Wall clock time and date at job start Tue Mar 31 2020 12:35:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46508 * 109.46836 * 2 1
4 4 C 1.46494 * 119.99938 * 269.99408 * 3 2 1
5 5 C 1.52994 * 109.47426 * 270.00076 * 4 3 2
6 6 C 1.52998 * 109.46980 * 65.00409 * 5 4 3
7 7 C 1.50702 * 109.47169 * 185.00253 * 5 4 3
8 8 N 1.27948 * 119.99716 * 334.99782 * 7 5 4
9 9 Si 1.86800 * 120.00225 * 155.00169 * 7 5 4
10 10 H 1.48496 * 109.47028 * 59.99894 * 9 7 5
11 11 H 1.48500 * 109.47204 * 179.97438 * 9 7 5
12 12 H 1.48498 * 109.47072 * 299.99951 * 9 7 5
13 13 C 1.34782 * 119.99817 * 89.99892 * 3 2 1
14 14 O 1.21273 * 119.99787 * 179.97438 * 13 3 2
15 15 C 1.50699 * 120.00102 * 0.02562 * 13 3 2
16 16 O 1.42894 * 109.47071 * 180.02562 * 15 13 3
17 17 C 1.35000 * 116.99943 * 179.97438 * 16 15 13
18 18 O 1.21711 * 120.00149 * 359.97438 * 17 16 15
19 19 C 1.41261 * 119.99933 * 180.02562 * 17 16 15
20 20 C 1.35749 * 119.99663 * 188.38965 * 19 17 16
21 21 C 1.41589 * 120.00408 * 32.31606 * 20 19 17
22 22 C 1.38325 * 126.26393 * 187.22325 * 21 20 19
23 23 C 1.39765 * 107.07286 * 180.02562 * 22 21 20
24 24 C 1.35528 * 107.91463 * 359.76275 * 23 22 21
25 25 N 1.35727 * 108.91900 * 0.39196 * 24 23 22
26 26 H 0.97008 * 125.68746 * 179.86508 * 25 24 23
27 27 H 1.09007 * 109.46682 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47242 * 299.99871 * 1 2 3
29 29 H 1.08999 * 109.47128 * 60.00530 * 1 2 3
30 30 H 1.09004 * 109.47690 * 240.00056 * 2 1 3
31 31 H 1.08999 * 109.47128 * 119.99469 * 2 1 3
32 32 H 1.09005 * 109.47195 * 30.00667 * 4 3 2
33 33 H 1.09003 * 109.46825 * 150.00147 * 4 3 2
34 34 H 1.09001 * 109.47402 * 304.99956 * 5 4 3
35 35 H 1.09006 * 109.47043 * 179.97438 * 6 5 4
36 36 H 1.08998 * 109.47213 * 299.99658 * 6 5 4
37 37 H 1.08997 * 109.47707 * 59.99948 * 6 5 4
38 38 H 0.97002 * 119.99608 * 179.97438 * 8 7 5
39 39 H 1.09005 * 109.47284 * 59.99949 * 15 13 3
40 40 H 1.09001 * 109.47209 * 299.99819 * 15 13 3
41 41 H 1.07998 * 119.99961 * 8.38799 * 19 17 16
42 42 H 1.08002 * 119.99581 * 212.31403 * 20 19 17
43 43 H 1.08000 * 126.46863 * 0.02800 * 22 21 20
44 44 H 1.07997 * 126.04038 * 180.02562 * 23 22 21
45 45 H 1.07997 * 125.54314 * 180.23857 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2625 2.0719 -1.2687
5 6 3.7075 1.8315 -1.7103
6 6 3.9076 0.3453 -2.0134
7 6 3.9953 2.6401 -2.9490
8 7 3.0381 2.9828 -3.7259
9 14 5.7493 3.1418 -3.3504
10 1 6.5869 1.9264 -3.5126
11 1 5.7638 3.9245 -4.6123
12 1 6.2915 3.9728 -2.2456
13 6 2.2428 2.0167 1.1673
14 8 2.6474 3.1599 1.1673
15 6 1.9922 1.3060 2.4724
16 8 2.3010 2.1818 3.5585
17 6 2.1288 1.6953 4.8060
18 8 1.7267 0.5577 4.9654
19 6 2.4144 2.5070 5.9262
20 6 2.4064 1.9702 7.1730
21 6 2.7936 0.6220 7.3659
22 6 2.7022 -0.0948 8.5454
23 6 3.1936 -1.3771 8.2854
24 6 3.5636 -1.4256 6.9825
25 7 3.3308 -0.2154 6.4137
26 1 3.5092 0.0191 5.4894
27 1 -0.3633 -1.0278 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5137 -0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5137 0.8900
32 1 1.5817 1.6877 -2.0284
33 1 2.0954 3.1411 -1.1384
34 1 4.3862 2.1344 -0.9130
35 1 4.9370 0.1741 -2.3285
36 1 3.6995 -0.2395 -1.1175
37 1 3.2289 0.0424 -2.8108
38 1 3.2234 3.5036 -4.5230
39 1 2.6228 0.4188 2.5299
40 1 0.9443 1.0114 2.5303
41 1 2.6392 3.5546 5.7907
42 1 2.1047 2.5715 8.0179
43 1 2.3227 0.2679 9.4893
44 1 3.2619 -2.1875 8.9960
45 1 3.9788 -2.2863 6.4794
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000782333043.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:35:19
Heat of formation + Delta-G solvation = -9.334250 kcal
Electronic energy + Delta-G solvation = -27303.431724 eV
Core-core repulsion = 23403.881017 eV
Total energy + Delta-G solvation = -3899.550707 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 321.165 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.48286 -41.57084 -40.77867 -38.44918 -37.53974 -36.72855 -34.93106 -33.62475
-31.94233 -31.47598 -30.66494 -29.25076 -27.31428 -25.51869 -24.53478 -24.29387
-22.20256 -21.35754 -20.89547 -20.69403 -20.02451 -19.38270 -18.46482 -18.07200
-17.88173 -17.68349 -17.02470 -16.61590 -15.92868 -15.49435 -15.38833 -15.24171
-15.12413 -15.06002 -14.88843 -14.59616 -14.41724 -14.30182 -14.12282 -13.75877
-13.70173 -13.57873 -13.24525 -13.16916 -12.99779 -12.94248 -12.66370 -12.37857
-12.30188 -12.18090 -11.96246 -11.71489 -11.63950 -11.39304 -10.93435 -10.79401
-10.14012 -9.83761 -9.57653 -8.60884 -0.71885 0.76618 1.00856 1.30755
1.35222 1.42587 1.51155 1.68181 1.81929 1.85406 2.20753 2.32035
2.42541 3.28529 3.46365 3.68145 3.88073 3.89967 3.90339 3.97712
4.00812 4.01615 4.15359 4.20117 4.24065 4.31916 4.36262 4.40139
4.51018 4.55484 4.62607 4.67683 4.71883 4.84725 4.87315 4.91894
4.99287 5.09349 5.13272 5.22135 5.26049 5.29209 5.36098 5.47722
5.91727 6.08651 6.21358 6.54431 6.75501 6.82110 7.07488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.093 3.907
3 N -0.609 5.609
4 C 0.135 3.865
5 C -0.080 4.080
6 C -0.146 4.146
7 C 0.004 3.996
8 N -0.631 5.631
9 Si 0.930 3.070
10 H -0.235 1.235
11 H -0.248 1.248
12 H -0.235 1.235
13 C 0.516 3.484
14 O -0.511 6.511
15 C 0.049 3.951
16 O -0.328 6.328
17 C 0.498 3.502
18 O -0.525 6.525
19 C -0.287 4.287
20 C 0.081 3.919
21 C -0.018 4.018
22 C -0.122 4.122
23 C -0.217 4.217
24 C 0.037 3.963
25 N -0.517 5.517
26 H 0.415 0.585
27 H 0.072 0.928
28 H 0.057 0.943
29 H 0.064 0.936
30 H 0.093 0.907
31 H 0.079 0.921
32 H 0.092 0.908
33 H 0.087 0.913
34 H 0.093 0.907
35 H 0.061 0.939
36 H 0.067 0.933
37 H 0.063 0.937
38 H 0.338 0.662
39 H 0.095 0.905
40 H 0.099 0.901
41 H 0.152 0.848
42 H 0.158 0.842
43 H 0.146 0.854
44 H 0.143 0.857
45 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.546 -3.829 -0.253 4.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.030 4.030
3 N -0.344 5.344
4 C 0.013 3.987
5 C -0.100 4.100
6 C -0.204 4.204
7 C -0.246 4.246
8 N -0.244 5.244
9 Si 0.745 3.255
10 H -0.158 1.158
11 H -0.171 1.171
12 H -0.157 1.157
13 C 0.302 3.698
14 O -0.386 6.386
15 C -0.029 4.029
16 O -0.243 6.243
17 C 0.350 3.650
18 O -0.419 6.419
19 C -0.307 4.307
20 C 0.062 3.938
21 C -0.128 4.128
22 C -0.148 4.148
23 C -0.241 4.241
24 C -0.101 4.101
25 N -0.113 5.113
26 H 0.257 0.743
27 H 0.091 0.909
28 H 0.076 0.924
29 H 0.083 0.917
30 H 0.111 0.889
31 H 0.097 0.903
32 H 0.111 0.889
33 H 0.106 0.894
34 H 0.111 0.889
35 H 0.080 0.920
36 H 0.085 0.915
37 H 0.082 0.918
38 H 0.155 0.845
39 H 0.113 0.887
40 H 0.117 0.883
41 H 0.170 0.830
42 H 0.176 0.824
43 H 0.164 0.836
44 H 0.160 0.840
45 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 1.478 -3.339 -0.636 3.706
hybrid contribution 0.273 0.135 -0.917 0.967
sum 1.751 -3.204 -1.553 3.968
Atomic orbital electron populations
1.22242 0.95276 1.02914 1.02915 1.21868 0.95074 0.82047 1.04000
1.47976 1.66107 1.14626 1.05685 1.21418 0.95141 0.98851 0.83329
1.20838 0.98789 0.95636 0.94741 1.21894 1.02546 0.93689 1.02274
1.30167 1.04364 0.94289 0.95732 1.68151 1.38156 1.10937 1.07138
0.85800 0.75560 0.82191 0.81906 1.15808 1.17060 1.15717 1.20047
0.78251 0.86799 0.84692 1.90769 1.43750 1.17138 1.86902 1.22359
1.03411 0.92741 0.84410 1.86323 1.78904 1.44673 1.14443 1.20103
0.75970 0.85701 0.83259 1.90942 1.44850 1.19533 1.86552 1.21060
1.17207 1.02571 0.89899 1.21036 0.84079 0.91338 0.97306 1.18291
1.11256 0.93304 0.89934 1.21653 1.02035 0.94086 0.96981 1.20941
1.08705 0.98554 0.95871 1.22241 1.04129 0.88835 0.94930 1.42591
1.46680 1.10101 1.11931 0.74328 0.90924 0.92440 0.91701 0.88925
0.90299 0.88948 0.89417 0.88912 0.92001 0.91460 0.91803 0.84475
0.88731 0.88343 0.83029 0.82415 0.83575 0.83955 0.81405
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 0.45 10.24 37.15 0.38 0.83 16
2 C 0.09 -0.27 5.00 -4.04 -0.02 -0.29 16
3 N -0.61 0.12 2.30 -173.69 -0.40 -0.28 16
4 C 0.13 0.05 4.28 -4.05 -0.02 0.03 16
5 C -0.08 0.04 2.52 -91.77 -0.23 -0.19 16
6 C -0.15 0.34 8.11 37.16 0.30 0.64 16
7 C 0.00 0.00 4.83 -13.90 -0.07 -0.07 16
8 N -0.63 -0.27 12.81 56.23 0.72 0.45 16
9 Si 0.93 -0.80 29.29 -169.99 -4.98 -5.77 16
10 H -0.24 0.18 7.11 56.52 0.40 0.58 16
11 H -0.25 0.05 7.11 56.52 0.40 0.46 16
12 H -0.23 -0.09 7.11 56.52 0.40 0.31 16
13 C 0.52 1.24 7.75 -10.98 -0.09 1.15 16
14 O -0.51 -3.34 16.08 -14.35 -0.23 -3.57 16
15 C 0.05 0.04 4.41 36.01 0.16 0.20 16
16 O -0.33 -1.08 9.64 -48.08 -0.46 -1.54 16
17 C 0.50 1.31 6.44 31.88 0.21 1.52 16
18 O -0.52 -1.98 12.51 -19.43 -0.24 -2.22 16
19 C -0.29 -0.25 9.86 -39.32 -0.39 -0.64 16
20 C 0.08 -0.01 9.76 -39.20 -0.38 -0.39 16
21 C -0.02 -0.03 5.94 -83.91 -0.50 -0.53 16
22 C -0.12 -0.13 10.86 -38.98 -0.42 -0.55 16
23 C -0.22 -0.20 10.81 -39.98 -0.43 -0.63 16
24 C 0.04 0.02 11.90 -16.80 -0.20 -0.18 16
25 N -0.52 -0.77 4.51 -10.57 -0.05 -0.82 16
26 H 0.42 0.44 6.15 -40.82 -0.25 0.19 16
27 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16
28 H 0.06 -0.09 7.22 -51.93 -0.38 -0.47 16
29 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16
30 H 0.09 -0.38 5.98 -51.93 -0.31 -0.69 16
31 H 0.08 -0.32 6.44 -51.93 -0.33 -0.66 16
32 H 0.09 -0.02 7.91 -51.93 -0.41 -0.43 16
33 H 0.09 0.24 7.42 -51.93 -0.39 -0.15 16
34 H 0.09 -0.01 7.85 -51.93 -0.41 -0.41 16
35 H 0.06 -0.16 7.94 -51.93 -0.41 -0.57 16
36 H 0.07 -0.21 5.89 -51.93 -0.31 -0.51 16
37 H 0.06 -0.14 8.14 -51.93 -0.42 -0.57 16
38 H 0.34 -0.28 8.23 -40.82 -0.34 -0.61 16
39 H 0.09 -0.12 7.39 -51.93 -0.38 -0.51 16
40 H 0.10 0.00 7.17 -51.93 -0.37 -0.37 16
41 H 0.15 -0.08 8.06 -52.49 -0.42 -0.50 16
42 H 0.16 -0.54 8.06 -52.49 -0.42 -0.96 16
43 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16
44 H 0.14 -0.10 8.06 -52.49 -0.42 -0.53 16
45 H 0.17 -0.40 8.06 -52.49 -0.42 -0.83 16
LS Contribution 371.49 15.07 5.60 5.60
Total: 0.00 -8.08 371.49 -8.21 -16.29
By element:
Atomic # 1 Polarization: -2.58 SS G_CDS: -6.46 Total: -9.04 kcal
Atomic # 6 Polarization: 2.61 SS G_CDS: -1.70 Total: 0.91 kcal
Atomic # 7 Polarization: -0.92 SS G_CDS: 0.27 Total: -0.64 kcal
Atomic # 8 Polarization: -6.39 SS G_CDS: -0.94 Total: -7.33 kcal
Atomic # 14 Polarization: -0.80 SS G_CDS: -4.98 Total: -5.77 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -8.08 -8.21 -16.29 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000782333043.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal
(2) G-P(sol) polarization free energy of solvation -8.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds