Wall clock time and date at job start Tue Mar 31 2020 12:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47327 * 2 1 4 4 C 1.46501 * 119.99781 * 269.99825 * 3 2 1 5 5 C 1.50703 * 109.47044 * 269.99728 * 4 3 2 6 6 H 1.07993 * 120.00049 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99566 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00369 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99718 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46837 * 120.00025 * 9 7 5 12 12 H 1.48499 * 109.46877 * 240.00344 * 9 7 5 13 13 C 1.34771 * 120.00280 * 89.99700 * 3 2 1 14 14 O 1.21280 * 120.00488 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00058 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47691 * 179.97438 * 15 13 3 17 17 C 1.34225 * 117.00501 * 179.97438 * 16 15 13 18 18 O 1.20831 * 119.99624 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00136 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46953 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47163 * 180.02562 * 20 19 17 22 22 C 1.38225 * 119.61903 * 124.72524 * 21 20 19 23 23 C 1.38628 * 119.15868 * 179.75305 * 22 21 20 24 24 C 1.38681 * 118.42043 * 0.51112 * 23 22 21 25 25 C 1.38179 * 119.15955 * 359.73317 * 24 23 22 26 26 N 1.31858 * 119.61572 * 305.00069 * 21 20 19 27 27 H 1.09001 * 109.47056 * 300.00319 * 1 2 3 28 28 H 1.09001 * 109.46845 * 59.99931 * 1 2 3 29 29 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46845 * 120.00069 * 2 1 3 32 32 H 1.08993 * 109.47428 * 30.00241 * 4 3 2 33 33 H 1.09004 * 109.46891 * 149.99905 * 4 3 2 34 34 H 0.97004 * 120.00256 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47475 * 59.99652 * 15 13 3 36 36 H 1.09003 * 109.46888 * 299.99887 * 15 13 3 37 37 H 1.09001 * 109.47093 * 60.00614 * 19 17 16 38 38 H 1.08995 * 109.47083 * 300.00174 * 19 17 16 39 39 H 1.08997 * 109.47394 * 59.99888 * 20 19 17 40 40 H 1.09004 * 109.47644 * 299.99960 * 20 19 17 41 41 H 1.07994 * 120.42134 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.79027 * 180.26248 * 23 22 21 43 43 H 1.07997 * 120.41814 * 179.70894 * 24 23 22 44 44 H 1.08004 * 119.61107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3426 1.2301 -1.0961 7 6 4.1491 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9132 2.0953 -3.4176 10 1 6.6005 1.2393 -2.4174 11 1 5.9202 1.4160 -4.7381 12 1 6.6210 3.3963 -3.5263 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1955 3.5759 17 6 2.1361 1.7118 4.8163 18 8 1.7369 0.5824 4.9746 19 6 2.4431 2.5770 6.0114 20 6 2.1657 1.7912 7.2945 21 6 2.4721 2.6566 8.4897 22 6 1.4990 2.8663 9.4487 23 6 1.7928 3.6598 10.5468 24 6 3.0566 4.2240 10.6343 25 6 3.9764 3.9737 9.6338 26 7 3.6636 3.2094 8.6057 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6752 3.5159 -4.4441 35 1 2.6227 0.4187 2.5299 36 1 0.9443 1.0116 2.5302 37 1 1.8143 3.4670 5.9868 38 1 3.4920 2.8724 5.9862 39 1 2.7947 0.9014 7.3189 40 1 1.1169 1.4954 7.3200 41 1 0.5234 2.4148 9.3457 42 1 1.0537 3.8377 11.3140 43 1 3.3186 4.8513 11.4734 44 1 4.9629 4.4090 9.6948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744880776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:18 Heat of formation + Delta-G solvation = -91.400880 kcal Electronic energy + Delta-G solvation = -25677.357886 eV Core-core repulsion = 21787.904242 eV Total energy + Delta-G solvation = -3889.453644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76742 -40.34112 -38.94141 -36.50469 -35.29360 -34.51460 -32.83814 -32.72100 -30.79549 -30.16579 -29.08444 -26.73106 -25.55688 -23.87503 -23.08334 -22.72259 -22.05699 -20.57528 -18.65012 -17.96856 -17.11337 -16.91183 -16.61174 -16.51669 -16.35194 -15.99175 -15.54606 -15.19814 -14.99378 -14.44240 -14.14199 -13.89069 -13.70877 -13.46629 -13.24712 -13.12164 -12.76755 -12.64347 -12.25783 -12.10314 -12.05046 -11.92822 -11.61467 -11.48045 -11.23493 -10.92943 -10.85630 -10.62498 -10.55640 -10.50355 -10.24298 -10.14268 -9.78035 -9.63801 -9.34731 -8.98002 -8.44740 -7.74445 -6.05528 -4.10225 0.71288 0.90230 2.17679 2.49551 3.26601 3.30190 3.38076 3.41939 3.42908 3.82728 3.96143 4.32779 4.44168 4.47279 4.59151 4.70125 4.74797 4.86116 4.89238 4.94144 5.12457 5.22991 5.23220 5.29241 5.32582 5.37792 5.38665 5.55911 5.59225 5.73569 5.75432 5.79428 5.81790 6.00024 6.19410 6.31173 6.41716 6.45268 7.00407 7.40218 7.48127 7.63329 7.72300 7.90864 8.20870 8.30679 8.85640 9.00464 9.54861 11.02639 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.002208 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.051576 B =12676.619065 C =13663.008780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.329 6.329 17 C 0.463 3.537 18 O -0.516 6.516 19 C -0.105 4.105 20 C -0.057 4.057 21 C 0.131 3.869 22 C -0.168 4.168 23 C -0.074 4.074 24 C -0.180 4.180 25 C 0.104 3.896 26 N -0.480 5.480 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 -3.054 26.253 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.243 6.243 17 C 0.306 3.694 18 O -0.405 6.405 19 C -0.142 4.142 20 C -0.095 4.095 21 C -0.006 4.006 22 C -0.187 4.187 23 C -0.100 4.100 24 C -0.200 4.200 25 C -0.053 4.053 26 N -0.190 5.190 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.298 -2.818 25.413 26.112 hybrid contribution 0.258 -0.156 0.285 0.415 sum -5.040 -2.974 25.698 26.356 Atomic orbital electron populations 1.22233 0.96556 1.01671 1.02398 1.21504 0.93735 0.83973 1.03026 1.48208 1.63859 1.13395 1.07149 1.19335 0.96488 0.93717 0.77589 1.21468 0.96860 1.31969 1.06288 0.92325 1.24942 0.97939 0.94891 0.96376 1.69940 1.35616 1.33427 1.14336 0.86428 0.84540 0.78088 0.78282 1.19778 1.20972 1.20835 1.19730 0.79712 0.87161 0.84328 1.90717 1.44436 1.17542 1.86745 1.22962 1.02645 0.92683 0.84498 1.86574 1.78373 1.44956 1.14423 1.23765 0.73951 0.86917 0.84765 1.90653 1.42895 1.20138 1.86800 1.21260 1.06383 0.98400 0.88206 1.20356 1.03614 0.96941 0.88601 1.21191 0.89227 0.94862 0.95347 1.22015 1.00834 1.00520 0.95374 1.21612 0.96654 0.94527 0.97172 1.22170 0.94859 1.01950 1.00974 1.22799 0.99636 0.93758 0.89100 1.67492 1.19472 1.08360 1.23636 0.93147 0.91796 0.91908 0.89432 0.91743 0.94630 0.93711 0.92735 0.88681 0.88781 0.87608 0.86359 0.88751 0.89177 0.84585 0.84790 0.84791 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.10 1.61 5.93 -4.05 -0.02 1.59 16 3 N -0.59 -12.52 2.46 -175.07 -0.43 -12.95 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.85 7.75 -10.99 -0.09 10.76 16 14 O -0.52 -13.54 16.08 -14.10 -0.23 -13.77 16 15 C 0.05 0.82 4.50 36.01 0.16 0.98 16 16 O -0.33 -5.53 9.75 -45.89 -0.45 -5.98 16 17 C 0.46 6.39 7.96 36.00 0.29 6.68 16 18 O -0.52 -7.75 15.73 -18.75 -0.30 -8.04 16 19 C -0.10 -1.09 5.67 -27.89 -0.16 -1.25 16 20 C -0.06 -0.52 4.90 -27.88 -0.14 -0.65 16 21 C 0.13 1.19 6.18 -82.58 -0.51 0.68 16 22 C -0.17 -1.21 9.71 -39.44 -0.38 -1.59 16 23 C -0.07 -0.45 10.18 -39.27 -0.40 -0.85 16 24 C -0.18 -1.11 10.11 -39.44 -0.40 -1.51 16 25 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 26 N -0.48 -4.86 9.88 -9.47 -0.09 -4.95 16 27 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.10 1.42 7.39 -51.93 -0.38 1.04 16 36 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.12 1.26 7.95 -51.93 -0.41 0.85 16 39 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.09 0.71 7.83 -51.93 -0.41 0.30 16 41 H 0.14 0.70 7.95 -52.49 -0.42 0.28 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -35.81 380.70 -8.38 -44.19 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.43 Total: -1.73 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.91 Total: 6.36 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.21 Total: -43.70 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.97 Total: -27.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.81 -8.38 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744880776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.206 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds