Wall clock time and date at job start Tue Mar 31 2020 13:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47225 * 180.02562 * 6 4 3 8 8 C 1.38308 * 119.96025 * 269.72117 * 7 6 4 9 9 C 1.38264 * 120.14963 * 179.72892 * 8 7 6 10 10 C 1.38127 * 120.07392 * 0.54482 * 9 8 7 11 11 C 1.38891 * 119.92208 * 359.73254 * 10 9 8 12 12 N 1.39678 * 120.07413 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00313 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99630 * 359.97200 * 12 11 10 15 15 C 1.50699 * 109.46945 * 90.00603 * 14 12 11 16 16 O 1.21296 * 119.99930 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00253 * 180.02562 * 15 14 12 18 18 C 1.37094 * 119.99937 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00351 * 359.97438 * 18 17 15 20 20 C 1.38959 * 119.99484 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99628 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47218 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46961 * 119.99995 * 22 20 18 25 25 H 1.48499 * 109.47108 * 240.00032 * 22 20 18 26 26 C 1.38081 * 119.96311 * 90.00053 * 7 6 4 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 32 32 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 33 33 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 34 34 H 1.08003 * 119.92319 * 359.97438 * 8 7 6 35 35 H 1.07996 * 119.96249 * 180.27662 * 9 8 7 36 36 H 1.07997 * 120.03831 * 179.75158 * 10 9 8 37 37 H 1.09000 * 109.47074 * 89.99396 * 13 12 11 38 38 H 1.08996 * 109.46842 * 209.99968 * 13 12 11 39 39 H 1.09001 * 109.46586 * 329.99607 * 13 12 11 40 40 H 1.09001 * 109.46971 * 210.00075 * 14 12 11 41 41 H 1.09000 * 109.47621 * 330.00339 * 14 12 11 42 42 H 0.96995 * 119.99463 * 359.97438 * 17 15 14 43 43 H 0.96999 * 119.99564 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03950 * 359.97072 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4255 2.8587 0.0010 8 6 6.1156 2.8279 1.1992 9 6 7.4961 2.7499 1.2037 10 6 8.1912 2.7140 0.0107 11 6 7.5016 2.7506 -1.1944 12 7 8.2013 2.7139 -2.4027 13 6 7.4723 2.7520 -3.6728 14 6 9.6643 2.6372 -2.3998 15 6 10.0916 1.1921 -2.3989 16 8 9.2562 0.3127 -2.4000 17 7 11.4020 0.8768 -2.3957 18 6 11.7906 -0.4379 -2.3954 19 1 11.0469 -1.2209 -2.3972 20 6 13.1417 -0.7630 -2.3927 21 7 14.0466 0.1898 -2.3910 22 14 13.6713 -2.5543 -2.3916 23 1 12.4690 -3.4260 -2.3932 24 1 14.4853 -2.8306 -3.6025 25 1 14.4805 -2.8304 -1.1775 26 6 6.1141 2.8232 -1.1953 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.5850 3.4699 -0.8889 33 1 3.5843 3.4695 0.8911 34 1 5.5748 2.8607 2.1335 35 1 8.0316 2.7215 2.1411 36 1 9.2697 2.6572 0.0149 37 1 7.3451 3.7877 -3.9878 38 1 8.0351 2.2079 -4.4312 39 1 6.4940 2.2886 -3.5442 40 1 10.0557 3.1312 -3.2891 41 1 10.0524 3.1315 -1.5091 42 1 12.0700 1.5800 -2.3945 43 1 14.9897 -0.0371 -2.3888 44 1 5.5748 2.8514 -2.1306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934168149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:46 Heat of formation + Delta-G solvation = -87.802317 kcal Electronic energy + Delta-G solvation = -26307.576732 eV Core-core repulsion = 22418.279134 eV Total energy + Delta-G solvation = -3889.297598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61267 -39.46609 -38.08978 -36.74847 -35.68986 -33.84780 -32.79685 -31.81733 -31.27920 -30.01191 -28.73215 -27.50120 -25.36627 -24.12681 -23.61239 -21.92395 -21.19868 -20.32687 -19.01602 -17.87641 -17.77993 -17.16058 -16.82081 -16.19401 -16.09928 -15.59630 -15.26394 -14.62512 -14.50649 -14.21863 -13.90388 -13.74782 -13.57965 -13.49157 -13.30651 -13.17463 -12.79721 -12.43188 -12.28814 -12.14169 -11.92451 -11.81143 -11.74657 -11.54038 -11.43673 -11.15669 -11.04933 -10.70015 -10.57609 -10.49850 -10.34300 -10.23133 -9.69509 -9.52058 -8.54369 -8.40631 -7.97250 -6.89755 -6.41699 -3.82817 1.56866 1.92576 2.19669 2.65776 3.15991 3.26781 3.33725 3.42219 3.87501 4.15136 4.20398 4.55567 4.67298 4.70916 4.84480 4.90444 5.03109 5.03332 5.17058 5.21177 5.29292 5.40967 5.45033 5.48117 5.49519 5.61581 5.63071 5.67460 5.72879 5.77887 5.89197 6.03257 6.08045 6.20180 6.27826 6.36192 6.59366 6.74321 6.88840 7.13221 7.54648 7.55336 7.73481 7.83457 8.06045 8.60815 9.18007 9.52926 10.04715 10.75219 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002700 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.819617 B =10367.021624 C =11096.617338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.487 6.487 6 C -0.067 4.067 7 C -0.041 4.041 8 C -0.171 4.171 9 C -0.071 4.071 10 C -0.184 4.184 11 C 0.237 3.763 12 N -0.605 5.605 13 C 0.101 3.899 14 C 0.110 3.890 15 C 0.417 3.583 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.297 4.297 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.183 4.183 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 9.738 3.992 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.298 3.702 5 O -0.372 6.372 6 C -0.104 4.104 7 C -0.042 4.042 8 C -0.191 4.191 9 C -0.089 4.089 10 C -0.207 4.207 11 C 0.134 3.866 12 N -0.313 5.313 13 C -0.042 4.042 14 C -0.017 4.017 15 C 0.201 3.799 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.755 3.245 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.205 4.205 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.606 8.789 3.789 22.720 hybrid contribution 0.955 -0.863 -0.068 1.289 sum -19.651 7.926 3.721 21.514 Atomic orbital electron populations 1.21800 0.92714 1.02928 1.03388 1.23008 0.95184 0.80372 1.02784 1.86481 1.24873 1.32332 1.84574 1.23738 0.80347 0.92957 0.73198 1.90772 1.60124 1.42877 1.43413 1.20273 0.92857 0.91094 1.06192 1.18811 0.91972 0.99923 0.93462 1.20569 0.94282 1.07762 0.96484 1.20768 0.93841 0.97111 0.97208 1.20740 0.99991 1.08703 0.91217 1.17676 0.90782 0.92227 0.85887 1.45922 1.04129 1.78175 1.03050 1.21550 0.97321 0.99986 0.85371 1.21245 0.80646 0.96314 1.03499 1.20593 0.83586 0.90742 0.84974 1.90560 1.51376 1.49338 1.54965 1.41909 1.05129 1.08663 1.64339 1.19741 0.91885 0.83721 1.47340 0.88005 1.25255 0.95493 0.99841 0.97347 1.69613 1.01489 1.32460 1.50710 0.85816 0.78733 0.82198 0.77719 1.19251 1.20743 1.20705 1.20343 0.92160 1.10579 0.97450 0.91515 0.90302 0.91551 0.91187 0.91246 0.87085 0.86959 0.87008 0.86306 0.86069 0.93693 0.91468 0.91745 0.89227 0.89138 0.77487 0.91922 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.05 10.22 -39.24 -0.40 -4.45 16 4 C 0.46 5.91 7.95 36.00 0.29 6.20 16 5 O -0.49 -8.48 15.78 -18.76 -0.30 -8.77 16 6 C -0.07 -0.68 5.94 -29.04 -0.17 -0.85 16 7 C -0.04 -0.57 4.37 -104.65 -0.46 -1.02 16 8 C -0.17 -2.40 9.70 -39.55 -0.38 -2.78 16 9 C -0.07 -1.07 10.04 -39.61 -0.40 -1.47 16 10 C -0.18 -3.18 9.21 -39.38 -0.36 -3.55 16 11 C 0.24 4.14 6.55 -83.78 -0.55 3.59 16 12 N -0.60 -10.45 2.50 -181.00 -0.45 -10.90 16 13 C 0.10 1.45 10.19 59.85 0.61 2.06 16 14 C 0.11 1.96 5.64 -5.19 -0.03 1.93 16 15 C 0.42 9.94 7.85 -10.99 -0.09 9.85 16 16 O -0.58 -16.31 16.01 5.54 0.09 -16.22 16 17 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 22 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.18 -2.83 8.86 -39.38 -0.35 -3.18 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.11 0.87 8.08 -51.92 -0.42 0.45 16 33 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 2.11 6.14 -52.49 -0.32 1.79 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 40 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.09 1.45 6.20 -51.93 -0.32 1.13 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.12 1.62 6.14 -52.49 -0.32 1.30 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -35.73 376.98 -7.44 -43.17 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.18 Total: 10.35 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.52 Total: 2.97 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.21 Total: -49.09 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.61 Total: -29.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.73 -7.44 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934168149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.633 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds