Wall clock time and date at job start Tue Mar 31 2020 12:10:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47836 * 2 1
4 4 C 1.50708 * 109.47212 * 239.99803 * 2 1 3
5 5 O 1.21281 * 119.99925 * 274.69464 * 4 2 1
6 6 N 1.34770 * 119.99955 * 94.69176 * 4 2 1
7 7 C 1.46891 * 120.46325 * 174.56006 * 6 4 2
8 8 C 1.53358 * 108.74248 * 124.34437 * 7 6 4
9 9 C 1.52557 * 109.12468 * 52.26389 * 8 7 6
10 10 C 1.52955 * 114.06669 * 75.54183 * 9 8 7
11 11 N 1.47157 * 87.85463 * 139.44000 * 10 9 8
12 12 C 1.36941 * 135.99871 * 153.07904 * 11 10 9
13 13 H 1.07999 * 120.00134 * 0.02562 * 12 11 10
14 14 C 1.38811 * 119.99819 * 179.97438 * 12 11 10
15 15 N 1.31620 * 119.99885 * 0.02562 * 14 12 11
16 16 Si 1.86805 * 119.99967 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.46868 * 60.00434 * 16 14 12
18 18 H 1.48503 * 109.47033 * 180.02562 * 16 14 12
19 19 H 1.48496 * 109.47088 * 300.00130 * 16 14 12
20 20 C 1.47165 * 87.99971 * 333.33489 * 11 10 9
21 21 C 1.52553 * 113.42894 * 302.66346 * 9 8 7
22 22 C 1.46891 * 120.46534 * 354.53836 * 6 4 2
23 23 C 1.53000 * 109.46961 * 120.00007 * 2 1 3
24 24 F 1.39902 * 109.47391 * 179.97438 * 23 2 1
25 25 F 1.39898 * 109.47049 * 299.99761 * 23 2 1
26 26 F 1.39902 * 109.47087 * 59.99835 * 23 2 1
27 27 H 1.09004 * 109.46999 * 64.99020 * 1 2 3
28 28 H 1.08996 * 109.47245 * 184.99082 * 1 2 3
29 29 H 1.09000 * 109.47099 * 304.99871 * 1 2 3
30 30 H 1.08998 * 109.59411 * 4.56275 * 7 6 4
31 31 H 1.09012 * 109.59254 * 244.12246 * 7 6 4
32 32 H 1.08997 * 109.53007 * 292.36244 * 8 7 6
33 33 H 1.09001 * 109.58162 * 172.18697 * 8 7 6
34 34 H 1.08998 * 113.49304 * 24.68676 * 10 9 8
35 35 H 1.09008 * 113.48937 * 254.18665 * 10 9 8
36 36 H 0.96998 * 119.99649 * 179.97438 * 15 14 12
37 37 H 1.08996 * 113.48800 * 141.41926 * 20 11 10
38 38 H 1.09002 * 113.48892 * 271.92440 * 20 11 10
39 39 H 1.09008 * 109.52670 * 177.22044 * 21 9 8
40 40 H 1.08998 * 109.52943 * 297.42927 * 21 9 8
41 41 H 1.09007 * 109.58608 * 355.42294 * 22 6 4
42 42 H 1.09001 * 109.59198 * 115.86298 * 22 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2305
5 8 2.1535 -1.9172 -1.2270
6 7 2.3470 -0.0049 -2.3348
7 6 2.9489 -0.6706 -3.4976
8 6 2.0821 -0.3879 -4.7307
9 6 1.8630 1.1169 -4.8532
10 6 3.0787 1.8836 -5.3764
11 7 2.1515 2.6945 -6.1816
12 6 2.1484 3.9606 -6.7034
13 1 2.9936 4.6132 -6.5419
14 6 1.0595 4.4047 -7.4408
15 7 0.0297 3.6090 -7.6380
16 14 1.0550 6.1320 -8.1520
17 1 2.2041 6.2884 -9.0795
18 1 -0.2128 6.3597 -8.8910
19 1 1.1697 7.1212 -7.0504
20 6 1.2262 1.5501 -6.1745
21 6 1.2196 1.7388 -3.6177
22 6 2.0924 1.4406 -2.3926
23 6 2.0399 -0.7213 1.2493
24 9 3.4390 -0.7218 1.2490
25 9 1.5736 -0.0617 2.3915
26 9 1.5735 -2.0402 1.2493
27 1 -0.3633 0.4345 -0.9313
28 1 -0.3633 -1.0237 0.0894
29 1 -0.3633 0.5894 0.8418
30 1 2.9937 -1.7453 -3.3209
31 1 3.9545 -0.2827 -3.6609
32 1 1.1200 -0.8886 -4.6223
33 1 2.5862 -0.7566 -5.6240
34 1 3.7534 1.2719 -5.9753
35 1 3.5975 2.4537 -4.6057
36 1 -0.7314 3.9195 -8.1530
37 1 0.1794 1.8385 -6.0784
38 1 1.3976 0.8478 -6.9902
39 1 1.1380 2.8173 -3.7532
40 1 0.2271 1.3130 -3.4704
41 1 1.5727 1.7566 -1.4880
42 1 3.0384 1.9752 -2.4788
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035769034.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:43
Heat of formation + Delta-G solvation = -130.775138 kcal
Electronic energy + Delta-G solvation = -28569.103992 eV
Core-core repulsion = 24136.086212 eV
Total energy + Delta-G solvation = -4433.017780 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-50.26857 -47.80466 -47.65419 -40.63547 -39.01829 -35.95554 -34.40213 -32.53474
-31.05859 -30.47687 -27.10762 -26.69992 -25.03607 -24.39725 -23.42874 -22.72877
-21.28362 -19.83035 -18.98826 -18.58017 -17.76557 -17.41621 -16.91716 -16.73101
-15.68610 -15.21702 -14.91490 -14.79545 -14.64611 -14.56794 -14.15526 -14.04119
-13.89557 -13.85988 -13.80937 -13.75890 -13.43999 -13.29530 -12.75164 -12.61130
-12.33164 -12.24628 -12.17868 -11.76015 -11.63708 -11.13113 -11.09493 -10.93466
-10.88198 -10.51597 -10.35870 -9.89935 -9.77844 -9.68501 -9.27780 -8.84687
-8.57780 -6.91710 -5.81199 -3.13401 2.13521 2.49075 2.84737 3.35468
3.40138 3.41303 3.48028 3.78821 3.80243 4.30742 4.41437 4.53565
4.58893 4.86544 4.94770 5.04063 5.18786 5.23030 5.27398 5.33376
5.40394 5.51336 5.56215 5.67473 5.74407 5.77871 5.89540 6.05437
6.19839 6.28556 6.38209 6.50135 6.54144 6.72252 6.74292 7.17164
7.23138 7.29728 7.51426 7.89659 7.93303 8.99442 9.66204 10.60651
11.36057
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.025982 B = 0.003073 C = 0.002945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1077.402797 B = 9109.939414 C = 9503.911636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.166 4.166
3 H 0.135 0.865
4 C 0.522 3.478
5 O -0.527 6.527
6 N -0.596 5.596
7 C 0.115 3.885
8 C -0.114 4.114
9 C -0.117 4.117
10 C 0.127 3.873
11 N -0.608 5.608
12 C -0.219 4.219
13 H 0.079 0.921
14 C -0.006 4.006
15 N -0.920 5.920
16 Si 0.911 3.089
17 H -0.286 1.286
18 H -0.290 1.290
19 H -0.284 1.284
20 C 0.167 3.833
21 C -0.093 4.093
22 C 0.101 3.899
23 C 0.470 3.530
24 F -0.181 7.181
25 F -0.181 7.181
26 F -0.165 7.165
27 H 0.087 0.913
28 H 0.078 0.922
29 H 0.082 0.918
30 H 0.090 0.910
31 H 0.071 0.929
32 H 0.064 0.936
33 H 0.076 0.924
34 H 0.031 0.969
35 H 0.036 0.964
36 H 0.254 0.746
37 H 0.070 0.930
38 H 0.024 0.976
39 H 0.091 0.909
40 H 0.062 0.938
41 H 0.080 0.920
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.206 -7.310 16.343 18.039
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.188 4.188
3 H 0.153 0.847
4 C 0.307 3.693
5 O -0.404 6.404
6 N -0.328 5.328
7 C -0.007 4.007
8 C -0.153 4.153
9 C -0.118 4.118
10 C 0.001 3.999
11 N -0.333 5.333
12 C -0.346 4.346
13 H 0.097 0.903
14 C -0.203 4.203
15 N -0.566 5.566
16 Si 0.741 3.259
17 H -0.212 1.212
18 H -0.216 1.216
19 H -0.211 1.211
20 C 0.041 3.959
21 C -0.132 4.132
22 C -0.022 4.022
23 C 0.415 3.585
24 F -0.162 7.162
25 F -0.162 7.162
26 F -0.147 7.147
27 H 0.106 0.894
28 H 0.097 0.903
29 H 0.101 0.899
30 H 0.108 0.892
31 H 0.089 0.911
32 H 0.083 0.917
33 H 0.094 0.906
34 H 0.048 0.952
35 H 0.054 0.946
36 H 0.064 0.936
37 H 0.088 0.912
38 H 0.042 0.958
39 H 0.110 0.890
40 H 0.081 0.919
41 H 0.099 0.901
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 2.153 -7.660 16.151 18.005
hybrid contribution 0.138 0.977 -0.480 1.097
sum 2.292 -6.683 15.672 17.191
Atomic orbital electron populations
1.21804 0.88764 1.04914 1.05011 1.22700 1.01914 1.02798 0.91417
0.84734 1.19686 0.78171 0.87395 0.84023 1.90776 1.53225 1.13286
1.83089 1.48044 1.60789 1.09427 1.14535 1.21705 0.96268 0.98531
0.84157 1.21734 1.00035 0.96566 0.96918 1.22092 1.00114 0.92560
0.97036 1.22396 0.92498 0.91920 0.93108 1.45567 1.16667 1.09285
1.61818 1.18871 1.02120 0.86578 1.27037 0.90307 1.24768 0.96719
0.98274 1.00528 1.69814 1.07328 1.35267 1.44226 0.86227 0.76872
0.83900 0.78914 1.21221 1.21565 1.21075 1.22030 0.96954 0.87220
0.89672 1.21416 0.97394 1.02638 0.91702 1.22029 1.01021 0.79318
0.99785 1.19882 0.75600 0.78232 0.84756 1.93204 1.29801 1.96448
1.96742 1.93185 1.88510 1.80875 1.53664 1.93239 1.88145 1.36688
1.96602 0.89445 0.90304 0.89911 0.89210 0.91063 0.91700 0.90567
0.95174 0.94551 0.93612 0.91172 0.95829 0.89022 0.91928 0.90142
0.90529
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.19 8.85 37.16 0.33 -0.86 16
2 C -0.17 -1.61 1.92 -91.77 -0.18 -1.79 16
3 H 0.13 0.98 6.14 -51.93 -0.32 0.66 16
4 C 0.52 6.67 6.42 -10.98 -0.07 6.60 16
5 O -0.53 -8.48 14.76 5.56 0.08 -8.40 16
6 N -0.60 -7.26 2.94 -172.62 -0.51 -7.77 16
7 C 0.12 1.45 6.35 -3.64 -0.02 1.42 16
8 C -0.11 -1.57 5.30 -26.77 -0.14 -1.71 16
9 C -0.12 -1.92 0.84 -155.02 -0.13 -2.05 16
10 C 0.13 2.38 7.63 -8.22 -0.06 2.31 16
11 N -0.61 -14.62 3.55 -184.70 -0.66 -15.27 16
12 C -0.22 -5.86 10.74 -15.06 -0.16 -6.03 16
13 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16
15 N -0.92 -26.38 11.52 55.49 0.64 -25.74 16
16 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16
17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
20 C 0.17 3.66 6.54 -8.22 -0.05 3.61 16
21 C -0.09 -1.35 5.27 -26.78 -0.14 -1.49 16
22 C 0.10 1.12 6.08 -3.65 -0.02 1.10 16
23 C 0.47 5.25 2.57 37.16 0.10 5.35 16
24 F -0.18 -2.23 17.02 2.25 0.04 -2.19 16
25 F -0.18 -1.83 16.89 2.25 0.04 -1.80 16
26 F -0.17 -2.17 15.30 2.25 0.03 -2.13 16
27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16
29 H 0.08 0.52 7.94 -51.93 -0.41 0.11 16
30 H 0.09 1.17 6.97 -51.93 -0.36 0.81 16
31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16
32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16
34 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16
35 H 0.04 0.64 7.53 -51.92 -0.39 0.25 16
36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
37 H 0.07 1.73 7.11 -51.93 -0.37 1.36 16
38 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16
39 H 0.09 1.55 7.95 -51.92 -0.41 1.14 16
40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
41 H 0.08 0.68 5.47 -51.93 -0.28 0.39 16
42 H 0.08 0.84 7.60 -51.93 -0.39 0.45 16
LS Contribution 344.21 15.07 5.19 5.19
Total: -1.00 -31.38 344.21 -6.66 -38.04
By element:
Atomic # 1 Polarization: 3.30 SS G_CDS: -5.84 Total: -2.54 kcal
Atomic # 6 Polarization: 6.85 SS G_CDS: -0.65 Total: 6.20 kcal
Atomic # 7 Polarization: -48.25 SS G_CDS: -0.52 Total: -48.78 kcal
Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal
Atomic # 9 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.12 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -31.38 -6.66 -38.04 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035769034.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.733 kcal
(2) G-P(sol) polarization free energy of solvation -31.381 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds