Wall clock time and date at job start Tue Mar 31 2020 12:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47135 * 2 1 4 4 C 1.35983 * 117.00434 * 179.97438 * 3 2 1 5 5 C 1.38719 * 120.06536 * 359.97438 * 4 3 2 6 6 C 1.37948 * 119.90239 * 179.89898 * 5 4 3 7 7 C 1.39124 * 120.29029 * 0.02562 * 6 5 4 8 8 C 1.38352 * 119.78402 * 0.13529 * 7 6 5 9 9 C 1.38495 * 119.88212 * 359.79534 * 8 7 6 10 10 C 1.50784 * 121.41284 * 179.75472 * 8 7 6 11 11 H 1.08996 * 109.39693 * 257.66973 * 10 8 7 12 12 N 1.46498 * 109.43421 * 137.77899 * 10 8 7 13 13 C 1.34775 * 120.00139 * 84.78169 * 12 10 8 14 14 O 1.21589 * 119.99889 * 359.97438 * 13 12 10 15 15 N 1.34776 * 120.00432 * 180.02562 * 13 12 10 16 16 C 1.46496 * 120.00006 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47106 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47288 * 59.99994 * 21 19 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46819 * 299.99648 * 21 19 17 25 25 C 1.53072 * 109.68810 * 17.71414 * 10 8 7 26 26 C 1.53405 * 108.28779 * 311.78713 * 25 10 8 27 27 O 1.35953 * 118.43235 * 180.18574 * 7 6 5 28 28 H 1.08999 * 109.47099 * 59.99950 * 1 2 3 29 29 H 1.09005 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47304 * 299.99974 * 1 2 3 31 31 H 1.08991 * 109.47076 * 240.00102 * 2 1 3 32 32 H 1.09000 * 109.47122 * 119.99494 * 2 1 3 33 33 H 1.08011 * 120.04932 * 359.87929 * 5 4 3 34 34 H 1.08001 * 119.85088 * 179.97438 * 6 5 4 35 35 H 1.08008 * 119.86201 * 180.15359 * 9 8 7 36 36 H 0.96998 * 120.00095 * 264.77276 * 12 10 8 37 37 H 0.96998 * 119.99803 * 359.97438 * 15 13 12 38 38 H 1.09001 * 109.47001 * 59.99676 * 16 15 13 39 39 H 1.09000 * 109.47574 * 299.99892 * 16 15 13 40 40 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.70066 * 71.49141 * 25 10 8 42 42 H 1.09002 * 109.69800 * 192.04998 * 25 10 8 43 43 H 1.09009 * 109.68436 * 184.48644 * 26 25 10 44 44 H 1.09006 * 109.68735 * 305.00643 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.2008 0.4264 0.0016 6 6 5.5678 0.6112 0.0000 7 6 6.1024 1.8956 -0.0021 8 6 5.2578 2.9915 0.0003 9 6 3.8855 2.8050 0.0004 10 6 5.7973 4.3995 0.0036 11 1 5.7216 4.8137 1.0089 12 7 5.0166 5.2228 -0.9230 13 6 3.8676 5.7950 -0.5120 14 8 3.4788 5.6275 0.6278 15 7 3.1491 6.5521 -1.3646 16 6 1.8999 7.1736 -0.9179 17 6 1.2967 7.9608 -2.0526 18 1 1.7939 7.9944 -3.0108 19 6 0.1101 8.6380 -1.8675 20 7 -0.4951 8.5975 -0.7005 21 14 -0.6380 9.6132 -3.2742 22 1 -0.9184 8.7030 -4.4135 23 1 -1.9042 10.2433 -2.8214 24 1 0.3137 10.6683 -3.7062 25 6 7.2639 4.3908 -0.4346 26 6 7.9974 3.3029 0.3603 27 8 7.4548 2.0339 -0.0074 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.7900 -0.5725 0.0040 34 1 6.2260 -0.2451 0.0013 35 1 3.2264 3.6607 -0.0003 36 1 5.3266 5.3563 -1.8324 37 1 3.4590 6.6855 -2.2740 38 1 2.1053 7.8416 -0.0815 39 1 1.2016 6.3989 -0.6011 40 1 -1.3301 9.0737 -0.5705 41 1 7.3276 4.1730 -1.5007 42 1 7.7141 5.3623 -0.2305 43 1 9.0612 3.3297 0.1240 44 1 7.8542 3.4687 1.4281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:35 Heat of formation + Delta-G solvation = -108.364679 kcal Electronic energy + Delta-G solvation = -27096.733666 eV Core-core repulsion = 23206.544417 eV Total energy + Delta-G solvation = -3890.189249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11423 -40.75835 -40.24575 -37.50105 -36.81239 -35.97115 -34.43953 -32.94543 -32.60875 -31.54761 -30.15563 -29.13310 -26.28913 -25.22629 -24.60237 -23.67906 -23.23216 -21.92024 -21.12324 -19.87934 -19.11799 -18.58240 -18.06224 -17.75565 -17.32101 -17.05289 -16.73096 -16.47055 -16.20774 -15.87471 -15.43864 -15.15971 -14.99014 -14.66825 -14.40012 -14.35464 -14.03907 -14.00933 -13.78126 -13.71675 -13.38143 -13.06576 -12.92847 -12.70433 -12.58542 -12.48837 -12.23757 -12.09476 -11.87430 -11.63327 -11.49940 -11.25770 -11.16886 -10.79181 -10.33388 -9.93574 -9.66487 -8.72871 -8.28471 -6.45392 0.16374 0.41725 1.42237 1.47214 1.55089 1.81292 2.19349 2.26346 2.38465 2.42338 2.71123 3.06221 3.45749 3.55869 3.63543 3.74916 3.89755 4.02775 4.06784 4.11335 4.18779 4.27296 4.34331 4.49141 4.55776 4.67714 4.69619 4.89038 4.91112 4.93699 4.99041 4.99227 5.09043 5.16758 5.25876 5.32716 5.35177 5.47337 5.49937 5.59518 5.65819 5.84285 6.22246 6.36595 6.56857 6.65827 7.23250 7.28412 7.69575 8.83753 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.003727 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.492734 B = 7510.705721 C = 9631.500708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.349 6.349 4 C 0.077 3.923 5 C -0.163 4.163 6 C -0.112 4.112 7 C 0.100 3.900 8 C -0.143 4.143 9 C -0.134 4.134 10 C 0.205 3.795 11 H 0.078 0.922 12 N -0.724 5.724 13 C 0.694 3.306 14 O -0.639 6.639 15 N -0.723 5.723 16 C 0.288 3.712 17 C -0.556 4.556 18 H 0.083 0.917 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.260 1.260 25 C -0.153 4.153 26 C 0.062 3.938 27 O -0.318 6.318 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.411 0.589 37 H 0.404 0.596 38 H -0.013 1.013 39 H -0.019 1.019 40 H 0.269 0.731 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.901 -18.195 -2.282 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.264 6.264 4 C 0.032 3.968 5 C -0.182 4.182 6 C -0.130 4.130 7 C 0.054 3.946 8 C -0.145 4.145 9 C -0.153 4.153 10 C 0.099 3.901 11 H 0.096 0.904 12 N -0.380 5.380 13 C 0.394 3.606 14 O -0.521 6.521 15 N -0.376 5.376 16 C 0.165 3.835 17 C -0.594 4.594 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.191 4.191 26 C -0.013 4.013 27 O -0.233 6.233 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.122 0.878 36 H 0.248 0.752 37 H 0.239 0.761 38 H 0.005 0.995 39 H -0.001 1.001 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.168 0.832 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.361 -18.244 -1.204 24.535 hybrid contribution -1.003 0.997 -0.780 1.615 sum 15.358 -17.247 -1.984 23.179 Atomic orbital electron populations 1.21837 0.92289 1.04277 1.02575 1.23078 0.96514 0.80642 1.02603 1.86146 1.19301 1.31734 1.89245 1.19052 0.83009 0.94268 1.00428 1.21293 0.93128 0.98406 1.05362 1.20677 0.94467 0.95506 1.02381 1.18622 0.82802 0.92921 1.00254 1.20146 0.92399 0.96181 1.05791 1.20557 0.95387 0.95714 1.03612 1.19620 0.91124 0.85212 0.94149 0.90450 1.44922 1.23033 1.53627 1.16432 1.16271 0.80966 0.78845 0.84541 1.90855 1.72589 1.68053 1.20634 1.45308 1.25163 1.52379 1.14765 1.18375 0.79725 0.90530 0.94874 1.21561 1.08109 1.31503 0.98228 0.89879 1.26073 0.97011 0.97406 0.99039 1.70151 1.18207 1.43171 1.25391 0.85188 0.77450 0.78475 0.77964 1.18797 1.20986 1.18479 1.22506 0.91203 1.02720 1.02670 1.23249 0.99722 0.79307 0.99013 1.85985 1.16553 1.36323 1.84411 0.92734 0.87156 0.92771 0.90413 0.90521 0.81946 0.81897 0.87760 0.75192 0.76095 0.99549 1.00136 0.92240 0.88619 0.86687 0.83216 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 10.28 71.98 0.74 -2.33 16 2 C 0.05 1.01 5.46 71.98 0.39 1.41 16 3 O -0.35 -11.99 10.14 -93.36 -0.95 -12.94 16 4 C 0.08 2.56 6.68 22.45 0.15 2.71 16 5 C -0.16 -3.94 9.03 22.32 0.20 -3.74 16 6 C -0.11 -2.50 9.93 22.41 0.22 -2.27 16 7 C 0.10 2.52 6.47 22.51 0.15 2.67 16 8 C -0.14 -4.39 5.56 -19.75 -0.11 -4.50 16 9 C -0.13 -5.07 9.01 22.40 0.20 -4.87 16 10 C 0.20 5.66 2.70 44.30 0.12 5.78 16 11 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 12 N -0.72 -22.35 4.87 -461.18 -2.24 -24.60 16 13 C 0.69 30.21 7.13 179.05 1.28 31.49 16 14 O -0.64 -34.07 14.25 -4.00 -0.06 -34.13 16 15 N -0.72 -32.64 5.55 -482.30 -2.68 -35.32 16 16 C 0.29 16.60 5.43 85.64 0.46 17.07 16 17 C -0.56 -31.21 9.28 25.60 0.24 -30.98 16 18 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 21 Si 0.99 43.17 29.54 68.60 2.03 45.20 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C -0.15 -2.46 5.67 30.75 0.17 -2.29 16 26 C 0.06 0.87 7.03 72.12 0.51 1.37 16 27 O -0.32 -6.46 10.27 -93.02 -0.96 -7.42 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 32 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 33 H 0.16 2.74 6.31 -2.90 -0.02 2.72 16 34 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.10 4.95 4.67 -2.91 -0.01 4.94 16 36 H 0.41 9.69 8.59 -92.71 -0.80 8.90 16 37 H 0.40 15.10 8.34 -92.71 -0.77 14.33 16 38 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.10 1.37 8.11 -2.39 -0.02 1.35 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.15 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -82.39 362.35 0.09 -82.30 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.53 Total: 31.95 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.19 Total: 12.24 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.64 Total: -117.20 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -1.96 Total: -54.48 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -82.39 0.09 -82.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.063 kcal (2) G-P(sol) polarization free energy of solvation -82.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds