Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47034 * 2 1 4 4 C 1.46501 * 119.99840 * 270.00025 * 3 2 1 5 5 C 1.50696 * 109.47155 * 269.99733 * 4 3 2 6 6 H 1.08007 * 119.99880 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00113 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00264 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46790 * 60.00184 * 9 7 5 11 11 H 1.48494 * 109.47624 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47328 * 300.00544 * 9 7 5 13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1 14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99962 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34682 * 116.99919 * 180.02562 * 16 15 13 18 18 O 1.21433 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.48065 * 120.00131 * 180.26979 * 17 16 15 20 20 C 1.39345 * 119.72995 * 179.71944 * 19 17 16 21 21 C 1.38587 * 119.06116 * 179.97438 * 20 19 17 22 22 C 1.50697 * 120.75719 * 179.97438 * 21 20 19 23 23 C 1.38624 * 118.48951 * 0.02562 * 21 20 19 24 24 C 1.38592 * 119.35566 * 359.97438 * 23 21 20 25 25 C 1.50701 * 119.54369 * 180.02562 * 24 23 21 26 26 N 1.31498 * 120.90526 * 359.73807 * 24 23 21 27 27 H 1.08999 * 109.46842 * 299.99969 * 1 2 3 28 28 H 1.09008 * 109.47077 * 60.00121 * 1 2 3 29 29 H 1.09006 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46842 * 240.00031 * 2 1 3 31 31 H 1.08996 * 109.46757 * 120.00066 * 2 1 3 32 32 H 1.08999 * 109.47410 * 30.00578 * 4 3 2 33 33 H 1.09008 * 109.46780 * 150.00292 * 4 3 2 34 34 H 0.97004 * 120.00452 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47259 * 59.99638 * 15 13 3 36 36 H 1.09004 * 109.46840 * 299.99418 * 15 13 3 37 37 H 1.08007 * 120.46987 * 0.02562 * 20 19 17 38 38 H 1.08994 * 109.47267 * 90.00077 * 22 21 20 39 39 H 1.09006 * 109.46868 * 209.99663 * 22 21 20 40 40 H 1.08994 * 109.46974 * 329.99493 * 22 21 20 41 41 H 1.08000 * 120.32527 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.47121 * 90.00310 * 25 24 23 43 43 H 1.08997 * 109.46772 * 209.99648 * 25 24 23 44 44 H 1.09000 * 109.47186 * 330.00216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.1401 0.6388 -3.5948 11 1 6.1606 2.7957 -4.7036 12 1 6.8410 2.6190 -2.3830 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3059 2.4723 16 8 2.3061 2.1958 3.5759 17 6 2.1354 1.7101 4.8204 18 8 1.7350 0.5748 4.9795 19 6 2.4297 2.5627 5.9947 20 6 2.2455 2.0564 7.2798 21 6 2.5257 2.8663 8.3689 22 6 2.3396 2.3580 9.7753 23 6 2.9801 4.1549 8.1352 24 6 3.1403 4.5926 6.8300 25 6 3.6345 5.9925 6.5711 26 7 2.8722 3.8012 5.8146 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 3.6748 3.5156 -4.4445 35 1 2.6228 0.4186 2.5298 36 1 0.9444 1.0114 2.5302 37 1 1.8901 1.0469 7.4250 38 1 3.2638 1.8938 10.1192 39 1 2.0850 3.1903 10.4317 40 1 1.5353 1.6226 9.7924 41 1 3.2071 4.8114 8.9621 42 1 4.7230 5.9886 6.5130 43 1 3.2219 6.3551 5.6296 44 1 3.3163 6.6462 7.3831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801448459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = -86.745307 kcal Electronic energy + Delta-G solvation = -26265.058871 eV Core-core repulsion = 22375.807108 eV Total energy + Delta-G solvation = -3889.251763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08111 -39.99571 -38.82731 -36.40857 -35.25390 -34.58310 -33.15435 -32.80356 -30.14811 -29.22287 -28.43295 -27.84113 -26.66176 -24.99618 -23.04687 -22.54170 -21.59725 -20.98140 -18.67588 -18.19475 -17.00950 -16.67325 -16.55224 -16.37814 -16.32208 -15.85513 -15.31491 -15.03055 -14.39471 -14.38310 -14.07807 -13.70961 -13.46089 -13.34003 -13.21355 -12.99810 -12.93868 -12.65248 -12.40795 -12.38105 -12.07477 -12.02272 -12.00279 -11.59962 -11.20290 -10.94666 -10.90815 -10.84045 -10.56804 -10.49016 -10.11980 -9.90057 -9.79921 -9.64653 -9.34498 -8.93733 -8.41592 -7.71131 -6.02837 -4.07582 0.24518 0.85679 2.23799 2.33766 3.30078 3.34180 3.38311 3.42709 3.48584 3.69285 3.98023 4.18190 4.41958 4.48161 4.58476 4.63519 4.90647 4.91636 5.01952 5.08718 5.16866 5.22401 5.24095 5.29282 5.31699 5.39357 5.40761 5.43712 5.61556 5.65838 5.75995 5.81255 5.85876 6.01784 6.21562 6.22981 6.29370 6.47363 7.02751 7.39782 7.43695 7.52015 7.76453 7.93292 8.23696 8.33826 8.88682 9.03686 9.57230 11.05304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002796 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.232404 B =10012.416161 C =11096.748747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.513 6.513 15 C 0.046 3.954 16 O -0.302 6.302 17 C 0.522 3.478 18 O -0.503 6.503 19 C 0.106 3.894 20 C -0.116 4.116 21 C -0.050 4.050 22 C -0.115 4.115 23 C -0.145 4.145 24 C 0.131 3.869 25 C -0.106 4.106 26 N -0.432 5.432 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -2.477 25.332 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.388 6.388 15 C -0.031 4.031 16 O -0.215 6.215 17 C 0.365 3.635 18 O -0.391 6.391 19 C -0.031 4.031 20 C -0.136 4.136 21 C -0.058 4.058 22 C -0.171 4.171 23 C -0.165 4.165 24 C -0.010 4.010 25 C -0.164 4.164 26 N -0.144 5.144 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.168 0.832 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.160 0.840 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.181 -1.805 24.255 24.679 hybrid contribution 0.789 -0.768 0.330 1.150 sum -3.392 -2.574 24.585 24.951 Atomic orbital electron populations 1.22240 0.96573 1.01649 1.02423 1.21503 0.93732 0.84007 1.02994 1.48201 1.64029 1.13388 1.07091 1.19319 0.96417 0.93729 0.77546 1.21395 0.96881 1.32088 1.06321 0.92458 1.24927 0.97886 0.94875 0.96361 1.69921 1.35750 1.33347 1.14337 0.86549 0.84777 0.78226 0.77814 1.20258 1.21174 1.20136 1.19659 0.79840 0.87192 0.84200 1.90738 1.44102 1.17370 1.86623 1.23066 1.02763 0.92731 0.84574 1.86753 1.77495 1.43785 1.13437 1.20841 0.74358 0.84859 0.83466 1.90832 1.42772 1.18673 1.86850 1.19972 1.01009 0.91525 0.90565 1.21947 0.99216 1.01578 0.90870 1.20305 0.95683 0.93476 0.96298 1.20831 1.03130 1.02074 0.91110 1.22189 0.99843 0.96270 0.98193 1.21453 0.94771 0.96634 0.88114 1.20777 1.02034 0.89597 1.03960 1.67584 1.08246 1.03111 1.35472 0.93132 0.91789 0.91923 0.89432 0.91779 0.94641 0.93700 0.92638 0.88532 0.88619 0.83202 0.90164 0.90668 0.90617 0.84007 0.89915 0.89628 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 11.22 7.75 -10.99 -0.09 11.14 16 14 O -0.51 -13.85 16.08 -14.11 -0.23 -14.08 16 15 C 0.05 0.80 4.51 36.01 0.16 0.96 16 16 O -0.30 -5.69 9.57 -47.12 -0.45 -6.14 16 17 C 0.52 8.52 7.95 34.76 0.28 8.79 16 18 O -0.50 -8.18 16.11 -19.21 -0.31 -8.49 16 19 C 0.11 1.52 6.75 -83.03 -0.56 0.96 16 20 C -0.12 -1.25 9.34 -39.04 -0.36 -1.61 16 21 C -0.05 -0.41 5.91 -104.35 -0.62 -1.03 16 22 C -0.11 -0.55 10.06 36.00 0.36 -0.18 16 23 C -0.15 -1.19 9.45 -39.31 -0.37 -1.56 16 24 C 0.13 1.45 6.78 -82.60 -0.56 0.89 16 25 C -0.11 -0.90 10.17 36.01 0.37 -0.53 16 26 N -0.43 -6.43 10.03 -6.07 -0.06 -6.50 16 27 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 28 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 31 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.34 7.42 -51.92 -0.39 0.95 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.10 1.49 7.40 -51.93 -0.38 1.11 16 36 H 0.10 1.43 7.18 -51.93 -0.37 1.05 16 37 H 0.15 1.41 7.64 -52.48 -0.40 1.01 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 40 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -36.42 381.85 -7.92 -44.34 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.43 Total: -2.98 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.48 Total: 10.25 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.25 Total: -45.75 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.99 Total: -28.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.42 -7.92 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801448459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.401 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds