049 sum -3.221 -1.834 24.023 24.308 Atomic orbital electron populations 1.22234 0.96564 1.01659 1.02408 1.21503 0.93734 0.83974 1.03010 1.48202 1.63902 1.13398 1.07145 1.19328 0.96454 0.93717 0.77625 1.21470 0.96855 1.31903 1.06286 0.92339 1.24935 0.97900 0.94890 0.96383 1.69939 1.35620 1.33463 1.14343 0.86436 0.84593 0.78068 0.78289 1.19775 1.20976 1.20867 1.19738 0.79622 0.87136 0.84325 1.90707 1.44514 1.17544 1.86783 1.22917 1.02616 0.92662 0.84374 1.86608 1.78862 1.44662 1.14152 1.21120 0.74212 0.85598 0.83207 1.90757 1.43926 1.19629 1.86429 1.18664 1.13582 0.96958 0.90317 1.21084 0.90181 0.91067 0.99793 1.20332 1.10571 1.02534 0.90653 1.18034 0.89695 0.89811 0.87835 1.42480 1.70330 1.20963 1.06645 1.20334 1.10586 0.94736 0.98764 1.19718 0.91133 0.95388 0.90533 1.21146 1.01560 0.92565 1.02811 0.91828 0.91929 0.93100 0.89476 0.91712 0.94657 0.93713 0.92751 0.88760 0.88830 0.83883 0.85393 0.77172 0.77010 0.85469 0.90337 0.92275 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.61 2.46 -175.06 -0.43 -13.04 16 4 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.94 7.75 -10.99 -0.09 10.85 16 14 O -0.52 -13.52 16.08 -14.11 -0.23 -13.75 16 15 C 0.05 0.88 4.51 36.00 0.16 1.04 16 16 O -0.33 -5.78 9.01 -47.33 -0.43 -6.20 16 17 C 0.51 8.03 7.82 34.45 0.27 8.30 16 18 O -0.52 -8.30 13.12 -19.28 -0.25 -8.55 16 19 C -0.19 -2.60 5.88 -104.96 -0.62 -3.22 16 20 C 0.00 -0.03 9.55 -39.57 -0.38 -0.41 16 21 C -0.22 -2.19 9.82 -39.81 -0.39 -2.58 16 22 C 0.25 2.22 6.75 -83.86 -0.57 1.66 16 23 N -0.87 -4.49 9.05 32.41 0.29 -4.20 16 24 C -0.22 -2.06 9.51 -39.42 -0.37 -2.43 16 25 C 0.03 0.38 5.91 -104.24 -0.62 -0.23 16 26 C -0.12 -1.30 8.73 36.00 0.31 -0.98 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.45 7.40 -51.93 -0.38 1.07 16 36 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 37 H 0.14 1.88 7.61 -52.49 -0.40 1.48 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.40 1.30 8.83 -40.82 -0.36 0.94 16 40 H 0.40 1.44 8.83 -40.82 -0.36 1.08 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.47 8.04 -51.92 -0.42 0.05 16 44 H 0.10 1.16 5.85 -51.93 -0.30 0.86 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -35.02 373.90 -8.26 -43.27 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.19 Total: 1.24 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.37 Total: 4.50 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.60 Total: -43.06 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.91 Total: -28.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.02 -8.26 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728365273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.448 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds