Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47034 * 2 1 4 4 C 1.46501 * 119.99840 * 270.00025 * 3 2 1 5 5 C 1.50696 * 109.47155 * 269.99733 * 4 3 2 6 6 H 1.08007 * 119.99880 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00113 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00264 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46790 * 60.00184 * 9 7 5 11 11 H 1.48494 * 109.47624 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47328 * 300.00544 * 9 7 5 13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1 14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99962 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34682 * 116.99919 * 180.02562 * 16 15 13 18 18 O 1.21433 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.48065 * 120.00131 * 180.26979 * 17 16 15 20 20 C 1.39345 * 119.72995 * 179.71944 * 19 17 16 21 21 C 1.38587 * 119.06116 * 179.97438 * 20 19 17 22 22 C 1.50697 * 120.75719 * 179.97438 * 21 20 19 23 23 C 1.38624 * 118.48951 * 0.02562 * 21 20 19 24 24 C 1.38592 * 119.35566 * 359.97438 * 23 21 20 25 25 C 1.50701 * 119.54369 * 180.02562 * 24 23 21 26 26 N 1.31498 * 120.90526 * 359.73807 * 24 23 21 27 27 H 1.08999 * 109.46842 * 299.99969 * 1 2 3 28 28 H 1.09008 * 109.47077 * 60.00121 * 1 2 3 29 29 H 1.09006 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46842 * 240.00031 * 2 1 3 31 31 H 1.08996 * 109.46757 * 120.00066 * 2 1 3 32 32 H 1.08999 * 109.47410 * 30.00578 * 4 3 2 33 33 H 1.09008 * 109.46780 * 150.00292 * 4 3 2 34 34 H 0.97004 * 120.00452 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47259 * 59.99638 * 15 13 3 36 36 H 1.09004 * 109.46840 * 299.99418 * 15 13 3 37 37 H 1.08007 * 120.46987 * 0.02562 * 20 19 17 38 38 H 1.08994 * 109.47267 * 90.00077 * 22 21 20 39 39 H 1.09006 * 109.46868 * 209.99663 * 22 21 20 40 40 H 1.08994 * 109.46974 * 329.99493 * 22 21 20 41 41 H 1.08000 * 120.32527 * 179.97438 * 23 21 20 42 42 H 1.09000 * 109.47121 * 90.00310 * 25 24 23 43 43 H 1.08997 * 109.46772 * 209.99648 * 25 24 23 44 44 H 1.09000 * 109.47186 * 330.00216 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.1401 0.6388 -3.5948 11 1 6.1606 2.7957 -4.7036 12 1 6.8410 2.6190 -2.3830 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3059 2.4723 16 8 2.3061 2.1958 3.5759 17 6 2.1354 1.7101 4.8204 18 8 1.7350 0.5748 4.9795 19 6 2.4297 2.5627 5.9947 20 6 2.2455 2.0564 7.2798 21 6 2.5257 2.8663 8.3689 22 6 2.3396 2.3580 9.7753 23 6 2.9801 4.1549 8.1352 24 6 3.1403 4.5926 6.8300 25 6 3.6345 5.9925 6.5711 26 7 2.8722 3.8012 5.8146 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 3.6748 3.5156 -4.4445 35 1 2.6228 0.4186 2.5298 36 1 0.9444 1.0114 2.5302 37 1 1.8901 1.0469 7.4250 38 1 3.2638 1.8938 10.1192 39 1 2.0850 3.1903 10.4317 40 1 1.5353 1.6226 9.7924 41 1 3.2071 4.8114 8.9621 42 1 4.7230 5.9886 6.5130 43 1 3.2219 6.3551 5.6296 44 1 3.3163 6.6462 7.3831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801448459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = -109.702065 kcal Electronic energy + Delta-G solvation = -26266.054351 eV Core-core repulsion = 22375.807108 eV Total energy + Delta-G solvation = -3890.247243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12757 -41.17918 -40.41984 -37.74914 -37.00653 -35.26456 -34.95140 -33.96322 -31.76572 -30.74779 -29.15992 -28.61356 -28.30092 -26.12720 -24.80552 -24.11460 -22.39523 -22.03787 -20.32130 -19.34260 -18.67008 -18.26697 -17.90757 -17.74184 -17.33310 -17.04688 -16.88964 -16.34775 -16.09370 -15.58114 -15.08270 -14.80532 -14.70441 -14.53873 -14.13773 -13.98268 -13.92852 -13.81280 -13.62687 -13.41874 -13.30111 -13.14559 -13.12403 -13.08550 -12.67792 -12.63361 -12.53592 -12.24448 -12.09534 -12.08586 -11.83685 -11.75278 -10.78829 -10.65630 -10.63277 -10.58098 -10.14867 -9.56804 -8.24233 -6.38896 -0.64185 0.11584 1.09444 1.16853 1.35598 1.40521 1.47419 1.59067 2.24272 2.40336 2.62140 2.96135 3.05656 3.39214 3.52142 3.60178 3.81750 3.85082 3.91588 3.94299 4.12735 4.25720 4.36441 4.43616 4.57067 4.57480 4.68351 4.76430 4.83070 4.84098 4.92771 4.93199 4.99634 5.02161 5.10784 5.18126 5.22746 5.25886 5.34766 5.52496 5.59352 5.78122 6.02850 6.27688 6.58484 6.69602 6.83114 7.19363 7.34956 8.83207 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002796 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.232404 B =10012.416161 C =11096.748747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.058 3.942 16 O -0.332 6.332 17 C 0.521 3.479 18 O -0.509 6.509 19 C 0.069 3.931 20 C -0.112 4.112 21 C -0.045 4.045 22 C -0.112 4.112 23 C -0.127 4.127 24 C 0.112 3.888 25 C -0.105 4.105 26 N -0.483 5.483 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.032 0.968 33 H -0.002 1.002 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.185 0.815 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -4.013 28.481 29.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.019 4.019 16 O -0.246 6.246 17 C 0.365 3.635 18 O -0.397 6.397 19 C -0.066 4.066 20 C -0.132 4.132 21 C -0.053 4.053 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.029 4.029 25 C -0.162 4.162 26 N -0.196 5.196 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.178 0.822 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.202 0.798 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.818 -3.413 27.414 27.888 hybrid contribution 0.631 -0.250 -0.545 0.871 sum -3.187 -3.662 26.869 27.304 Atomic orbital electron populations 1.22183 0.94265 1.03860 1.01811 1.21886 0.95620 0.80883 1.04471 1.48207 1.63631 1.15311 1.05546 1.18794 0.95671 0.91596 0.79698 1.21668 0.97804 1.32353 1.06668 0.92825 1.25859 1.02480 0.94380 0.96361 1.70041 1.37841 1.34006 1.14771 0.85462 0.78861 0.79113 0.77341 1.18297 1.20159 1.20522 1.20496 0.78438 0.86648 0.85819 1.90697 1.46990 1.20230 1.87700 1.22950 1.04938 0.92063 0.81914 1.86750 1.78257 1.44922 1.14674 1.21312 0.73879 0.85263 0.83048 1.90794 1.43343 1.18830 1.86779 1.19943 1.03980 0.91873 0.90772 1.22157 0.98582 1.02326 0.90169 1.20788 0.93984 0.93104 0.97380 1.20943 1.04080 1.03120 0.88682 1.22628 0.97308 0.96689 0.97968 1.21973 0.94935 0.97122 0.88882 1.20863 1.02245 0.88997 1.04110 1.67458 1.10168 1.04069 1.37938 0.92543 0.93658 0.88200 0.89826 0.88408 0.95051 0.98423 0.92302 0.86118 0.85690 0.82200 0.88823 0.88482 0.89941 0.79754 0.89350 0.92114 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.09 2.93 5.93 86.38 0.51 3.44 16 3 N -0.59 -26.42 2.46 -826.15 -2.03 -28.45 16 4 C 0.26 14.63 5.16 85.63 0.44 15.07 16 5 C -0.55 -32.32 9.39 25.60 0.24 -32.08 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.49 5.46 84.65 0.46 0.96 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.50 22.97 7.75 87.66 0.68 23.65 16 14 O -0.58 -33.26 16.08 15.75 0.25 -33.01 16 15 C 0.06 2.02 4.51 71.24 0.32 2.34 16 16 O -0.33 -12.98 9.57 -49.53 -0.47 -13.46 16 17 C 0.52 17.34 7.95 70.43 0.56 17.90 16 18 O -0.51 -16.30 16.11 20.05 0.32 -15.98 16 19 C 0.07 2.02 6.75 41.88 0.28 2.30 16 20 C -0.11 -2.28 9.34 22.62 0.21 -2.07 16 21 C -0.04 -0.61 5.91 -19.69 -0.12 -0.73 16 22 C -0.11 -0.59 10.06 71.24 0.72 0.13 16 23 C -0.13 -1.70 9.45 22.45 0.21 -1.49 16 24 C 0.11 2.40 6.78 42.69 0.29 2.68 16 25 C -0.11 -1.70 10.17 71.24 0.72 -0.98 16 26 N -0.48 -14.92 10.03 -173.12 -1.74 -16.66 16 27 H 0.06 1.38 7.22 -2.39 -0.02 1.37 16 28 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.10 2.43 6.44 -2.39 -0.02 2.41 16 32 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 33 H 0.00 -0.15 7.42 -2.38 -0.02 -0.17 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.12 3.58 7.40 -2.39 -0.02 3.56 16 36 H 0.13 3.57 7.18 -2.38 -0.02 3.55 16 37 H 0.16 2.79 7.64 -2.91 -0.02 2.76 16 38 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.10 0.15 8.10 -2.38 -0.02 0.13 16 40 H 0.08 0.38 8.10 -2.39 -0.02 0.36 16 41 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 0.95 8.08 -2.39 -0.02 0.93 16 Total: -1.00 -86.02 381.85 5.93 -80.10 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.00 Total: 8.65 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 6.27 Total: 27.68 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -3.48 Total: -101.88 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: 0.10 Total: -62.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -86.02 5.93 -80.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801448459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.604 kcal (2) G-P(sol) polarization free energy of solvation -86.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds