Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46990 * 2 1 4 4 O 1.45198 * 109.46946 * 119.99695 * 2 1 3 5 5 C 1.34230 * 117.00173 * 270.00291 * 4 2 1 6 6 O 1.20818 * 119.99983 * 0.27497 * 5 4 2 7 7 C 1.50706 * 119.99763 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.46573 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46691 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99592 * 13 11 9 16 16 H 1.48497 * 109.47025 * 239.99950 * 13 11 9 17 17 C 1.50697 * 109.47449 * 239.99861 * 2 1 3 18 18 O 1.21281 * 120.00134 * 245.00298 * 17 2 1 19 19 N 1.34781 * 119.99924 * 64.99568 * 17 2 1 20 20 C 1.46500 * 120.00010 * 179.97438 * 19 17 2 21 21 C 1.52993 * 109.47080 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.47342 * 180.02562 * 21 20 19 23 23 C 1.38654 * 120.79015 * 269.72465 * 22 21 20 24 24 C 1.38206 * 119.16113 * 179.79458 * 23 22 21 25 25 N 1.31866 * 120.76213 * 0.48621 * 24 23 22 26 26 C 1.31872 * 121.72762 * 359.74405 * 25 24 23 27 27 C 1.38196 * 120.76460 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47362 * 300.00397 * 1 2 3 29 29 H 1.08999 * 109.47111 * 60.00118 * 1 2 3 30 30 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47161 * 299.99883 * 7 5 4 32 32 H 1.09001 * 109.46740 * 60.00026 * 7 5 4 33 33 H 1.09000 * 109.47486 * 299.99934 * 8 7 5 34 34 H 1.09001 * 109.47362 * 60.00657 * 8 7 5 35 35 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 36 36 H 0.97002 * 119.99666 * 0.02562 * 19 17 2 37 37 H 1.08994 * 109.47511 * 300.00921 * 20 19 17 38 38 H 1.09004 * 109.46734 * 60.00707 * 20 19 17 39 39 H 1.08994 * 109.47521 * 300.00695 * 21 20 19 40 40 H 1.09004 * 109.46939 * 60.00612 * 21 20 19 41 41 H 1.08004 * 120.41810 * 0.02562 * 23 22 21 42 42 H 1.07998 * 119.61778 * 180.20808 * 24 23 22 43 43 H 1.07999 * 119.61586 * 179.97438 * 26 25 24 44 44 H 1.08002 * 120.42145 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9930 1.2509 2.2519 7 6 2.7181 -0.5772 3.5496 8 6 2.8634 0.4891 4.6371 9 6 3.3638 -0.1522 5.9058 10 1 3.5592 -1.2140 5.9334 11 6 3.5723 0.6166 7.0311 12 7 3.3349 1.9097 6.9973 13 14 4.1920 -0.1784 8.6038 14 1 4.3804 -1.6345 8.3813 15 1 5.4880 0.4345 8.9909 16 1 3.2007 0.0328 9.6891 17 6 2.0324 -0.7104 -1.2304 18 8 2.6531 -1.7467 -1.1214 19 7 1.7919 -0.1942 -2.4520 20 6 2.2808 -0.8845 -3.6481 21 6 1.8765 -0.0942 -4.8941 22 6 2.3788 -0.8046 -6.1246 23 6 3.6310 -0.5195 -6.6473 24 6 4.0597 -1.1942 -7.7747 25 7 3.2894 -2.0922 -8.3570 26 6 2.0913 -2.3853 -7.8905 27 6 1.5975 -1.7546 -6.7644 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0086 -1.3369 3.8775 32 1 3.6870 -1.0408 3.3640 33 1 3.5731 1.2485 4.3090 34 1 1.8947 0.9531 4.8227 35 1 3.4819 2.4507 7.7889 36 1 1.2958 0.6347 -2.5391 37 1 3.3671 -0.9624 -3.6043 38 1 1.8466 -1.8833 -3.6941 39 1 0.7902 -0.0160 -4.9382 40 1 2.3111 0.9044 -4.8479 41 1 4.2649 0.2179 -6.1771 42 1 5.0352 -0.9804 -8.1860 43 1 1.4888 -3.1263 -8.3947 44 1 0.6153 -1.9987 -6.3873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813098169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -129.556388 kcal Electronic energy + Delta-G solvation = -25091.346772 eV Core-core repulsion = 21200.238581 eV Total energy + Delta-G solvation = -3891.108191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90145 -41.14091 -40.57670 -37.75693 -36.84979 -35.65707 -34.70941 -33.42261 -32.69410 -32.10614 -30.09952 -28.11249 -26.26208 -24.99613 -24.38902 -23.81217 -22.51256 -21.74211 -21.30364 -19.23170 -18.70116 -18.24470 -17.62623 -17.49084 -17.38921 -17.00144 -16.52396 -16.48223 -16.46867 -16.28130 -15.34020 -15.19819 -14.76445 -14.67753 -14.43719 -14.36950 -14.27953 -13.82392 -13.59011 -13.41783 -13.24612 -13.16449 -12.87120 -12.84164 -12.71748 -12.49383 -12.13263 -12.03968 -11.94120 -11.75353 -11.49550 -11.27547 -10.98673 -10.58328 -10.53230 -10.42126 -10.28327 -10.06679 -8.20371 -6.33565 0.21933 0.25581 1.13949 1.29180 1.36393 1.44070 1.44367 1.58148 2.21796 2.43963 2.86725 3.13593 3.42541 3.61429 3.71345 3.76922 3.80050 3.85902 3.89655 3.96591 4.19107 4.20467 4.27343 4.39575 4.42574 4.51143 4.60303 4.63192 4.75357 4.78270 4.89316 4.93683 4.95827 5.05516 5.08316 5.23539 5.29938 5.40737 5.46888 5.55155 5.80320 5.80343 6.13337 6.32081 6.73170 6.84647 7.03288 7.05047 7.36466 8.92282 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.001693 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.111068 B =16537.232810 C =16815.265109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.055 3.945 3 H 0.113 0.887 4 O -0.343 6.343 5 C 0.469 3.531 6 O -0.532 6.532 7 C -0.096 4.096 8 C 0.040 3.960 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.257 1.257 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.523 3.477 18 O -0.563 6.563 19 N -0.705 5.705 20 C 0.128 3.872 21 C -0.082 4.082 22 C -0.045 4.045 23 C -0.172 4.172 24 C 0.083 3.917 25 N -0.522 5.522 26 C 0.083 3.917 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.110 0.890 33 H -0.008 1.008 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.422 0.578 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -4.089 -30.687 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.003 4.003 3 H 0.131 0.869 4 O -0.259 6.259 5 C 0.314 3.686 6 O -0.421 6.421 7 C -0.134 4.134 8 C 0.003 3.997 9 C -0.583 4.583 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.180 1.180 15 H -0.206 1.206 16 H -0.204 1.204 17 C 0.308 3.692 18 O -0.441 6.441 19 N -0.360 5.360 20 C 0.005 3.995 21 C -0.119 4.119 22 C -0.054 4.054 23 C -0.191 4.191 24 C -0.073 4.073 25 N -0.231 5.231 26 C -0.073 4.073 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.171 0.829 42 H 0.187 0.813 43 H 0.189 0.811 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.176 -4.760 -31.321 32.278 hybrid contribution -0.042 0.892 1.536 1.777 sum -6.218 -3.868 -29.785 30.672 Atomic orbital electron populations 1.22168 0.89473 1.04396 1.05447 1.22730 0.97966 0.97597 0.81990 0.86901 1.86670 1.77264 1.42033 1.19961 1.24502 0.73005 0.85742 0.85381 1.90604 1.49160 1.18006 1.84373 1.21539 1.03647 1.00598 0.87568 1.18803 0.95786 0.93041 0.92099 1.21668 1.44662 0.95623 0.96355 0.90752 1.26048 0.95544 0.95299 1.03064 1.70148 1.49722 1.06794 1.30644 0.85283 0.77729 0.79133 0.78177 1.18014 1.20595 1.20435 1.20222 0.79164 0.84758 0.85040 1.90743 1.41198 1.25062 1.87068 1.45632 1.57838 1.28481 1.04043 1.21315 0.99303 0.96250 0.82674 1.20769 1.03827 0.99087 0.88209 1.20297 0.93990 0.95243 0.95855 1.22369 0.96964 1.02014 0.97776 1.23135 0.99724 0.91554 0.92934 1.67678 1.06556 1.15974 1.32939 1.23175 0.91955 0.98135 0.94059 1.22372 1.02355 0.97130 0.96935 0.91667 0.86254 0.90847 0.86647 0.87223 0.98935 0.98591 0.92711 0.74012 0.92476 0.91752 0.87280 0.87876 0.82914 0.81320 0.81100 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.50 71.98 0.68 -2.18 16 2 C 0.06 1.39 2.97 29.85 0.09 1.48 16 3 H 0.11 2.75 7.16 -2.39 -0.02 2.74 16 4 O -0.34 -11.77 9.42 -45.07 -0.42 -12.20 16 5 C 0.47 18.54 7.93 71.24 0.56 19.10 16 6 O -0.53 -23.57 15.20 21.99 0.33 -23.23 16 7 C -0.10 -3.99 5.75 29.85 0.17 -3.82 16 8 C 0.04 2.16 4.26 29.85 0.13 2.29 16 9 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 10 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 13 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 17 C 0.52 12.43 7.18 87.66 0.63 13.06 16 18 O -0.56 -18.99 16.51 15.71 0.26 -18.73 16 19 N -0.70 -9.15 5.52 -463.07 -2.55 -11.71 16 20 C 0.13 1.52 5.66 86.38 0.49 2.01 16 21 C -0.08 -0.41 5.51 29.85 0.16 -0.25 16 22 C -0.05 -0.42 5.17 -19.67 -0.10 -0.52 16 23 C -0.17 -1.79 9.82 22.36 0.22 -1.57 16 24 C 0.08 1.10 11.18 84.68 0.95 2.05 16 25 N -0.52 -8.82 10.36 -195.85 -2.03 -10.85 16 26 C 0.08 1.05 11.18 84.68 0.95 2.00 16 27 C -0.17 -1.60 9.82 22.36 0.22 -1.38 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.12 1.08 7.92 -2.39 -0.02 1.06 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 33 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 34 H 0.00 -0.26 8.10 -2.39 -0.02 -0.28 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.42 2.30 8.26 -92.71 -0.77 1.53 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.11 0.14 8.10 -2.39 -0.02 0.12 16 40 H 0.10 0.26 8.10 -2.38 -0.02 0.24 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -82.60 384.54 3.98 -78.62 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.24 Total: 7.22 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.85 Total: 2.21 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -4.30 Total: -79.81 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: 0.17 Total: -54.16 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -82.60 3.98 -78.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813098169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.938 kcal (2) G-P(sol) polarization free energy of solvation -82.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds