Wall clock time and date at job start Tue Mar 31 2020 12:22:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46499 * 109.46899 * 2 1
4 4 C 1.34780 * 119.99797 * 95.86232 * 3 2 1
5 5 O 1.21602 * 119.99799 * 184.31624 * 4 3 2
6 6 C 1.47519 * 120.00079 * 4.31572 * 4 3 2
7 7 C 1.41861 * 120.25319 * 84.00748 * 6 4 3
8 8 C 1.50697 * 120.57362 * 0.02562 * 7 6 4
9 9 C 1.35962 * 118.86263 * 180.02562 * 7 6 4
10 10 C 1.40851 * 119.33618 * 0.02562 * 9 7 6
11 11 O 1.21850 * 119.75600 * 180.02562 * 10 9 7
12 12 O 1.34372 * 120.48684 * 359.97438 * 10 9 7
13 13 C 1.33724 * 121.21143 * 0.02562 * 12 10 9
14 14 C 1.50700 * 119.69621 * 179.71912 * 13 12 10
15 15 C 1.46500 * 120.00280 * 275.86180 * 3 2 1
16 16 C 1.53947 * 113.74142 * 221.51577 * 15 3 2
17 17 N 1.47818 * 86.03749 * 222.08281 * 16 15 3
18 18 C 1.36932 * 134.46272 * 204.64769 * 17 16 15
19 19 H 1.07994 * 120.00592 * 179.86593 * 18 17 16
20 20 C 1.38814 * 119.99703 * 359.86464 * 18 17 16
21 21 N 1.31624 * 120.00059 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 120.00310 * 180.02562 * 20 18 17
23 23 H 1.48496 * 109.47464 * 89.99594 * 22 20 18
24 24 H 1.48497 * 109.47159 * 209.99843 * 22 20 18
25 25 H 1.48504 * 109.46623 * 329.99525 * 22 20 18
26 26 C 1.47583 * 91.04940 * 24.54779 * 17 16 15
27 27 H 1.09004 * 109.47070 * 293.56922 * 1 2 3
28 28 H 1.08997 * 109.47972 * 53.56969 * 1 2 3
29 29 H 1.09003 * 109.47055 * 173.57661 * 1 2 3
30 30 H 1.09003 * 109.47083 * 240.00738 * 2 1 3
31 31 H 1.08993 * 109.47477 * 120.00286 * 2 1 3
32 32 H 1.09001 * 109.46773 * 270.02058 * 8 7 6
33 33 H 1.09004 * 109.46660 * 30.01493 * 8 7 6
34 34 H 1.08999 * 109.47498 * 150.01950 * 8 7 6
35 35 H 1.07995 * 120.33520 * 180.02562 * 9 7 6
36 36 H 1.09000 * 109.46494 * 1.01631 * 14 13 12
37 37 H 1.08998 * 109.47286 * 121.02058 * 14 13 12
38 38 H 1.08997 * 109.47205 * 241.02062 * 14 13 12
39 39 H 1.08998 * 112.94692 * 353.10868 * 15 3 2
40 40 H 1.08997 * 113.77314 * 336.34529 * 16 15 3
41 41 H 1.09003 * 113.77121 * 107.74879 * 16 15 3
42 42 H 0.96996 * 120.00409 * 180.02562 * 21 20 18
43 43 H 1.08996 * 113.77112 * 221.15194 * 26 17 16
44 44 H 1.09002 * 113.76998 * 89.75320 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3553 1.9768 1.1612
5 8 2.6855 3.1471 1.1707
6 6 2.3235 1.2090 2.4204
7 6 3.4314 0.4068 2.7965
8 6 4.6536 0.3277 1.9186
9 6 3.3716 -0.2894 3.9628
10 6 2.2164 -0.1970 4.7633
11 8 2.1549 -0.8174 5.8102
12 8 1.1821 0.5710 4.3814
13 6 1.2187 1.2645 3.2386
14 6 0.0367 2.1102 2.8403
15 6 2.1403 2.1151 -1.2621
16 6 3.4233 2.9594 -1.3665
17 7 2.5631 4.0074 -1.9555
18 6 2.7808 5.0675 -2.7944
19 1 1.9578 5.7027 -3.0868
20 6 4.0595 5.3258 -3.2690
21 7 5.0625 4.5514 -2.9130
22 14 4.3568 6.7724 -4.4128
23 1 4.6794 7.9797 -3.6105
24 1 5.4919 6.4621 -5.3185
25 1 3.1354 7.0253 -5.2186
26 6 1.3754 3.4510 -1.2787
27 1 -0.3633 0.4109 0.9420
28 1 -0.3635 0.6102 -0.8268
29 1 -0.3633 -1.0212 -0.1150
30 1 1.8933 -0.5137 -0.8901
31 1 1.8934 -0.5138 0.8899
32 1 4.5382 -0.4910 1.2082
33 1 4.7725 1.2655 1.3759
34 1 5.5341 0.1512 2.5364
35 1 4.2016 -0.9072 4.2724
36 1 -0.7331 2.0437 3.6092
37 1 0.3525 3.1477 2.7311
38 1 -0.3644 1.7509 1.8927
39 1 1.9530 1.4914 -2.1361
40 1 3.8495 3.2323 -0.4012
41 1 4.1608 2.5542 -2.0594
42 1 5.9561 4.7320 -3.2443
43 1 0.4810 3.4375 -1.9014
44 1 1.1988 3.8685 -0.2874
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000950821247.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:15
Heat of formation + Delta-G solvation = -28.895672 kcal
Electronic energy + Delta-G solvation = -28390.419466 eV
Core-core repulsion = 24503.676251 eV
Total energy + Delta-G solvation = -3886.743214 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.30809 -41.55628 -39.23166 -38.65920 -37.07609 -36.50335 -34.22349 -33.68445
-31.31688 -29.96111 -29.70952 -28.60559 -26.52154 -25.96753 -24.93926 -24.15750
-23.09726 -22.14832 -20.77373 -19.43084 -18.72785 -18.42722 -18.17279 -17.78325
-17.20238 -16.85912 -16.58034 -16.06169 -15.63832 -15.24878 -15.18190 -15.13267
-14.60331 -14.49225 -14.43950 -14.39011 -14.09735 -13.88511 -13.66668 -13.50178
-13.40252 -13.33918 -12.96813 -12.82356 -12.76097 -12.65289 -12.41802 -11.99103
-11.91132 -11.81575 -11.53190 -11.47819 -11.43823 -11.02667 -10.57882 -9.55788
-9.50558 -8.83708 -7.87960 -5.20021 -0.70891 0.16796 1.04119 1.45326
1.47099 1.48016 1.56243 1.86447 2.06478 2.50980 2.98843 3.12912
3.31517 3.41958 3.54309 3.62925 3.87516 3.97863 4.04455 4.18030
4.29003 4.29608 4.38477 4.43696 4.54394 4.60312 4.63634 4.65337
4.70681 4.84139 4.88802 4.92484 5.03956 5.07011 5.09393 5.13532
5.29341 5.31907 5.45443 5.54780 5.90373 5.90899 5.96200 6.27095
6.42788 6.94722 7.14734 7.63584 8.60403 9.29180
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.021934 B = 0.003585 C = 0.003431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1276.262356 B = 7809.101701 C = 8157.823734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.095 3.905
3 N -0.584 5.584
4 C 0.579 3.421
5 O -0.550 6.550
6 C -0.261 4.261
7 C 0.067 3.933
8 C -0.132 4.132
9 C -0.276 4.276
10 C 0.495 3.505
11 O -0.515 6.515
12 O -0.257 6.257
13 C 0.196 3.804
14 C -0.128 4.128
15 C 0.128 3.872
16 C 0.152 3.848
17 N -0.634 5.634
18 C -0.232 4.232
19 H 0.083 0.917
20 C -0.067 4.067
21 N -0.952 5.952
22 Si 0.978 3.022
23 H -0.292 1.292
24 H -0.292 1.292
25 H -0.265 1.265
26 C 0.114 3.886
27 H 0.058 0.942
28 H 0.061 0.939
29 H 0.089 0.911
30 H 0.098 0.902
31 H 0.085 0.915
32 H 0.113 0.887
33 H 0.053 0.947
34 H 0.104 0.896
35 H 0.183 0.817
36 H 0.117 0.883
37 H 0.099 0.901
38 H 0.121 0.879
39 H 0.131 0.869
40 H 0.030 0.970
41 H 0.036 0.964
42 H 0.247 0.753
43 H 0.059 0.941
44 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.612 -14.686 8.814 19.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.027 4.027
3 N -0.315 5.315
4 C 0.366 3.634
5 O -0.428 6.428
6 C -0.266 4.266
7 C 0.065 3.935
8 C -0.188 4.188
9 C -0.295 4.295
10 C 0.350 3.650
11 O -0.408 6.408
12 O -0.166 6.166
13 C 0.146 3.854
14 C -0.183 4.183
15 C 0.024 3.976
16 C 0.026 3.974
17 N -0.360 5.360
18 C -0.360 4.360
19 H 0.101 0.899
20 C -0.260 4.260
21 N -0.601 5.601
22 Si 0.806 3.194
23 H -0.220 1.220
24 H -0.218 1.218
25 H -0.189 1.189
26 C -0.012 4.012
27 H 0.076 0.924
28 H 0.080 0.920
29 H 0.108 0.892
30 H 0.116 0.884
31 H 0.103 0.897
32 H 0.131 0.869
33 H 0.072 0.928
34 H 0.123 0.877
35 H 0.200 0.800
36 H 0.136 0.864
37 H 0.118 0.882
38 H 0.138 0.862
39 H 0.148 0.852
40 H 0.048 0.952
41 H 0.055 0.945
42 H 0.056 0.944
43 H 0.077 0.923
44 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -9.478 -14.175 9.216 19.382
hybrid contribution 0.882 1.162 -0.418 1.517
sum -8.596 -13.013 8.798 17.906
Atomic orbital electron populations
1.22325 0.94348 1.03845 1.02558 1.21914 0.95813 0.80459 1.04502
1.48058 1.63391 1.15051 1.05021 1.17755 0.76844 0.85676 0.83165
1.90917 1.47672 1.17749 1.86435 1.19810 0.97563 1.09115 1.00066
1.20423 0.93518 0.86547 0.92982 1.21128 0.94270 1.03787 0.99584
1.22261 1.00587 1.09821 0.96832 1.19568 0.81806 0.77348 0.86231
1.90982 1.80463 1.43879 1.25489 1.83393 1.46020 1.50597 1.36544
1.23059 0.95523 0.86712 0.80121 1.21448 0.93364 0.98224 1.05229
1.23464 0.97058 0.91421 0.85695 1.22578 0.93184 0.86527 0.95128
1.46074 1.06272 1.32156 1.51512 1.19398 0.94086 1.04211 1.18338
0.89943 1.25607 0.95335 1.02110 1.02928 1.70019 0.99518 1.41059
1.49511 0.85091 0.77593 0.78561 0.78173 1.21961 1.21846 1.18927
1.23002 0.91293 0.91338 0.95520 0.92355 0.92026 0.89199 0.88378
0.89663 0.86865 0.92763 0.87733 0.79969 0.86416 0.88227 0.86150
0.85167 0.95234 0.94542 0.94413 0.92324 0.94343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.11 10.23 71.98 0.74 -1.38 16
2 C 0.09 1.49 6.10 86.38 0.53 2.02 16
3 N -0.58 -14.87 2.73 -807.23 -2.21 -17.08 16
4 C 0.58 16.98 4.10 86.69 0.36 17.34 16
5 O -0.55 -22.39 12.82 -4.04 -0.05 -22.45 16
6 C -0.26 -6.09 3.88 -20.09 -0.08 -6.16 16
7 C 0.07 1.38 5.38 -19.50 -0.10 1.28 16
8 C -0.13 -2.48 9.67 71.23 0.69 -1.79 16
9 C -0.28 -5.54 9.64 22.38 0.22 -5.33 16
10 C 0.50 12.48 7.93 68.46 0.54 13.02 16
11 O -0.51 -16.23 17.93 18.74 0.34 -15.89 16
12 O -0.26 -5.90 9.80 25.87 0.25 -5.65 16
13 C 0.20 4.01 7.03 25.53 0.18 4.19 16
14 C -0.13 -1.98 9.18 71.24 0.65 -1.33 16
15 C 0.13 4.32 4.60 46.75 0.22 4.53 16
16 C 0.15 7.29 6.78 86.44 0.59 7.88 16
17 N -0.63 -33.04 3.70 -716.60 -2.65 -35.69 16
18 C -0.23 -13.26 10.70 84.03 0.90 -12.36 16
19 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16
20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16
21 N -0.95 -58.40 11.39 21.65 0.25 -58.15 16
22 Si 0.98 46.36 29.55 68.60 2.03 48.39 16
23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16
24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16
26 C 0.11 4.56 8.28 86.49 0.72 5.28 16
27 H 0.06 0.68 5.27 -2.38 -0.01 0.67 16
28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
30 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16
31 H 0.09 1.18 6.17 -2.39 -0.01 1.17 16
32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16
33 H 0.05 1.43 7.18 -2.39 -0.02 1.41 16
34 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16
35 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16
36 H 0.12 1.26 8.13 -2.39 -0.02 1.24 16
37 H 0.10 1.87 8.11 -2.39 -0.02 1.85 16
38 H 0.12 1.59 5.30 -2.39 -0.01 1.57 16
39 H 0.13 3.84 8.04 -2.39 -0.02 3.82 16
40 H 0.03 1.59 5.57 -2.39 -0.01 1.58 16
41 H 0.04 1.94 7.16 -2.39 -0.02 1.93 16
42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
44 H 0.04 1.63 6.44 -2.39 -0.02 1.61 16
Total: -1.00 -79.45 358.58 5.58 -73.87
By element:
Atomic # 1 Polarization: 7.84 SS G_CDS: 1.03 Total: 8.87 kcal
Atomic # 6 Polarization: 17.19 SS G_CDS: 6.60 Total: 23.79 kcal
Atomic # 7 Polarization: -106.31 SS G_CDS: -4.61 Total: -110.92 kcal
Atomic # 8 Polarization: -44.53 SS G_CDS: 0.54 Total: -43.99 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal
Total: -79.45 5.58 -73.87 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000950821247.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.974 kcal
(2) G-P(sol) polarization free energy of solvation -79.449 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds