Wall clock time and date at job start Tue Mar 31 2020 12:10:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47836 * 2 1
4 4 C 1.50708 * 109.47212 * 239.99803 * 2 1 3
5 5 O 1.21281 * 119.99925 * 274.69464 * 4 2 1
6 6 N 1.34770 * 119.99955 * 94.69176 * 4 2 1
7 7 C 1.46891 * 120.46325 * 174.56006 * 6 4 2
8 8 C 1.53358 * 108.74248 * 124.34437 * 7 6 4
9 9 C 1.52557 * 109.12468 * 52.26389 * 8 7 6
10 10 C 1.52955 * 114.06669 * 75.54183 * 9 8 7
11 11 N 1.47157 * 87.85463 * 139.44000 * 10 9 8
12 12 C 1.36941 * 135.99871 * 153.07904 * 11 10 9
13 13 H 1.07999 * 120.00134 * 0.02562 * 12 11 10
14 14 C 1.38811 * 119.99819 * 179.97438 * 12 11 10
15 15 N 1.31620 * 119.99885 * 0.02562 * 14 12 11
16 16 Si 1.86805 * 119.99967 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.46868 * 60.00434 * 16 14 12
18 18 H 1.48503 * 109.47033 * 180.02562 * 16 14 12
19 19 H 1.48496 * 109.47088 * 300.00130 * 16 14 12
20 20 C 1.47165 * 87.99971 * 333.33489 * 11 10 9
21 21 C 1.52553 * 113.42894 * 302.66346 * 9 8 7
22 22 C 1.46891 * 120.46534 * 354.53836 * 6 4 2
23 23 C 1.53000 * 109.46961 * 120.00007 * 2 1 3
24 24 F 1.39902 * 109.47391 * 179.97438 * 23 2 1
25 25 F 1.39898 * 109.47049 * 299.99761 * 23 2 1
26 26 F 1.39902 * 109.47087 * 59.99835 * 23 2 1
27 27 H 1.09004 * 109.46999 * 64.99020 * 1 2 3
28 28 H 1.08996 * 109.47245 * 184.99082 * 1 2 3
29 29 H 1.09000 * 109.47099 * 304.99871 * 1 2 3
30 30 H 1.08998 * 109.59411 * 4.56275 * 7 6 4
31 31 H 1.09012 * 109.59254 * 244.12246 * 7 6 4
32 32 H 1.08997 * 109.53007 * 292.36244 * 8 7 6
33 33 H 1.09001 * 109.58162 * 172.18697 * 8 7 6
34 34 H 1.08998 * 113.49304 * 24.68676 * 10 9 8
35 35 H 1.09008 * 113.48937 * 254.18665 * 10 9 8
36 36 H 0.96998 * 119.99649 * 179.97438 * 15 14 12
37 37 H 1.08996 * 113.48800 * 141.41926 * 20 11 10
38 38 H 1.09002 * 113.48892 * 271.92440 * 20 11 10
39 39 H 1.09008 * 109.52670 * 177.22044 * 21 9 8
40 40 H 1.08998 * 109.52943 * 297.42927 * 21 9 8
41 41 H 1.09007 * 109.58608 * 355.42294 * 22 6 4
42 42 H 1.09001 * 109.59198 * 115.86298 * 22 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2305
5 8 2.1535 -1.9172 -1.2270
6 7 2.3470 -0.0049 -2.3348
7 6 2.9489 -0.6706 -3.4976
8 6 2.0821 -0.3879 -4.7307
9 6 1.8630 1.1169 -4.8532
10 6 3.0787 1.8836 -5.3764
11 7 2.1515 2.6945 -6.1816
12 6 2.1484 3.9606 -6.7034
13 1 2.9936 4.6132 -6.5419
14 6 1.0595 4.4047 -7.4408
15 7 0.0297 3.6090 -7.6380
16 14 1.0550 6.1320 -8.1520
17 1 2.2041 6.2884 -9.0795
18 1 -0.2128 6.3597 -8.8910
19 1 1.1697 7.1212 -7.0504
20 6 1.2262 1.5501 -6.1745
21 6 1.2196 1.7388 -3.6177
22 6 2.0924 1.4406 -2.3926
23 6 2.0399 -0.7213 1.2493
24 9 3.4390 -0.7218 1.2490
25 9 1.5736 -0.0617 2.3915
26 9 1.5735 -2.0402 1.2493
27 1 -0.3633 0.4345 -0.9313
28 1 -0.3633 -1.0237 0.0894
29 1 -0.3633 0.5894 0.8418
30 1 2.9937 -1.7453 -3.3209
31 1 3.9545 -0.2827 -3.6609
32 1 1.1200 -0.8886 -4.6223
33 1 2.5862 -0.7566 -5.6240
34 1 3.7534 1.2719 -5.9753
35 1 3.5975 2.4537 -4.6057
36 1 -0.7314 3.9195 -8.1530
37 1 0.1794 1.8385 -6.0784
38 1 1.3976 0.8478 -6.9902
39 1 1.1380 2.8173 -3.7532
40 1 0.2271 1.3130 -3.4704
41 1 1.5727 1.7566 -1.4880
42 1 3.0384 1.9752 -2.4788
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035769034.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:42
Heat of formation + Delta-G solvation = -149.281122 kcal
Electronic energy + Delta-G solvation = -28569.906472 eV
Core-core repulsion = 24136.086212 eV
Total energy + Delta-G solvation = -4433.820260 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-51.13583 -48.65480 -48.56363 -41.76628 -40.35823 -37.19293 -35.26147 -34.34842
-32.20326 -31.87808 -28.78026 -27.47661 -26.59781 -25.66715 -24.56745 -23.92218
-22.70740 -20.91045 -19.89400 -19.46596 -18.86226 -18.66126 -18.33249 -17.96642
-16.85685 -16.64583 -16.23347 -16.09899 -15.62273 -15.52444 -15.51857 -15.13993
-15.02875 -14.86239 -14.76703 -14.69433 -14.60021 -14.27904 -14.01654 -13.76183
-13.56581 -13.39541 -13.07244 -12.96162 -12.88905 -12.77023 -12.60288 -12.39459
-12.21706 -12.09140 -11.69598 -11.63077 -11.13469 -10.93186 -10.87460 -10.76647
-9.67128 -8.86396 -7.87046 -5.19314 1.21936 1.47641 1.50062 1.56157
1.58545 1.94773 2.49980 2.65869 2.91593 2.99173 3.34664 3.46054
3.50087 3.60867 3.78370 3.82470 3.96669 4.09716 4.16396 4.35383
4.38431 4.58537 4.60500 4.66324 4.68618 4.77057 4.85687 4.86374
4.92657 5.07579 5.11533 5.17170 5.24245 5.30513 5.37525 5.46621
5.59991 5.77045 5.97487 6.25745 6.92539 6.94665 7.64740 8.66657
9.30212
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.025982 B = 0.003073 C = 0.002945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1077.402797 B = 9109.939414 C = 9503.911636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.159 4.159
3 H 0.166 0.834
4 C 0.520 3.480
5 O -0.564 6.564
6 N -0.595 5.595
7 C 0.119 3.881
8 C -0.105 4.105
9 C -0.087 4.087
10 C 0.129 3.871
11 N -0.636 5.636
12 C -0.225 4.225
13 H 0.084 0.916
14 C -0.065 4.065
15 N -0.953 5.953
16 Si 0.974 3.026
17 H -0.281 1.281
18 H -0.298 1.298
19 H -0.273 1.273
20 C 0.160 3.840
21 C -0.090 4.090
22 C 0.108 3.892
23 C 0.467 3.533
24 F -0.189 7.189
25 F -0.173 7.173
26 F -0.180 7.180
27 H 0.094 0.906
28 H 0.065 0.935
29 H 0.105 0.895
30 H 0.086 0.914
31 H 0.085 0.915
32 H 0.062 0.938
33 H 0.079 0.921
34 H 0.038 0.962
35 H 0.054 0.946
36 H 0.246 0.754
37 H 0.035 0.965
38 H 0.007 0.993
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.116 0.884
42 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.102 -6.519 18.127 19.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.181 4.181
3 H 0.184 0.816
4 C 0.307 3.693
5 O -0.443 6.443
6 N -0.326 5.326
7 C -0.003 4.003
8 C -0.144 4.144
9 C -0.088 4.088
10 C 0.004 3.996
11 N -0.362 5.362
12 C -0.353 4.353
13 H 0.102 0.898
14 C -0.258 4.258
15 N -0.602 5.602
16 Si 0.803 3.197
17 H -0.208 1.208
18 H -0.224 1.224
19 H -0.199 1.199
20 C 0.034 3.966
21 C -0.129 4.129
22 C -0.013 4.013
23 C 0.412 3.588
24 F -0.171 7.171
25 F -0.155 7.155
26 F -0.162 7.162
27 H 0.112 0.888
28 H 0.084 0.916
29 H 0.124 0.876
30 H 0.105 0.895
31 H 0.103 0.897
32 H 0.081 0.919
33 H 0.098 0.902
34 H 0.056 0.944
35 H 0.073 0.927
36 H 0.055 0.945
37 H 0.054 0.946
38 H 0.025 0.975
39 H 0.085 0.915
40 H 0.084 0.916
41 H 0.134 0.866
42 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 3.083 -6.866 17.961 19.474
hybrid contribution -0.113 0.684 -1.039 1.250
sum 2.970 -6.181 16.921 18.258
Atomic orbital electron populations
1.21867 0.87417 1.04722 1.06398 1.22778 1.02865 1.03556 0.88933
0.81636 1.20157 0.77320 0.87041 0.84781 1.90766 1.54683 1.15045
1.83800 1.48091 1.60371 1.09788 1.14360 1.21638 0.96504 0.98641
0.83494 1.21649 1.00477 0.94185 0.98104 1.21875 0.97506 0.94330
0.95128 1.22550 0.92816 0.91492 0.92751 1.45901 1.18902 1.09240
1.62164 1.19277 1.01909 0.88059 1.26085 0.89788 1.25554 0.96678
1.01904 1.01672 1.70012 1.07850 1.36927 1.45401 0.85214 0.76316
0.79934 0.78253 1.20758 1.22398 1.19870 1.22022 0.95236 0.86800
0.92500 1.21348 0.98354 1.00840 0.92309 1.22061 1.01196 0.78666
0.99419 1.20113 0.75216 0.77819 0.85605 1.93187 1.30588 1.96452
1.96831 1.93199 1.88347 1.80555 1.53382 1.93211 1.88276 1.37988
1.96717 0.88758 0.91580 0.87603 0.89545 0.89667 0.91887 0.90234
0.94423 0.92744 0.94479 0.94644 0.97521 0.91464 0.91558 0.86626
0.89448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 8.85 71.98 0.64 -1.28 16
2 C -0.16 -2.59 1.92 -11.54 -0.02 -2.61 16
3 H 0.17 1.61 6.14 -2.39 -0.01 1.60 16
4 C 0.52 11.99 6.42 87.66 0.56 12.55 16
5 O -0.56 -17.36 14.76 -3.03 -0.04 -17.41 16
6 N -0.59 -12.73 2.94 -818.43 -2.41 -15.14 16
7 C 0.12 2.72 6.35 86.42 0.55 3.26 16
8 C -0.11 -2.75 5.30 30.57 0.16 -2.59 16
9 C -0.09 -2.78 0.84 -52.51 -0.04 -2.82 16
10 C 0.13 4.63 7.63 83.32 0.64 5.26 16
11 N -0.64 -30.73 3.55 -738.25 -2.62 -33.35 16
12 C -0.23 -12.11 10.74 84.03 0.90 -11.20 16
13 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16
14 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16
15 N -0.95 -56.33 11.52 21.65 0.25 -56.08 16
16 Si 0.97 44.43 29.55 68.60 2.03 46.46 16
17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
18 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16
19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
20 C 0.16 7.21 6.54 83.31 0.55 7.76 16
21 C -0.09 -2.45 5.27 30.56 0.16 -2.29 16
22 C 0.11 2.01 6.08 86.42 0.53 2.53 16
23 C 0.47 9.39 2.57 71.98 0.18 9.58 16
24 F -0.19 -4.30 17.02 44.97 0.77 -3.54 16
25 F -0.17 -3.06 16.89 44.97 0.76 -2.30 16
26 F -0.18 -4.52 15.30 44.97 0.69 -3.84 16
27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
28 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16
29 H 0.11 0.92 7.94 -2.39 -0.02 0.90 16
30 H 0.09 2.11 6.97 -2.39 -0.02 2.09 16
31 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16
32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
33 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16
34 H 0.04 1.33 8.06 -2.39 -0.02 1.31 16
35 H 0.05 1.77 7.53 -2.38 -0.02 1.75 16
36 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16
37 H 0.04 1.82 7.11 -2.39 -0.02 1.80 16
38 H 0.01 0.33 8.09 -2.39 -0.02 0.31 16
39 H 0.07 2.21 7.95 -2.38 -0.02 2.19 16
40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
41 H 0.12 1.38 5.47 -2.38 -0.01 1.36 16
42 H 0.09 1.53 7.60 -2.39 -0.02 1.51 16
Total: -1.00 -69.95 344.21 5.72 -64.23
By element:
Atomic # 1 Polarization: 4.91 SS G_CDS: 1.04 Total: 5.94 kcal
Atomic # 6 Polarization: 9.75 SS G_CDS: 5.27 Total: 15.02 kcal
Atomic # 7 Polarization: -99.79 SS G_CDS: -4.78 Total: -104.57 kcal
Atomic # 8 Polarization: -17.36 SS G_CDS: -0.04 Total: -17.41 kcal
Atomic # 9 Polarization: -11.88 SS G_CDS: 2.21 Total: -9.67 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal
Total: -69.95 5.72 -64.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035769034.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -85.049 kcal
(2) G-P(sol) polarization free energy of solvation -69.954 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.281 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds