Wall clock time and date at job start Tue Mar 31 2020 12:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47266 * 2 1 4 4 C 1.46493 * 120.00706 * 89.99299 * 3 2 1 5 5 C 1.50695 * 109.47569 * 270.00722 * 4 3 2 6 6 C 1.38237 * 120.00478 * 89.99640 * 5 4 3 7 7 C 1.38231 * 119.99851 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00405 * 359.96830 * 7 6 5 9 9 C 1.38235 * 120.00019 * 0.28861 * 8 7 6 10 10 C 1.38238 * 119.99866 * 359.50342 * 9 8 7 11 11 C 1.34782 * 119.99441 * 269.99876 * 3 2 1 12 12 O 1.21283 * 119.99878 * 179.97438 * 11 3 2 13 13 C 1.50698 * 120.00203 * 359.97438 * 11 3 2 14 14 N 1.46497 * 109.47472 * 174.83967 * 13 11 3 15 15 C 1.36939 * 120.00095 * 94.57256 * 14 13 11 16 16 H 1.08004 * 119.99870 * 346.95608 * 15 14 13 17 17 C 1.38808 * 120.00494 * 166.95946 * 15 14 13 18 18 N 1.31626 * 119.99474 * 359.40760 * 17 15 14 19 19 Si 1.86797 * 120.00587 * 179.40873 * 17 15 14 20 20 H 1.48501 * 109.46987 * 89.99760 * 19 17 15 21 21 H 1.48494 * 109.47529 * 209.99924 * 19 17 15 22 22 H 1.48503 * 109.47042 * 330.00282 * 19 17 15 23 23 C 1.46497 * 120.00327 * 274.57929 * 14 13 11 24 24 C 1.50705 * 109.46870 * 263.15477 * 23 14 13 25 25 O 1.20829 * 119.99897 * 5.98994 * 24 23 14 26 26 O 1.34228 * 120.00112 * 185.99409 * 24 23 14 27 27 H 1.09005 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47156 * 300.00641 * 1 2 3 29 29 H 1.08996 * 109.46900 * 60.00259 * 1 2 3 30 30 H 1.08996 * 109.47458 * 239.99488 * 2 1 3 31 31 H 1.09007 * 109.46731 * 119.99348 * 2 1 3 32 32 H 1.08996 * 109.47326 * 149.99796 * 4 3 2 33 33 H 1.09000 * 109.46584 * 30.00250 * 4 3 2 34 34 H 1.07997 * 119.99763 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99942 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.00195 * 180.02562 * 8 7 6 37 37 H 1.08001 * 120.00158 * 179.72012 * 9 8 7 38 38 H 1.07999 * 119.99800 * 180.27949 * 10 9 8 39 39 H 1.09007 * 109.47123 * 294.84333 * 13 11 3 40 40 H 1.09002 * 109.47456 * 54.83720 * 13 11 3 41 41 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47074 * 23.14844 * 23 14 13 43 43 H 1.08998 * 109.47512 * 143.15064 * 23 14 13 44 44 H 0.96696 * 117.00577 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 1.2686 5 6 1.0067 2.7823 1.7036 6 6 0.0851 2.1308 2.5017 7 6 -1.0666 2.7827 2.9011 8 6 -1.2964 4.0863 2.5030 9 6 -0.3774 4.7361 1.7004 10 6 0.7764 4.0857 1.3045 11 6 2.2431 2.0164 -1.1673 12 8 2.6469 3.1600 -1.1674 13 6 1.9924 1.3058 -2.4723 14 7 2.1909 2.2400 -3.5832 15 6 3.4033 2.3028 -4.2168 16 1 4.2681 1.8291 -3.7760 17 6 3.5209 2.9753 -5.4253 18 7 2.4645 3.5427 -5.9681 19 14 5.1781 3.0751 -6.2814 20 1 5.3335 1.9154 -7.1958 21 1 5.2567 4.3355 -7.0626 22 1 6.2618 3.0536 -5.2662 23 6 1.0924 3.1072 -4.0162 24 6 0.3915 2.4799 -5.1937 25 8 0.6992 1.3700 -5.5588 26 8 -0.5746 3.1542 -5.8368 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0644 2.7985 1.1382 33 1 2.5505 1.3453 2.0283 34 1 0.2649 1.1125 2.8132 35 1 -1.7864 2.2738 3.5251 36 1 -2.1960 4.5958 2.8154 37 1 -0.5591 5.7531 1.3856 38 1 1.4966 4.5949 0.6812 39 1 2.6868 0.4713 -2.5709 40 1 0.9691 0.9309 -2.4913 41 1 2.5468 4.0130 -6.8125 42 1 0.3845 3.2333 -3.1970 43 1 1.4899 4.0799 -4.3059 44 1 -0.9951 2.7109 -6.5863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829723040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:23 Heat of formation + Delta-G solvation = -61.571839 kcal Electronic energy + Delta-G solvation = -28031.930476 eV Core-core repulsion = 24143.770316 eV Total energy + Delta-G solvation = -3888.160159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89101 -38.74244 -38.36463 -35.84317 -35.22454 -34.16886 -32.38047 -31.25961 -30.89158 -29.95712 -28.17532 -26.84516 -25.37016 -23.25278 -22.50724 -22.42405 -21.28132 -20.07037 -18.66599 -16.92907 -16.89226 -16.73931 -16.36796 -15.88958 -15.39282 -15.02733 -14.91669 -14.69237 -14.50620 -13.95733 -13.68480 -13.47736 -13.34152 -13.30282 -13.00614 -12.83102 -12.65087 -12.45979 -12.01039 -11.64713 -11.51697 -11.37261 -11.12193 -11.00982 -10.97120 -10.89207 -10.81951 -10.46748 -10.13911 -10.01105 -9.90945 -9.44159 -9.03618 -8.84349 -8.70187 -8.53146 -8.34633 -7.11232 -5.86115 -3.27195 1.33884 1.45899 3.27634 3.35981 3.40173 3.44011 3.45887 3.94197 4.07677 4.37430 4.69678 4.80074 4.86184 4.99745 5.02622 5.08826 5.21975 5.30446 5.36849 5.40185 5.47547 5.53198 5.58281 5.72040 5.76390 5.87203 5.90074 6.04511 6.09110 6.12881 6.17936 6.33413 6.47232 6.48373 6.57962 6.70680 6.85744 7.05715 7.08429 7.33916 7.62936 7.80652 8.03989 8.18376 8.86720 9.04894 9.59489 9.70285 10.06360 11.20948 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.004014 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.587284 B = 6974.179504 C = 7310.766420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 N -0.621 5.621 4 C 0.153 3.847 5 C -0.098 4.098 6 C -0.109 4.109 7 C -0.129 4.129 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.093 4.093 11 C 0.483 3.517 12 O -0.515 6.515 13 C 0.136 3.864 14 N -0.552 5.552 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.923 5.923 19 Si 0.926 3.074 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.200 3.800 24 C 0.492 3.508 25 O -0.544 6.544 26 O -0.539 6.539 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.259 0.741 42 H 0.039 0.961 43 H 0.126 0.874 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -4.107 16.498 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.014 4.014 3 N -0.357 5.357 4 C 0.030 3.970 5 C -0.099 4.099 6 C -0.128 4.128 7 C -0.147 4.147 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.112 4.112 11 C 0.269 3.731 12 O -0.388 6.388 13 C 0.004 3.996 14 N -0.269 5.269 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.757 3.243 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.072 3.928 24 C 0.334 3.666 25 O -0.432 6.432 26 O -0.349 6.349 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.144 0.856 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.367 -3.485 16.521 18.045 hybrid contribution 0.374 -0.326 -1.116 1.221 sum -5.993 -3.811 15.405 16.963 Atomic orbital electron populations 1.22359 0.96310 1.01859 1.03128 1.21496 0.94324 0.82717 1.02840 1.48396 1.68050 1.13957 1.05338 1.20263 0.94361 0.96480 0.85902 1.20323 0.97469 0.94615 0.97519 1.20969 0.94237 0.99274 0.98310 1.21056 0.97580 0.95172 1.00900 1.21120 0.99206 0.95168 0.98581 1.21198 0.94515 1.00148 0.98216 1.21301 0.97444 0.94495 0.97926 1.23086 0.76199 0.87840 0.85936 1.90626 1.43478 1.17844 1.86822 1.20769 1.00851 0.92604 0.85375 1.43434 1.09654 1.41429 1.32422 1.19349 0.86008 1.29468 1.00531 0.90270 1.24800 0.98196 1.00112 0.96773 1.69410 1.27336 1.40350 1.20193 0.85888 0.82146 0.77107 0.79192 1.21499 1.21528 1.20512 1.20311 0.87438 0.96553 0.88516 1.24767 0.73766 0.82860 0.85230 1.90470 1.62747 1.22526 1.67463 1.84607 1.51453 1.52737 1.46058 0.91995 0.91869 0.92228 0.90092 0.91017 0.89327 0.90524 0.86418 0.86490 0.86506 0.86217 0.85240 0.89829 0.91415 0.92948 0.94333 0.85640 0.76845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 10.19 37.16 0.38 -1.51 16 2 C 0.11 1.19 5.90 -4.04 -0.02 1.17 16 3 N -0.62 -8.80 2.46 -175.06 -0.43 -9.23 16 4 C 0.15 1.95 5.57 -5.20 -0.03 1.92 16 5 C -0.10 -1.25 5.39 -104.62 -0.56 -1.82 16 6 C -0.11 -1.18 7.54 -39.58 -0.30 -1.48 16 7 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 8 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 9 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 10 C -0.09 -1.32 9.70 -39.58 -0.38 -1.70 16 11 C 0.48 9.09 7.73 -10.98 -0.08 9.01 16 12 O -0.51 -11.63 15.55 5.55 0.09 -11.54 16 13 C 0.14 2.72 4.60 -5.20 -0.02 2.70 16 14 N -0.55 -13.81 1.56 -175.98 -0.27 -14.08 16 15 C -0.23 -6.17 9.67 -15.06 -0.15 -6.32 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.70 16 17 C 0.00 -0.13 5.36 -17.43 -0.09 -0.22 16 18 N -0.92 -26.34 7.91 55.49 0.44 -25.90 16 19 Si 0.93 22.48 29.55 -169.99 -5.02 17.46 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.20 4.98 5.63 -5.19 -0.03 4.95 16 24 C 0.49 12.39 5.84 36.01 0.21 12.60 16 25 O -0.54 -15.16 17.03 -18.75 -0.32 -15.48 16 26 O -0.54 -11.75 13.42 -39.25 -0.53 -12.27 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.66 5.26 -51.93 -0.27 0.39 16 29 H 0.06 0.76 7.13 -51.93 -0.37 0.39 16 30 H 0.08 0.88 6.58 -51.93 -0.34 0.54 16 31 H 0.07 0.60 7.89 -51.92 -0.41 0.19 16 32 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 33 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 34 H 0.12 1.03 7.73 -52.49 -0.41 0.62 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.13 2.07 7.58 -52.49 -0.40 1.67 16 39 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 40 H 0.07 1.27 6.87 -51.93 -0.36 0.91 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 43 H 0.13 3.45 6.31 -51.93 -0.33 3.12 16 44 H 0.38 6.60 9.10 45.56 0.41 7.01 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -34.50 365.72 -8.12 -42.62 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.30 Total: 9.02 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -2.28 Total: 13.90 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.27 Total: -49.21 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.76 Total: -39.29 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.50 -8.12 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829723040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.955 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds