Wall clock time and date at job start Tue Mar 31 2020 13:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47225 * 180.02562 * 6 4 3 8 8 C 1.38308 * 119.96025 * 269.72117 * 7 6 4 9 9 C 1.38264 * 120.14963 * 179.72892 * 8 7 6 10 10 C 1.38127 * 120.07392 * 0.54482 * 9 8 7 11 11 C 1.38891 * 119.92208 * 359.73254 * 10 9 8 12 12 N 1.39678 * 120.07413 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00313 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99630 * 359.97200 * 12 11 10 15 15 C 1.50699 * 109.46945 * 90.00603 * 14 12 11 16 16 O 1.21296 * 119.99930 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00253 * 180.02562 * 15 14 12 18 18 C 1.37094 * 119.99937 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00351 * 359.97438 * 18 17 15 20 20 C 1.38959 * 119.99484 * 179.97438 * 18 17 15 21 21 N 1.31407 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99628 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47218 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46961 * 119.99995 * 22 20 18 25 25 H 1.48499 * 109.47108 * 240.00032 * 22 20 18 26 26 C 1.38081 * 119.96311 * 90.00053 * 7 6 4 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 30 30 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 32 32 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 33 33 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 34 34 H 1.08003 * 119.92319 * 359.97438 * 8 7 6 35 35 H 1.07996 * 119.96249 * 180.27662 * 9 8 7 36 36 H 1.07997 * 120.03831 * 179.75158 * 10 9 8 37 37 H 1.09000 * 109.47074 * 89.99396 * 13 12 11 38 38 H 1.08996 * 109.46842 * 209.99968 * 13 12 11 39 39 H 1.09001 * 109.46586 * 329.99607 * 13 12 11 40 40 H 1.09001 * 109.46971 * 210.00075 * 14 12 11 41 41 H 1.09000 * 109.47621 * 330.00339 * 14 12 11 42 42 H 0.96995 * 119.99463 * 359.97438 * 17 15 14 43 43 H 0.96999 * 119.99564 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03950 * 359.97072 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4255 2.8587 0.0010 8 6 6.1156 2.8279 1.1992 9 6 7.4961 2.7499 1.2037 10 6 8.1912 2.7140 0.0107 11 6 7.5016 2.7506 -1.1944 12 7 8.2013 2.7139 -2.4027 13 6 7.4723 2.7520 -3.6728 14 6 9.6643 2.6372 -2.3998 15 6 10.0916 1.1921 -2.3989 16 8 9.2562 0.3127 -2.4000 17 7 11.4020 0.8768 -2.3957 18 6 11.7906 -0.4379 -2.3954 19 1 11.0469 -1.2209 -2.3972 20 6 13.1417 -0.7630 -2.3927 21 7 14.0466 0.1898 -2.3910 22 14 13.6713 -2.5543 -2.3916 23 1 12.4690 -3.4260 -2.3932 24 1 14.4853 -2.8306 -3.6025 25 1 14.4805 -2.8304 -1.1775 26 6 6.1141 2.8232 -1.1953 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.5850 3.4699 -0.8889 33 1 3.5843 3.4695 0.8911 34 1 5.5748 2.8607 2.1335 35 1 8.0316 2.7215 2.1411 36 1 9.2697 2.6572 0.0149 37 1 7.3451 3.7877 -3.9878 38 1 8.0351 2.2079 -4.4312 39 1 6.4940 2.2886 -3.5442 40 1 10.0557 3.1312 -3.2891 41 1 10.0524 3.1315 -1.5091 42 1 12.0700 1.5800 -2.3945 43 1 14.9897 -0.0371 -2.3888 44 1 5.5748 2.8514 -2.1306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934168149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:45 Heat of formation + Delta-G solvation = -110.146972 kcal Electronic energy + Delta-G solvation = -26308.545669 eV Core-core repulsion = 22418.279134 eV Total energy + Delta-G solvation = -3890.266535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62602 -40.79034 -39.76944 -37.80229 -37.00288 -35.88931 -33.81796 -33.33749 -32.53998 -31.30766 -29.95376 -28.68555 -27.02303 -25.67937 -24.39820 -22.95220 -22.36261 -21.67836 -20.65496 -19.86270 -18.74500 -18.38441 -17.91348 -17.74385 -17.14773 -16.86710 -16.60364 -16.40646 -15.75783 -15.61951 -15.32871 -15.17650 -14.92048 -14.62483 -14.44057 -14.17387 -13.97098 -13.58435 -13.55710 -13.26817 -13.18278 -13.05655 -12.90551 -12.76019 -12.70117 -12.50120 -12.45886 -12.25923 -12.16223 -11.74029 -11.58023 -11.55220 -11.53260 -11.00363 -10.27677 -10.04703 -9.69275 -8.51990 -8.15374 -5.98976 0.42559 0.74478 1.21307 1.32231 1.37691 1.51670 1.77019 2.00008 2.13708 2.30567 2.99426 3.15643 3.28791 3.59765 3.91946 3.98208 4.00195 4.07129 4.09812 4.23976 4.27765 4.34577 4.35040 4.41915 4.47638 4.53374 4.61652 4.66018 4.73999 4.85182 4.88884 4.92641 4.95378 5.08884 5.16207 5.36748 5.38796 5.48400 5.60989 5.72529 5.91784 6.01146 6.30472 6.56989 6.60651 6.77010 7.09660 7.52079 8.08618 8.66786 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002700 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.819617 B =10367.021624 C =11096.617338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.460 3.540 5 O -0.541 6.541 6 C -0.062 4.062 7 C -0.042 4.042 8 C -0.173 4.173 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.210 3.790 12 N -0.615 5.615 13 C 0.098 3.902 14 C 0.123 3.877 15 C 0.416 3.584 16 O -0.627 6.627 17 N -0.570 5.570 18 C -0.333 4.333 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.990 3.010 23 H -0.278 1.278 24 H -0.267 1.267 25 H -0.269 1.269 26 C -0.192 4.192 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.398 0.602 43 H 0.279 0.721 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 11.024 4.399 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.304 3.696 5 O -0.431 6.431 6 C -0.099 4.099 7 C -0.043 4.043 8 C -0.193 4.193 9 C -0.099 4.099 10 C -0.236 4.236 11 C 0.108 3.892 12 N -0.324 5.324 13 C -0.044 4.044 14 C -0.005 4.005 15 C 0.202 3.798 16 O -0.514 6.514 17 N -0.208 5.208 18 C -0.462 4.462 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.814 3.186 23 H -0.203 1.203 24 H -0.192 1.192 25 H -0.194 1.194 26 C -0.214 4.214 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.232 0.768 43 H 0.088 0.912 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.159 10.128 4.197 24.723 hybrid contribution 1.322 -1.265 -0.147 1.836 sum -20.837 8.863 4.051 23.003 Atomic orbital electron populations 1.21806 0.89953 1.04264 1.03999 1.23243 0.97329 0.79600 1.02049 1.86491 1.23884 1.33185 1.83912 1.24262 0.80491 0.93352 0.71461 1.90766 1.61304 1.44764 1.46227 1.20423 0.90095 0.89903 1.09441 1.19224 0.94151 0.98103 0.92782 1.20975 0.93972 1.06431 0.97913 1.21072 0.94807 0.96720 0.97261 1.20848 0.99672 1.10679 0.92384 1.17995 0.91848 0.93359 0.85953 1.46091 1.03825 1.78500 1.03958 1.21698 0.96689 1.01986 0.84019 1.21180 0.81688 0.91844 1.05779 1.21769 0.82462 0.93113 0.82421 1.90520 1.52498 1.51722 1.56644 1.41957 1.06039 1.07932 1.64871 1.19608 0.92075 0.84540 1.50016 0.91060 1.25995 0.94933 1.03869 0.96259 1.69660 1.01939 1.33968 1.50145 0.84922 0.77970 0.77186 0.78553 1.20333 1.19217 1.19424 1.20639 0.91578 1.10349 0.98882 0.90995 0.88638 0.90772 0.92259 0.91833 0.84067 0.83316 0.84232 0.84605 0.87403 0.90149 0.92740 0.91805 0.86071 0.87401 0.76793 0.91189 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.94 6.19 71.98 0.45 1.38 16 3 O -0.36 -7.30 10.22 -51.35 -0.52 -7.82 16 4 C 0.46 11.20 7.95 71.23 0.57 11.76 16 5 O -0.54 -18.86 15.78 21.94 0.35 -18.51 16 6 C -0.06 -1.07 5.94 29.10 0.17 -0.90 16 7 C -0.04 -1.08 4.37 -19.88 -0.09 -1.17 16 8 C -0.17 -4.57 9.70 22.29 0.22 -4.35 16 9 C -0.08 -2.40 10.04 22.25 0.22 -2.18 16 10 C -0.21 -7.52 9.21 22.40 0.21 -7.31 16 11 C 0.21 7.37 6.55 38.21 0.25 7.62 16 12 N -0.61 -21.17 2.50 -726.55 -1.81 -22.99 16 13 C 0.10 2.76 10.19 127.77 1.30 4.07 16 14 C 0.12 4.37 5.64 85.63 0.48 4.85 16 15 C 0.42 20.49 7.85 87.66 0.69 21.18 16 16 O -0.63 -36.96 16.01 -3.08 -0.05 -37.01 16 17 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 18 C -0.33 -19.47 9.68 84.04 0.81 -18.65 16 19 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 20 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 21 N -0.92 -49.82 13.05 21.67 0.28 -49.54 16 22 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C -0.19 -5.77 8.86 22.40 0.20 -5.58 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.14 1.65 8.08 -2.38 -0.02 1.63 16 33 H 0.15 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.11 3.93 6.14 -2.91 -0.02 3.91 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 39 H 0.06 1.76 6.20 -2.39 -0.01 1.75 16 40 H 0.12 3.53 8.07 -2.39 -0.02 3.51 16 41 H 0.11 3.47 6.20 -2.39 -0.01 3.45 16 42 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 43 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.13 3.44 6.14 -2.91 -0.02 3.42 16 Total: -1.00 -80.68 376.98 5.62 -75.06 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.29 Total: 36.35 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.69 Total: 9.82 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.15 Total: -104.04 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: -0.23 Total: -63.35 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -80.68 5.62 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934168149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.088 kcal (2) G-P(sol) polarization free energy of solvation -80.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds