Wall clock time and date at job start Tue Mar 31 2020 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47266 * 2 1 4 4 C 1.46493 * 120.00706 * 89.99299 * 3 2 1 5 5 C 1.50695 * 109.47569 * 270.00722 * 4 3 2 6 6 C 1.38237 * 120.00478 * 89.99640 * 5 4 3 7 7 C 1.38231 * 119.99851 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00405 * 359.96830 * 7 6 5 9 9 C 1.38235 * 120.00019 * 0.28861 * 8 7 6 10 10 C 1.38238 * 119.99866 * 359.50342 * 9 8 7 11 11 C 1.34782 * 119.99441 * 269.99876 * 3 2 1 12 12 O 1.21283 * 119.99878 * 179.97438 * 11 3 2 13 13 C 1.50698 * 120.00203 * 359.97438 * 11 3 2 14 14 N 1.46497 * 109.47472 * 174.83967 * 13 11 3 15 15 C 1.36939 * 120.00095 * 94.57256 * 14 13 11 16 16 H 1.08004 * 119.99870 * 346.95608 * 15 14 13 17 17 C 1.38808 * 120.00494 * 166.95946 * 15 14 13 18 18 N 1.31626 * 119.99474 * 359.40760 * 17 15 14 19 19 Si 1.86797 * 120.00587 * 179.40873 * 17 15 14 20 20 H 1.48501 * 109.46987 * 89.99760 * 19 17 15 21 21 H 1.48494 * 109.47529 * 209.99924 * 19 17 15 22 22 H 1.48503 * 109.47042 * 330.00282 * 19 17 15 23 23 C 1.46497 * 120.00327 * 274.57929 * 14 13 11 24 24 C 1.50705 * 109.46870 * 263.15477 * 23 14 13 25 25 O 1.20829 * 119.99897 * 5.98994 * 24 23 14 26 26 O 1.34228 * 120.00112 * 185.99409 * 24 23 14 27 27 H 1.09005 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47156 * 300.00641 * 1 2 3 29 29 H 1.08996 * 109.46900 * 60.00259 * 1 2 3 30 30 H 1.08996 * 109.47458 * 239.99488 * 2 1 3 31 31 H 1.09007 * 109.46731 * 119.99348 * 2 1 3 32 32 H 1.08996 * 109.47326 * 149.99796 * 4 3 2 33 33 H 1.09000 * 109.46584 * 30.00250 * 4 3 2 34 34 H 1.07997 * 119.99763 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99942 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.00195 * 180.02562 * 8 7 6 37 37 H 1.08001 * 120.00158 * 179.72012 * 9 8 7 38 38 H 1.07999 * 119.99800 * 180.27949 * 10 9 8 39 39 H 1.09007 * 109.47123 * 294.84333 * 13 11 3 40 40 H 1.09002 * 109.47456 * 54.83720 * 13 11 3 41 41 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47074 * 23.14844 * 23 14 13 43 43 H 1.08998 * 109.47512 * 143.15064 * 23 14 13 44 44 H 0.96696 * 117.00577 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 1.2686 5 6 1.0067 2.7823 1.7036 6 6 0.0851 2.1308 2.5017 7 6 -1.0666 2.7827 2.9011 8 6 -1.2964 4.0863 2.5030 9 6 -0.3774 4.7361 1.7004 10 6 0.7764 4.0857 1.3045 11 6 2.2431 2.0164 -1.1673 12 8 2.6469 3.1600 -1.1674 13 6 1.9924 1.3058 -2.4723 14 7 2.1909 2.2400 -3.5832 15 6 3.4033 2.3028 -4.2168 16 1 4.2681 1.8291 -3.7760 17 6 3.5209 2.9753 -5.4253 18 7 2.4645 3.5427 -5.9681 19 14 5.1781 3.0751 -6.2814 20 1 5.3335 1.9154 -7.1958 21 1 5.2567 4.3355 -7.0626 22 1 6.2618 3.0536 -5.2662 23 6 1.0924 3.1072 -4.0162 24 6 0.3915 2.4799 -5.1937 25 8 0.6992 1.3700 -5.5588 26 8 -0.5746 3.1542 -5.8368 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.0644 2.7985 1.1382 33 1 2.5505 1.3453 2.0283 34 1 0.2649 1.1125 2.8132 35 1 -1.7864 2.2738 3.5251 36 1 -2.1960 4.5958 2.8154 37 1 -0.5591 5.7531 1.3856 38 1 1.4966 4.5949 0.6812 39 1 2.6868 0.4713 -2.5709 40 1 0.9691 0.9309 -2.4913 41 1 2.5468 4.0130 -6.8125 42 1 0.3845 3.2333 -3.1970 43 1 1.4899 4.0799 -4.3059 44 1 -0.9951 2.7109 -6.5863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829723040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:22 Heat of formation + Delta-G solvation = -82.557181 kcal Electronic energy + Delta-G solvation = -28032.840468 eV Core-core repulsion = 24143.770316 eV Total energy + Delta-G solvation = -3889.070152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13359 -40.46056 -39.68501 -37.44436 -36.74318 -36.12438 -33.64360 -32.93166 -31.79827 -30.95690 -29.91340 -28.63867 -26.67920 -24.57618 -23.92071 -23.39634 -22.39205 -21.89362 -20.02735 -18.86299 -18.53001 -17.93227 -17.81514 -17.36116 -16.87431 -16.54211 -16.40089 -15.92498 -15.78103 -15.77370 -15.18628 -14.93230 -14.68985 -14.45555 -14.14256 -14.09753 -13.61311 -13.54887 -13.46581 -13.21977 -12.94579 -12.91932 -12.74831 -12.48681 -12.36814 -12.15332 -12.02483 -11.99360 -11.87968 -11.79754 -11.77732 -11.29064 -10.78219 -10.55919 -9.74960 -9.71628 -9.49596 -9.05166 -7.94547 -5.35817 0.42594 0.54947 1.44336 1.46021 1.54495 1.85749 2.04744 2.18295 2.47779 2.83059 3.01144 3.32228 3.54289 3.79775 3.94081 4.07080 4.19071 4.20547 4.32904 4.36935 4.42091 4.50816 4.54384 4.63956 4.64918 4.70570 4.79952 4.83453 4.96393 5.07271 5.15540 5.20940 5.24223 5.29521 5.45775 5.50390 5.60364 5.66890 5.73949 5.79505 6.14537 6.17160 6.21102 6.53941 6.98058 7.43249 7.63601 7.78112 8.04520 9.10318 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.004014 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.587284 B = 6974.179504 C = 7310.766420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.608 5.608 4 C 0.153 3.847 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.122 4.122 11 C 0.486 3.514 12 O -0.563 6.563 13 C 0.135 3.865 14 N -0.568 5.568 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.059 4.059 18 N -0.942 5.942 19 Si 0.984 3.016 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.205 3.795 24 C 0.498 3.502 25 O -0.574 6.574 26 O -0.532 6.532 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 -6.282 18.800 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.343 5.343 4 C 0.031 3.969 5 C -0.110 4.110 6 C -0.122 4.122 7 C -0.144 4.144 8 C -0.142 4.142 9 C -0.157 4.157 10 C -0.141 4.141 11 C 0.272 3.728 12 O -0.440 6.440 13 C 0.005 3.995 14 N -0.287 5.287 15 C -0.362 4.362 16 H 0.097 0.903 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.813 3.187 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.076 3.924 24 C 0.341 3.659 25 O -0.465 6.465 26 O -0.343 6.343 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.524 -5.705 18.882 21.111 hybrid contribution 0.609 0.318 -1.709 1.842 sum -6.916 -5.387 17.172 19.280 Atomic orbital electron populations 1.22312 0.95715 1.03155 1.01925 1.21842 0.94760 0.80647 1.04835 1.48282 1.66381 1.15093 1.04523 1.20388 0.93897 0.96892 0.85726 1.20325 0.98066 0.94107 0.98498 1.21265 0.93519 1.00414 0.96985 1.21485 0.97816 0.94819 1.00275 1.21449 0.99401 0.95759 0.97581 1.21344 0.94591 1.00658 0.99058 1.21211 0.97925 0.95814 0.99139 1.22573 0.76156 0.87099 0.86960 1.90619 1.46038 1.19767 1.87621 1.20929 1.01900 0.92101 0.84580 1.43538 1.09034 1.42416 1.33720 1.19607 0.87094 1.28891 1.00568 0.90272 1.25543 1.01158 1.00595 0.97686 1.69575 1.28606 1.41145 1.19986 0.84992 0.79104 0.76549 0.78094 1.21673 1.21793 1.19621 1.20090 0.87767 0.95391 0.89142 1.24706 0.73705 0.82287 0.85158 1.90443 1.63910 1.23778 1.68348 1.84529 1.50608 1.52322 1.46810 0.89435 0.91451 0.95000 0.90118 0.87104 0.92037 0.86504 0.83379 0.83267 0.84101 0.85941 0.88707 0.88887 0.90040 0.93828 0.92734 0.88597 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.19 71.98 0.73 -2.37 16 2 C 0.10 1.87 5.90 86.38 0.51 2.38 16 3 N -0.61 -16.46 2.46 -826.17 -2.03 -18.49 16 4 C 0.15 3.71 5.57 85.63 0.48 4.19 16 5 C -0.11 -2.66 5.39 -19.87 -0.11 -2.77 16 6 C -0.10 -1.88 7.54 22.27 0.17 -1.71 16 7 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 8 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 9 C -0.14 -3.47 10.05 22.27 0.22 -3.25 16 10 C -0.12 -3.60 9.70 22.27 0.22 -3.38 16 11 C 0.49 18.51 7.73 87.66 0.68 19.18 16 12 O -0.56 -26.66 15.55 -3.04 -0.05 -26.71 16 13 C 0.13 5.43 4.60 85.63 0.39 5.83 16 14 N -0.57 -29.06 1.56 -710.68 -1.11 -30.17 16 15 C -0.23 -13.00 9.67 84.03 0.81 -12.19 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.06 -3.32 5.36 84.86 0.45 -2.87 16 18 N -0.94 -55.05 7.91 21.65 0.17 -54.88 16 19 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.20 10.48 5.63 85.64 0.48 10.96 16 24 C 0.50 25.32 5.84 71.24 0.42 25.74 16 25 O -0.57 -32.18 17.03 21.96 0.37 -31.81 16 26 O -0.53 -23.01 13.42 -51.40 -0.69 -23.70 16 27 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.07 1.15 5.26 -2.38 -0.01 1.14 16 29 H 0.03 0.75 7.13 -2.39 -0.02 0.73 16 30 H 0.08 1.54 6.58 -2.39 -0.02 1.52 16 31 H 0.11 1.27 7.89 -2.38 -0.02 1.25 16 32 H 0.06 1.84 7.36 -2.39 -0.02 1.82 16 33 H 0.12 1.87 7.84 -2.39 -0.02 1.85 16 34 H 0.15 1.77 7.73 -2.91 -0.02 1.75 16 35 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.09 3.38 7.58 -2.91 -0.02 3.36 16 39 H 0.09 3.51 7.53 -2.38 -0.02 3.49 16 40 H 0.08 3.02 6.87 -2.39 -0.02 3.01 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.05 2.55 8.02 -2.38 -0.02 2.53 16 43 H 0.10 5.51 6.31 -2.39 -0.02 5.49 16 44 H 0.40 13.55 9.10 -74.06 -0.67 12.88 16 Total: -1.00 -77.71 365.72 4.95 -72.75 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.35 Total: 28.33 kcal Atomic # 6 Polarization: 29.71 SS G_CDS: 5.91 Total: 35.62 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -2.97 Total: -103.55 kcal Atomic # 8 Polarization: -81.85 SS G_CDS: -0.36 Total: -82.22 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.71 4.95 -72.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829723040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.804 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds