Wall clock time and date at job start Tue Mar 31 2020 12:35:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46508 * 109.46836 * 2 1
4 4 C 1.46494 * 119.99938 * 269.99408 * 3 2 1
5 5 C 1.52994 * 109.47426 * 270.00076 * 4 3 2
6 6 C 1.52998 * 109.46980 * 65.00409 * 5 4 3
7 7 C 1.50702 * 109.47169 * 185.00253 * 5 4 3
8 8 N 1.27948 * 119.99716 * 334.99782 * 7 5 4
9 9 Si 1.86800 * 120.00225 * 155.00169 * 7 5 4
10 10 H 1.48496 * 109.47028 * 59.99894 * 9 7 5
11 11 H 1.48500 * 109.47204 * 179.97438 * 9 7 5
12 12 H 1.48498 * 109.47072 * 299.99951 * 9 7 5
13 13 C 1.34782 * 119.99817 * 89.99892 * 3 2 1
14 14 O 1.21273 * 119.99787 * 179.97438 * 13 3 2
15 15 C 1.50699 * 120.00102 * 0.02562 * 13 3 2
16 16 O 1.42894 * 109.47071 * 180.02562 * 15 13 3
17 17 C 1.35000 * 116.99943 * 179.97438 * 16 15 13
18 18 O 1.21711 * 120.00149 * 359.97438 * 17 16 15
19 19 C 1.41261 * 119.99933 * 180.02562 * 17 16 15
20 20 C 1.35749 * 119.99663 * 188.38965 * 19 17 16
21 21 C 1.41589 * 120.00408 * 32.31606 * 20 19 17
22 22 C 1.38325 * 126.26393 * 187.22325 * 21 20 19
23 23 C 1.39765 * 107.07286 * 180.02562 * 22 21 20
24 24 C 1.35528 * 107.91463 * 359.76275 * 23 22 21
25 25 N 1.35727 * 108.91900 * 0.39196 * 24 23 22
26 26 H 0.97008 * 125.68746 * 179.86508 * 25 24 23
27 27 H 1.09007 * 109.46682 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47242 * 299.99871 * 1 2 3
29 29 H 1.08999 * 109.47128 * 60.00530 * 1 2 3
30 30 H 1.09004 * 109.47690 * 240.00056 * 2 1 3
31 31 H 1.08999 * 109.47128 * 119.99469 * 2 1 3
32 32 H 1.09005 * 109.47195 * 30.00667 * 4 3 2
33 33 H 1.09003 * 109.46825 * 150.00147 * 4 3 2
34 34 H 1.09001 * 109.47402 * 304.99956 * 5 4 3
35 35 H 1.09006 * 109.47043 * 179.97438 * 6 5 4
36 36 H 1.08998 * 109.47213 * 299.99658 * 6 5 4
37 37 H 1.08997 * 109.47707 * 59.99948 * 6 5 4
38 38 H 0.97002 * 119.99608 * 179.97438 * 8 7 5
39 39 H 1.09005 * 109.47284 * 59.99949 * 15 13 3
40 40 H 1.09001 * 109.47209 * 299.99819 * 15 13 3
41 41 H 1.07998 * 119.99961 * 8.38799 * 19 17 16
42 42 H 1.08002 * 119.99581 * 212.31403 * 20 19 17
43 43 H 1.08000 * 126.46863 * 0.02800 * 22 21 20
44 44 H 1.07997 * 126.04038 * 180.02562 * 23 22 21
45 45 H 1.07997 * 125.54314 * 180.23857 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2625 2.0719 -1.2687
5 6 3.7075 1.8315 -1.7103
6 6 3.9076 0.3453 -2.0134
7 6 3.9953 2.6401 -2.9490
8 7 3.0381 2.9828 -3.7259
9 14 5.7493 3.1418 -3.3504
10 1 6.5869 1.9264 -3.5126
11 1 5.7638 3.9245 -4.6123
12 1 6.2915 3.9728 -2.2456
13 6 2.2428 2.0167 1.1673
14 8 2.6474 3.1599 1.1673
15 6 1.9922 1.3060 2.4724
16 8 2.3010 2.1818 3.5585
17 6 2.1288 1.6953 4.8060
18 8 1.7267 0.5577 4.9654
19 6 2.4144 2.5070 5.9262
20 6 2.4064 1.9702 7.1730
21 6 2.7936 0.6220 7.3659
22 6 2.7022 -0.0948 8.5454
23 6 3.1936 -1.3771 8.2854
24 6 3.5636 -1.4256 6.9825
25 7 3.3308 -0.2154 6.4137
26 1 3.5092 0.0191 5.4894
27 1 -0.3633 -1.0278 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5137 -0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.8933 -0.5137 0.8900
32 1 1.5817 1.6877 -2.0284
33 1 2.0954 3.1411 -1.1384
34 1 4.3862 2.1344 -0.9130
35 1 4.9370 0.1741 -2.3285
36 1 3.6995 -0.2395 -1.1175
37 1 3.2289 0.0424 -2.8108
38 1 3.2234 3.5036 -4.5230
39 1 2.6228 0.4188 2.5299
40 1 0.9443 1.0114 2.5303
41 1 2.6392 3.5546 5.7907
42 1 2.1047 2.5715 8.0179
43 1 2.3227 0.2679 9.4893
44 1 3.2619 -2.1875 8.9960
45 1 3.9788 -2.2863 6.4794
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000782333043.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:35:18
Heat of formation + Delta-G solvation = -3.501695 kcal
Electronic energy + Delta-G solvation = -27303.178806 eV
Core-core repulsion = 23403.881017 eV
Total energy + Delta-G solvation = -3899.297788 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 321.165 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.53641 -41.66199 -40.87966 -38.51646 -37.67602 -36.77150 -34.94791 -33.58621
-31.96151 -31.40143 -30.72107 -29.27268 -27.27071 -25.53008 -24.54259 -24.18615
-22.25263 -21.36121 -20.94426 -20.71923 -20.05342 -19.44056 -18.55768 -18.11452
-17.93235 -17.77114 -17.07661 -16.67317 -15.97903 -15.52049 -15.37844 -15.22751
-15.14214 -14.96774 -14.86847 -14.59001 -14.41743 -14.28846 -14.09200 -13.82793
-13.63367 -13.60593 -13.20965 -13.15822 -12.98182 -12.83969 -12.54529 -12.36467
-12.25317 -12.08595 -11.94839 -11.81354 -11.74910 -11.38414 -11.01305 -10.89987
-10.16281 -9.86822 -9.60205 -8.63540 -0.73662 0.78422 1.03315 1.26220
1.32638 1.36846 1.39471 1.70883 1.82719 1.84445 2.17849 2.30923
2.42939 3.23780 3.51019 3.77028 3.88928 3.95432 3.99143 4.00117
4.03311 4.05586 4.26586 4.28619 4.35841 4.37611 4.43401 4.48465
4.56774 4.60861 4.74813 4.82565 4.84901 4.89512 4.91396 5.01672
5.03075 5.19453 5.19657 5.29282 5.29871 5.34458 5.35580 5.47223
5.91904 6.08092 6.16565 6.53142 6.64577 6.86182 6.94617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.088 3.912
3 N -0.599 5.599
4 C 0.138 3.862
5 C -0.081 4.081
6 C -0.143 4.143
7 C 0.002 3.998
8 N -0.648 5.648
9 Si 0.964 3.036
10 H -0.230 1.230
11 H -0.256 1.256
12 H -0.256 1.256
13 C 0.513 3.487
14 O -0.563 6.563
15 C 0.049 3.951
16 O -0.347 6.347
17 C 0.496 3.504
18 O -0.543 6.543
19 C -0.309 4.309
20 C 0.096 3.904
21 C -0.045 4.045
22 C -0.128 4.128
23 C -0.235 4.235
24 C 0.033 3.967
25 N -0.525 5.525
26 H 0.415 0.585
27 H 0.087 0.913
28 H 0.046 0.954
29 H 0.056 0.944
30 H 0.111 0.889
31 H 0.097 0.903
32 H 0.099 0.901
33 H 0.058 0.942
34 H 0.085 0.915
35 H 0.068 0.932
36 H 0.078 0.922
37 H 0.067 0.933
38 H 0.344 0.656
39 H 0.119 0.881
40 H 0.107 0.893
41 H 0.161 0.839
42 H 0.190 0.810
43 H 0.165 0.835
44 H 0.156 0.844
45 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.711 -5.448 0.099 5.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.033 4.033
3 N -0.332 5.332
4 C 0.015 3.985
5 C -0.102 4.102
6 C -0.201 4.201
7 C -0.246 4.246
8 N -0.261 5.261
9 Si 0.781 3.219
10 H -0.152 1.152
11 H -0.179 1.179
12 H -0.180 1.180
13 C 0.301 3.699
14 O -0.441 6.441
15 C -0.028 4.028
16 O -0.263 6.263
17 C 0.350 3.650
18 O -0.438 6.438
19 C -0.329 4.329
20 C 0.077 3.923
21 C -0.154 4.154
22 C -0.153 4.153
23 C -0.259 4.259
24 C -0.105 4.105
25 N -0.120 5.120
26 H 0.256 0.744
27 H 0.106 0.894
28 H 0.065 0.935
29 H 0.075 0.925
30 H 0.129 0.871
31 H 0.115 0.885
32 H 0.118 0.882
33 H 0.077 0.923
34 H 0.104 0.896
35 H 0.087 0.913
36 H 0.097 0.903
37 H 0.086 0.914
38 H 0.161 0.839
39 H 0.136 0.864
40 H 0.125 0.875
41 H 0.178 0.822
42 H 0.207 0.793
43 H 0.182 0.818
44 H 0.173 0.827
45 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges 1.624 -4.994 -0.306 5.260
hybrid contribution 0.199 0.584 -0.995 1.171
sum 1.823 -4.410 -1.301 4.946
Atomic orbital electron populations
1.22226 0.95386 1.03583 1.01978 1.22129 0.94938 0.80444 1.05789
1.48039 1.64880 1.15528 1.04786 1.21336 0.96152 0.97325 0.83654
1.20863 0.97751 0.97122 0.94448 1.21899 1.03175 0.92081 1.02957
1.30338 1.04781 0.93932 0.95595 1.68153 1.38667 1.11589 1.07712
0.85302 0.74599 0.81585 0.80383 1.15198 1.17887 1.18018 1.20382
0.77540 0.86263 0.85740 1.90741 1.46423 1.19309 1.87636 1.22482
1.04387 0.92875 0.83093 1.86315 1.79159 1.45689 1.15174 1.20359
0.75729 0.85647 0.83285 1.90916 1.46076 1.20173 1.86656 1.21185
1.19011 1.02920 0.89798 1.21449 0.81950 0.90966 0.97936 1.18701
1.12182 0.94190 0.90321 1.22025 1.01501 0.94213 0.97587 1.21268
1.09067 0.99081 0.96471 1.22762 1.03398 0.89231 0.95136 1.42721
1.46767 1.10511 1.12020 0.74393 0.89417 0.93512 0.92526 0.87128
0.88517 0.88231 0.92346 0.89637 0.91253 0.90336 0.91422 0.83912
0.86350 0.87521 0.82187 0.79262 0.81761 0.82680 0.78985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 0.96 10.24 71.98 0.74 1.70 16
2 C 0.09 -0.59 5.00 86.38 0.43 -0.16 16
3 N -0.60 -0.12 2.30 -821.82 -1.89 -2.01 16
4 C 0.14 0.27 4.28 86.38 0.37 0.64 16
5 C -0.08 0.04 2.52 -11.54 -0.03 0.01 16
6 C -0.14 0.78 8.11 71.98 0.58 1.37 16
7 C 0.00 0.00 4.83 88.67 0.43 0.43 16
8 N -0.65 -1.08 12.81 24.11 0.31 -0.77 16
9 Si 0.96 -1.21 29.29 68.60 2.01 0.80 16
10 H -0.23 0.50 7.11 99.48 0.71 1.21 16
11 H -0.26 0.02 7.11 99.48 0.71 0.72 16
12 H -0.26 -0.56 7.11 99.48 0.71 0.15 16
13 C 0.51 3.18 7.75 87.66 0.68 3.86 16
14 O -0.56 -8.82 16.08 16.03 0.26 -8.56 16
15 C 0.05 0.12 4.41 71.24 0.31 0.44 16
16 O -0.35 -2.77 9.64 -52.72 -0.51 -3.28 16
17 C 0.50 3.08 6.44 68.56 0.44 3.52 16
18 O -0.54 -4.39 12.51 19.15 0.24 -4.15 16
19 C -0.31 -0.73 9.86 22.44 0.22 -0.50 16
20 C 0.10 -0.05 9.76 22.52 0.22 0.17 16
21 C -0.04 -0.13 5.94 39.07 0.23 0.10 16
22 C -0.13 -0.19 10.86 22.66 0.25 0.05 16
23 C -0.24 -0.30 10.81 22.01 0.24 -0.07 16
24 C 0.03 0.02 11.90 83.46 0.99 1.01 16
25 N -0.52 -1.59 4.51 -187.35 -0.85 -2.44 16
26 H 0.41 1.08 6.15 -92.70 -0.57 0.51 16
27 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16
28 H 0.05 -0.14 7.22 -2.39 -0.02 -0.16 16
29 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16
30 H 0.11 -1.09 5.98 -2.38 -0.01 -1.11 16
31 H 0.10 -0.95 6.44 -2.39 -0.02 -0.96 16
32 H 0.10 0.03 7.91 -2.38 -0.02 0.01 16
33 H 0.06 0.47 7.42 -2.39 -0.02 0.46 16
34 H 0.09 0.10 7.85 -2.39 -0.02 0.08 16
35 H 0.07 -0.45 7.94 -2.38 -0.02 -0.47 16
36 H 0.08 -0.60 5.89 -2.39 -0.01 -0.62 16
37 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16
38 H 0.34 -0.29 8.23 -92.71 -0.76 -1.05 16
39 H 0.12 -0.34 7.39 -2.38 -0.02 -0.36 16
40 H 0.11 0.06 7.17 -2.39 -0.02 0.05 16
41 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16
42 H 0.19 -1.54 8.06 -2.91 -0.02 -1.57 16
43 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16
44 H 0.16 -0.34 8.06 -2.91 -0.02 -0.37 16
45 H 0.19 -1.12 8.06 -2.91 -0.02 -1.14 16
Total: 0.00 -20.58 371.49 6.12 -14.45
By element:
Atomic # 1 Polarization: -7.05 SS G_CDS: 0.44 Total: -6.61 kcal
Atomic # 6 Polarization: 6.46 SS G_CDS: 6.11 Total: 12.57 kcal
Atomic # 7 Polarization: -2.79 SS G_CDS: -2.42 Total: -5.22 kcal
Atomic # 8 Polarization: -15.98 SS G_CDS: -0.01 Total: -15.99 kcal
Atomic # 14 Polarization: -1.21 SS G_CDS: 2.01 Total: 0.80 kcal
Total: -20.58 6.12 -14.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000782333043.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.950 kcal
(2) G-P(sol) polarization free energy of solvation -20.576 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds