Wall clock time and date at job start Tue Mar 31 2020 12:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46758 * 2 1 4 4 C 1.46503 * 119.99578 * 274.71329 * 3 2 1 5 5 C 1.50694 * 109.47088 * 270.00260 * 4 3 2 6 6 O 1.21283 * 120.00452 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99913 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99947 * 179.97438 * 7 5 4 9 9 C 1.46501 * 120.00054 * 0.02562 * 7 5 4 10 10 C 1.34777 * 120.00208 * 94.71580 * 3 2 1 11 11 O 1.21583 * 119.99593 * 355.69565 * 10 3 2 12 12 C 1.47535 * 119.99913 * 175.69521 * 10 3 2 13 13 C 1.39672 * 120.19840 * 58.50776 * 12 10 3 14 14 C 1.37821 * 119.91816 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32736 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40011 * 0.02562 * 15 14 13 17 17 C 1.38842 * 120.06862 * 359.95558 * 16 15 14 18 18 O 1.35519 * 120.15559 * 180.02562 * 17 16 15 19 19 C 1.34819 * 117.00237 * 354.21496 * 18 17 16 20 20 H 1.07998 * 120.00038 * 5.14302 * 19 18 17 21 21 C 1.38698 * 120.00090 * 185.13757 * 19 18 17 22 22 N 1.31521 * 119.99808 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47086 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47381 * 120.00199 * 23 21 19 26 26 H 1.48502 * 109.46894 * 240.00077 * 23 21 19 27 27 H 1.09002 * 109.47367 * 300.00072 * 1 2 3 28 28 H 1.09001 * 109.46994 * 60.00915 * 1 2 3 29 29 H 1.09007 * 109.46601 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47367 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.46994 * 119.99085 * 2 1 3 32 32 H 1.08998 * 109.47125 * 30.00430 * 4 3 2 33 33 H 1.09004 * 109.47026 * 150.00138 * 4 3 2 34 34 H 1.08996 * 109.46602 * 90.00541 * 8 7 5 35 35 H 1.08998 * 109.46743 * 209.99596 * 8 7 5 36 36 H 1.08999 * 109.47178 * 330.00666 * 8 7 5 37 37 H 1.09001 * 109.47336 * 89.99784 * 9 7 5 38 38 H 1.08997 * 109.46781 * 210.00274 * 9 7 5 39 39 H 1.09007 * 109.46877 * 329.99565 * 9 7 5 40 40 H 1.07999 * 120.03652 * 0.27918 * 13 12 10 41 41 H 1.08005 * 119.83616 * 180.02562 * 14 13 12 42 42 H 1.07992 * 119.80041 * 179.97438 * 15 14 13 43 43 H 1.07994 * 119.96265 * 179.97438 * 16 15 14 44 44 H 0.97004 * 120.00156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1641 2.1066 -1.2645 5 6 3.5490 1.8833 -1.8148 6 8 4.3367 1.1865 -1.2106 7 7 3.9125 2.4580 -2.9786 8 6 5.2592 2.2413 -3.5134 9 6 2.9613 3.3001 -3.7082 10 6 2.3334 1.9847 1.1632 11 8 2.1388 1.4114 2.2176 12 6 2.9143 3.3409 1.1571 13 6 2.2188 4.4004 0.5700 14 6 2.7671 5.6648 0.5671 15 6 4.0067 5.8913 1.1436 16 6 4.7060 4.8538 1.7265 17 6 4.1690 3.5735 1.7392 18 8 4.8539 2.5536 2.3114 19 6 6.1022 2.8215 2.7445 20 1 6.4827 3.8314 2.7039 21 6 6.8977 1.8001 3.2421 22 7 6.4344 0.5702 3.2911 23 14 8.6270 2.1714 3.8428 24 1 8.9066 3.6208 3.6812 25 1 8.7434 1.8010 5.2761 26 1 9.6061 1.3873 3.0479 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 1.4260 1.7427 -1.9793 33 1 2.0088 3.1717 -1.0924 34 1 5.2569 1.3627 -4.1584 35 1 5.5659 3.1142 -4.0896 36 1 5.9564 2.0859 -2.6901 37 1 3.0623 4.3335 -3.3767 38 1 3.1677 3.2393 -4.7767 39 1 1.9461 2.9537 -3.5140 40 1 1.2508 4.2297 0.1227 41 1 2.2280 6.4832 0.1131 42 1 4.4286 6.8854 1.1361 43 1 5.6717 5.0382 2.1734 44 1 6.9905 -0.1441 3.6395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919815078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:30 Heat of formation + Delta-G solvation = -45.938667 kcal Electronic energy + Delta-G solvation = -28572.326565 eV Core-core repulsion = 24684.844311 eV Total energy + Delta-G solvation = -3887.482254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22871 -39.15245 -38.13769 -36.34681 -35.44886 -34.99905 -32.29734 -31.72130 -29.95535 -29.04505 -28.63449 -27.15719 -25.39387 -25.16735 -23.84011 -22.06074 -21.33660 -19.88226 -18.68083 -18.04750 -17.20051 -17.02575 -16.43883 -16.07590 -15.50159 -15.33331 -14.75679 -14.72284 -14.21704 -13.94223 -13.67767 -13.60322 -13.41785 -13.20876 -12.91996 -12.89310 -12.68625 -12.60929 -12.57283 -12.11602 -11.94822 -11.78525 -11.71092 -11.62301 -11.29621 -11.08362 -10.89813 -10.76783 -10.70966 -10.41252 -9.74300 -9.56890 -8.99504 -8.83553 -8.56526 -8.33558 -8.12817 -7.28963 -6.40270 -3.99952 1.84699 2.30630 2.89148 2.96562 3.14447 3.15555 3.21330 3.49106 3.58577 3.97446 4.49494 4.69124 4.94168 5.02403 5.09122 5.12024 5.19144 5.26469 5.32934 5.38062 5.43567 5.50516 5.54109 5.57597 5.61044 5.64505 5.72368 5.90848 5.96142 6.00163 6.16146 6.26502 6.41192 6.53581 6.56952 6.66638 6.92118 6.96474 7.05802 7.26595 7.32558 7.43971 7.69666 7.85429 8.00111 8.45974 8.91052 9.01211 9.70313 10.75335 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.005308 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.074630 B = 5274.024976 C = 5470.713243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.599 5.599 4 C 0.091 3.909 5 C 0.486 3.514 6 O -0.500 6.500 7 N -0.629 5.629 8 C 0.088 3.912 9 C 0.079 3.921 10 C 0.589 3.411 11 O -0.516 6.516 12 C -0.215 4.215 13 C -0.054 4.054 14 C -0.223 4.223 15 C -0.057 4.057 16 C -0.233 4.233 17 C 0.191 3.809 18 O -0.145 6.145 19 C -0.398 4.398 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.840 5.840 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 6.272 -15.610 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.333 5.333 4 C -0.037 4.037 5 C 0.272 3.728 6 O -0.372 6.372 7 N -0.366 5.366 8 C -0.055 4.055 9 C -0.064 4.064 10 C 0.378 3.622 11 O -0.390 6.390 12 C -0.220 4.220 13 C -0.073 4.073 14 C -0.243 4.243 15 C -0.076 4.076 16 C -0.252 4.252 17 C 0.133 3.867 18 O -0.044 6.044 19 C -0.474 4.474 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.472 5.472 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.180 5.025 -14.504 17.394 hybrid contribution 1.000 0.384 0.001 1.071 sum -7.181 5.410 -14.503 17.063 Atomic orbital electron populations 1.22149 0.96336 1.01812 1.01947 1.21333 0.93355 0.82510 1.03528 1.47467 1.66926 1.13993 1.04913 1.21626 0.94119 1.00522 0.87425 1.21451 0.90951 0.80217 0.80201 1.90849 1.52629 1.36689 1.57037 1.47768 1.14435 1.51145 1.23270 1.21574 0.83838 1.00437 0.99682 1.21783 0.92859 0.94949 0.96843 1.18118 0.75692 0.85613 0.82743 1.90756 1.51804 1.65984 1.30491 1.18729 0.97560 0.93592 1.12094 1.20621 0.97651 0.92226 0.96805 1.20417 0.98057 0.96266 1.09512 1.20854 0.94079 0.97578 0.95065 1.21141 1.02970 0.92542 1.08568 1.19139 0.90314 0.88225 0.89041 1.84020 1.26637 1.31760 1.62026 1.21431 0.87538 0.96102 1.42279 0.88887 1.25363 0.99818 0.94409 0.96731 1.70097 1.36783 0.99854 1.40504 0.85648 0.80300 0.78851 0.78593 1.19006 1.19994 1.20054 0.92118 0.93054 0.91866 0.91375 0.89294 0.88214 0.86528 0.93221 0.91597 0.90361 0.92333 0.91201 0.91194 0.86696 0.87175 0.87217 0.85124 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.12 1.92 6.15 -4.04 -0.02 1.90 16 3 N -0.60 -11.19 1.96 -176.29 -0.35 -11.54 16 4 C 0.09 1.30 4.22 -5.19 -0.02 1.28 16 5 C 0.49 8.36 7.74 -10.99 -0.09 8.28 16 6 O -0.50 -11.68 16.01 5.55 0.09 -11.59 16 7 N -0.63 -8.21 3.27 -189.51 -0.62 -8.83 16 8 C 0.09 1.08 10.44 59.85 0.62 1.70 16 9 C 0.08 0.62 10.24 59.85 0.61 1.24 16 10 C 0.59 13.84 6.73 -12.47 -0.08 13.75 16 11 O -0.52 -14.29 16.50 5.26 0.09 -14.20 16 12 C -0.22 -4.88 5.02 -104.81 -0.53 -5.40 16 13 C -0.05 -0.95 7.65 -39.20 -0.30 -1.25 16 14 C -0.22 -3.62 10.02 -39.61 -0.40 -4.02 16 15 C -0.06 -1.02 10.03 -39.53 -0.40 -1.42 16 16 C -0.23 -5.18 9.16 -39.43 -0.36 -5.54 16 17 C 0.19 4.94 6.66 -38.60 -0.26 4.69 16 18 O -0.14 -4.48 9.09 0.76 0.01 -4.47 16 19 C -0.40 -11.74 9.49 30.90 0.29 -11.45 16 20 H 0.09 2.50 5.21 -52.49 -0.27 2.23 16 21 C 0.04 1.27 5.49 -17.51 -0.10 1.17 16 22 N -0.84 -26.35 13.67 55.48 0.76 -25.59 16 23 Si 0.94 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 32 H 0.10 1.00 7.33 -51.93 -0.38 0.62 16 33 H 0.12 1.54 4.21 -51.93 -0.22 1.32 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.08 1.23 7.42 -51.93 -0.39 0.84 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 39 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 40 H 0.12 1.59 7.13 -52.49 -0.37 1.21 16 41 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 44 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -40.05 370.76 -6.10 -46.15 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.00 Total: 4.89 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.64 Total: 3.22 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.21 Total: -45.96 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: 0.18 Total: -30.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.05 -6.10 -46.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919815078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.210 kcal (2) G-P(sol) polarization free energy of solvation -40.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds