Wall clock time and date at job start Tue Mar 31 2020 12:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46758 * 2 1 4 4 C 1.46503 * 119.99578 * 274.71329 * 3 2 1 5 5 C 1.50694 * 109.47088 * 270.00260 * 4 3 2 6 6 O 1.21283 * 120.00452 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99913 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99947 * 179.97438 * 7 5 4 9 9 C 1.46501 * 120.00054 * 0.02562 * 7 5 4 10 10 C 1.34777 * 120.00208 * 94.71580 * 3 2 1 11 11 O 1.21583 * 119.99593 * 355.69565 * 10 3 2 12 12 C 1.47535 * 119.99913 * 175.69521 * 10 3 2 13 13 C 1.39672 * 120.19840 * 58.50776 * 12 10 3 14 14 C 1.37821 * 119.91816 * 180.02562 * 13 12 10 15 15 C 1.38576 * 120.32736 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40011 * 0.02562 * 15 14 13 17 17 C 1.38842 * 120.06862 * 359.95558 * 16 15 14 18 18 O 1.35519 * 120.15559 * 180.02562 * 17 16 15 19 19 C 1.34819 * 117.00237 * 354.21496 * 18 17 16 20 20 H 1.07998 * 120.00038 * 5.14302 * 19 18 17 21 21 C 1.38698 * 120.00090 * 185.13757 * 19 18 17 22 22 N 1.31521 * 119.99808 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47086 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47381 * 120.00199 * 23 21 19 26 26 H 1.48502 * 109.46894 * 240.00077 * 23 21 19 27 27 H 1.09002 * 109.47367 * 300.00072 * 1 2 3 28 28 H 1.09001 * 109.46994 * 60.00915 * 1 2 3 29 29 H 1.09007 * 109.46601 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47367 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.46994 * 119.99085 * 2 1 3 32 32 H 1.08998 * 109.47125 * 30.00430 * 4 3 2 33 33 H 1.09004 * 109.47026 * 150.00138 * 4 3 2 34 34 H 1.08996 * 109.46602 * 90.00541 * 8 7 5 35 35 H 1.08998 * 109.46743 * 209.99596 * 8 7 5 36 36 H 1.08999 * 109.47178 * 330.00666 * 8 7 5 37 37 H 1.09001 * 109.47336 * 89.99784 * 9 7 5 38 38 H 1.08997 * 109.46781 * 210.00274 * 9 7 5 39 39 H 1.09007 * 109.46877 * 329.99565 * 9 7 5 40 40 H 1.07999 * 120.03652 * 0.27918 * 13 12 10 41 41 H 1.08005 * 119.83616 * 180.02562 * 14 13 12 42 42 H 1.07992 * 119.80041 * 179.97438 * 15 14 13 43 43 H 1.07994 * 119.96265 * 179.97438 * 16 15 14 44 44 H 0.97004 * 120.00156 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1641 2.1066 -1.2645 5 6 3.5490 1.8833 -1.8148 6 8 4.3367 1.1865 -1.2106 7 7 3.9125 2.4580 -2.9786 8 6 5.2592 2.2413 -3.5134 9 6 2.9613 3.3001 -3.7082 10 6 2.3334 1.9847 1.1632 11 8 2.1388 1.4114 2.2176 12 6 2.9143 3.3409 1.1571 13 6 2.2188 4.4004 0.5700 14 6 2.7671 5.6648 0.5671 15 6 4.0067 5.8913 1.1436 16 6 4.7060 4.8538 1.7265 17 6 4.1690 3.5735 1.7392 18 8 4.8539 2.5536 2.3114 19 6 6.1022 2.8215 2.7445 20 1 6.4827 3.8314 2.7039 21 6 6.8977 1.8001 3.2421 22 7 6.4344 0.5702 3.2911 23 14 8.6270 2.1714 3.8428 24 1 8.9066 3.6208 3.6812 25 1 8.7434 1.8010 5.2761 26 1 9.6061 1.3873 3.0479 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 1.4260 1.7427 -1.9793 33 1 2.0088 3.1717 -1.0924 34 1 5.2569 1.3627 -4.1584 35 1 5.5659 3.1142 -4.0896 36 1 5.9564 2.0859 -2.6901 37 1 3.0623 4.3335 -3.3767 38 1 3.1677 3.2393 -4.7767 39 1 1.9461 2.9537 -3.5140 40 1 1.2508 4.2297 0.1227 41 1 2.2280 6.4832 0.1131 42 1 4.4286 6.8854 1.1361 43 1 5.6717 5.0382 2.1734 44 1 6.9905 -0.1441 3.6395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919815078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:29 Heat of formation + Delta-G solvation = -77.076651 kcal Electronic energy + Delta-G solvation = -28573.676810 eV Core-core repulsion = 24684.844311 eV Total energy + Delta-G solvation = -3888.832498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75937 -40.67601 -39.84015 -38.09023 -36.83026 -36.42076 -34.37618 -33.12202 -31.38556 -30.68334 -29.84083 -28.11716 -27.46836 -26.27108 -25.29044 -23.63729 -22.92798 -21.27528 -20.13654 -19.94461 -18.82599 -18.25324 -18.09196 -17.52102 -16.75512 -16.61436 -16.48890 -16.40214 -15.74565 -15.62447 -15.42709 -15.14817 -14.73556 -14.51403 -14.39763 -14.35073 -14.20946 -13.63091 -13.57262 -13.39954 -13.36130 -13.13638 -12.95444 -12.88934 -12.79890 -12.66902 -12.53958 -12.31268 -12.14145 -12.00220 -11.49995 -11.18089 -10.88708 -10.77117 -9.91029 -9.65088 -9.60669 -9.06388 -8.50600 -6.21282 0.24183 0.69059 1.25554 1.37663 1.46707 1.51930 1.64706 2.05279 2.11399 2.24950 2.78157 3.11454 3.40887 3.59124 3.65865 3.99213 4.04946 4.10887 4.20713 4.25470 4.34526 4.39516 4.44520 4.50606 4.51311 4.51592 4.62269 4.81682 4.85122 4.91034 4.91731 5.01402 5.02789 5.03531 5.11016 5.29355 5.47450 5.50735 5.57964 5.60597 5.67551 5.91789 6.15523 6.23145 6.43530 6.90202 7.18098 7.27149 7.74910 8.72396 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.005308 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.074630 B = 5274.024976 C = 5470.713243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.109 3.891 3 N -0.592 5.592 4 C 0.089 3.911 5 C 0.475 3.525 6 O -0.583 6.583 7 N -0.621 5.621 8 C 0.085 3.915 9 C 0.066 3.934 10 C 0.575 3.425 11 O -0.583 6.583 12 C -0.230 4.230 13 C -0.047 4.047 14 C -0.182 4.182 15 C -0.049 4.049 16 C -0.252 4.252 17 C 0.144 3.856 18 O -0.217 6.217 19 C -0.419 4.419 20 H 0.106 0.894 21 C -0.028 4.028 22 N -0.916 5.916 23 Si 1.024 2.976 24 H -0.243 1.243 25 H -0.266 1.266 26 H -0.269 1.269 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.155 0.845 43 H 0.118 0.882 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 10.940 -19.827 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 N -0.324 5.324 4 C -0.037 4.037 5 C 0.263 3.737 6 O -0.462 6.462 7 N -0.356 5.356 8 C -0.058 4.058 9 C -0.075 4.075 10 C 0.366 3.634 11 O -0.462 6.462 12 C -0.235 4.235 13 C -0.065 4.065 14 C -0.200 4.200 15 C -0.067 4.067 16 C -0.272 4.272 17 C 0.091 3.909 18 O -0.121 6.121 19 C -0.495 4.495 20 H 0.123 0.877 21 C -0.226 4.226 22 N -0.553 5.553 23 Si 0.842 3.158 24 H -0.166 1.166 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.183 0.817 41 H 0.191 0.809 42 H 0.173 0.827 43 H 0.136 0.864 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.910 9.807 -18.864 23.897 hybrid contribution 1.521 -0.759 0.960 1.952 sum -9.389 9.049 -17.904 22.149 Atomic orbital electron populations 1.22030 0.92291 1.03500 1.02753 1.21486 0.96507 0.81519 1.01824 1.47519 1.65105 1.14476 1.05268 1.22083 0.93930 1.01375 0.86264 1.22033 0.91380 0.79501 0.80831 1.90850 1.54920 1.40697 1.59744 1.47933 1.15303 1.50169 1.22148 1.21640 0.83061 1.02825 0.98310 1.22235 0.92800 0.94559 0.97875 1.18552 0.75238 0.86327 0.83286 1.90705 1.54745 1.67564 1.33202 1.19176 0.96904 0.94910 1.12470 1.21237 0.98901 0.91171 0.95208 1.21197 0.96534 0.97018 1.05294 1.21416 0.94365 0.98065 0.92810 1.21290 1.03349 0.92592 1.09925 1.19952 0.91737 0.88971 0.90226 1.84007 1.27695 1.34437 1.66004 1.21971 0.88138 0.96918 1.42459 0.87668 1.26823 1.05025 0.93880 0.96851 1.70299 1.39166 1.01477 1.44394 0.84481 0.73458 0.79780 0.78051 1.16577 1.19071 1.19433 0.94201 0.89057 0.89866 0.89659 0.94552 0.82342 0.84540 0.91975 0.87831 0.95134 0.91023 0.88454 0.88531 0.81664 0.80856 0.82695 0.86389 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 10.24 71.98 0.74 -2.77 16 2 C 0.11 3.76 6.15 86.38 0.53 4.29 16 3 N -0.59 -22.35 1.96 -829.91 -1.63 -23.97 16 4 C 0.09 2.29 4.22 85.63 0.36 2.65 16 5 C 0.48 16.06 7.74 87.65 0.68 16.73 16 6 O -0.58 -29.24 16.01 -3.04 -0.05 -29.29 16 7 N -0.62 -14.61 3.27 -871.87 -2.85 -17.46 16 8 C 0.08 2.01 10.44 127.77 1.33 3.34 16 9 C 0.07 0.66 10.24 127.77 1.31 1.97 16 10 C 0.58 28.49 6.73 86.70 0.58 29.08 16 11 O -0.58 -35.40 16.50 -3.95 -0.07 -35.47 16 12 C -0.23 -10.55 5.02 -19.99 -0.10 -10.65 16 13 C -0.05 -1.43 7.65 22.52 0.17 -1.26 16 14 C -0.18 -4.65 10.02 22.25 0.22 -4.42 16 15 C -0.05 -1.52 10.03 22.30 0.22 -1.30 16 16 C -0.25 -11.32 9.16 22.36 0.20 -11.12 16 17 C 0.14 7.89 6.66 22.91 0.15 8.05 16 18 O -0.22 -14.80 9.09 -20.07 -0.18 -14.98 16 19 C -0.42 -27.02 9.49 67.93 0.64 -26.38 16 20 H 0.11 6.11 5.21 -2.91 -0.02 6.09 16 21 C -0.03 -1.78 5.49 84.85 0.47 -1.31 16 22 N -0.92 -63.70 13.67 21.62 0.30 -63.40 16 23 Si 1.02 47.14 29.55 68.60 2.03 49.16 16 24 H -0.24 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.09 2.60 8.11 -2.39 -0.02 2.58 16 31 H 0.04 1.62 7.34 -2.39 -0.02 1.60 16 32 H 0.16 2.19 7.33 -2.39 -0.02 2.17 16 33 H 0.14 2.89 4.21 -2.38 -0.01 2.88 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.64 8.07 -2.39 -0.02 1.62 16 36 H 0.03 1.02 7.42 -2.39 -0.02 1.00 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.51 8.07 -2.39 -0.02 0.49 16 39 H 0.10 0.47 6.44 -2.38 -0.02 0.46 16 40 H 0.17 3.37 7.13 -2.91 -0.02 3.35 16 41 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 44 H 0.27 17.16 8.31 -92.71 -0.77 16.39 16 Total: -1.00 -110.01 370.76 6.08 -103.93 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.02 Total: 24.59 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.52 Total: 6.90 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -4.19 Total: -104.84 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -0.30 Total: -79.74 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -110.01 6.08 -103.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919815078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -110.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds