Wall clock time and date at job start Tue Mar 31 2020 12:10:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08993 * 109.47496 * 2 1
4 4 C 1.50704 * 109.47072 * 240.00362 * 2 1 3
5 5 O 1.21285 * 120.00019 * 327.16754 * 4 2 1
6 6 N 1.34772 * 120.00113 * 147.16550 * 4 2 1
7 7 C 1.47847 * 122.22670 * 354.59533 * 6 4 2
8 8 C 1.52719 * 111.05896 * 127.53673 * 7 6 4
9 9 C 1.53868 * 111.52174 * 48.54058 * 8 7 6
10 10 C 1.51355 * 107.26773 * 302.85172 * 9 8 7
11 11 H 1.09002 * 108.78987 * 308.77788 * 10 9 8
12 12 C 1.45731 * 122.22674 * 174.62386 * 6 4 2
13 13 H 1.09001 * 111.07425 * 118.57317 * 12 6 4
14 14 C 1.53431 * 116.36572 * 350.06997 * 12 6 4
15 15 C 1.55479 * 101.67044 * 207.28209 * 14 12 6
16 16 N 1.45025 * 119.02100 * 183.60269 * 10 9 8
17 17 C 1.36935 * 126.56410 * 29.31503 * 16 10 9
18 18 H 1.08004 * 119.99542 * 350.97203 * 17 16 10
19 19 C 1.38809 * 119.99925 * 170.97139 * 17 16 10
20 20 N 1.31615 * 120.00022 * 320.44683 * 19 17 16
21 21 Si 1.86806 * 120.00023 * 140.45234 * 19 17 16
22 22 H 1.48506 * 109.46683 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47155 * 239.99880 * 21 19 17
24 24 H 1.48499 * 109.47143 * 119.99429 * 21 19 17
25 25 C 1.53004 * 109.47189 * 120.00524 * 2 1 3
26 26 F 1.39897 * 109.47028 * 179.97438 * 25 2 1
27 27 F 1.39898 * 109.46802 * 299.99867 * 25 2 1
28 28 F 1.39897 * 109.46839 * 59.99914 * 25 2 1
29 29 H 1.09000 * 109.47180 * 184.90854 * 1 2 3
30 30 H 1.09002 * 109.46731 * 304.90665 * 1 2 3
31 31 H 1.09000 * 109.47018 * 64.90201 * 1 2 3
32 32 H 1.09000 * 109.16540 * 247.94385 * 7 6 4
33 33 H 1.08999 * 109.16168 * 7.13237 * 7 6 4
34 34 H 1.09008 * 109.06929 * 169.06380 * 8 7 6
35 35 H 1.09001 * 109.07251 * 288.00967 * 8 7 6
36 36 H 1.08994 * 109.88777 * 62.52761 * 9 8 7
37 37 H 1.09001 * 109.88386 * 183.61449 * 9 8 7
38 38 H 1.08996 * 110.98845 * 89.18548 * 14 12 6
39 39 H 1.09006 * 110.98883 * 325.37305 * 14 12 6
40 40 H 1.08995 * 109.95616 * 263.21938 * 15 14 12
41 41 H 1.08999 * 109.95770 * 141.97881 * 15 14 12
42 42 H 0.96997 * 120.00083 * 353.71996 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 1.4024 -1.6365 -1.6958
6 7 3.1815 -0.3165 -1.8141
7 6 3.9274 0.8768 -1.3606
8 6 5.3900 0.5367 -1.0822
9 6 6.0154 -0.2580 -2.2418
10 6 5.1746 -1.5009 -2.4396
11 1 5.0573 -2.0020 -1.4788
12 6 3.7714 -1.0381 -2.9344
13 1 3.8327 -0.4052 -3.8197
14 6 3.1508 -2.4006 -3.2698
15 6 4.3537 -3.1433 -3.9170
16 7 5.5870 -2.4795 -3.4273
17 6 6.8696 -2.7443 -3.8271
18 1 7.6781 -2.1037 -3.5070
19 6 7.1306 -3.8360 -4.6437
20 7 6.4964 -4.9722 -4.4461
21 14 8.3822 -3.6925 -6.0231
22 1 8.9509 -2.3208 -6.0347
23 1 7.7188 -3.9639 -7.3236
24 1 9.4714 -4.6787 -5.8077
25 6 2.0400 -0.7214 1.2492
26 9 3.4390 -0.7219 1.2489
27 9 1.5737 -0.0619 2.3915
28 9 1.5737 -2.0403 1.2490
29 1 -0.3633 -1.0239 0.0879
30 1 -0.3633 0.5881 0.8428
31 1 -0.3633 0.4359 -0.9306
32 1 3.8794 1.6439 -2.1336
33 1 3.4693 1.2599 -0.4488
34 1 5.9500 1.4613 -0.9412
35 1 5.4501 -0.0571 -0.1701
36 1 6.0112 0.3454 -3.1495
37 1 7.0370 -0.5413 -1.9886
38 1 2.3311 -2.2920 -3.9800
39 1 2.8174 -2.9109 -2.3661
40 1 4.2967 -3.0682 -5.0029
41 1 4.3500 -4.1908 -3.6155
42 1 5.9155 -5.0758 -3.6763
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049642180.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:57
Heat of formation + Delta-G solvation = -151.996472 kcal
Electronic energy + Delta-G solvation = -29730.454975 eV
Core-core repulsion = 25296.516969 eV
Total energy + Delta-G solvation = -4433.938006 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-50.31470 -47.82661 -47.72977 -40.65181 -38.20815 -35.73227 -34.11057 -32.80882
-32.24606 -28.97612 -28.44573 -26.75461 -25.20288 -24.26444 -23.14976 -21.65342
-20.93787 -19.85382 -19.41812 -18.76660 -18.52035 -17.54886 -17.29175 -16.55767
-15.88737 -15.21711 -14.78360 -14.71079 -14.52546 -14.30925 -14.18628 -14.11443
-13.96115 -13.87494 -13.85918 -13.54763 -13.39311 -13.22363 -12.79197 -12.55777
-12.33922 -12.22089 -12.13954 -11.86856 -11.63206 -11.05030 -10.87988 -10.66161
-10.60892 -10.31954 -10.25704 -10.13131 -9.99415 -9.67674 -9.38306 -8.54064
-8.20218 -6.96863 -6.15907 -3.02915 2.00738 2.74271 2.80561 3.53272
3.55104 3.57713 3.71659 3.71795 3.78144 4.27288 4.45981 4.52498
4.60782 4.78225 4.97386 5.08963 5.16203 5.24377 5.25116 5.34654
5.43548 5.48830 5.61917 5.67031 5.76895 5.85745 5.90453 6.01897
6.16492 6.25710 6.31178 6.51352 6.60933 6.68134 6.95456 7.05776
7.12195 7.39497 7.80806 8.03726 8.48199 9.00410 9.83389 10.42592
11.16735
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.023028 B = 0.004113 C = 0.003940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1215.632973 B = 6805.443306 C = 7105.051176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.165 4.165
3 H 0.132 0.868
4 C 0.519 3.481
5 O -0.508 6.508
6 N -0.590 5.590
7 C 0.108 3.892
8 C -0.131 4.131
9 C -0.113 4.113
10 C 0.161 3.839
11 H 0.017 0.983
12 C 0.116 3.884
13 H 0.086 0.914
14 C -0.117 4.117
15 C 0.136 3.864
16 N -0.588 5.588
17 C -0.350 4.350
18 H 0.071 0.929
19 C -0.016 4.016
20 N -0.895 5.895
21 Si 1.049 2.951
22 H -0.292 1.292
23 H -0.290 1.290
24 H -0.297 1.297
25 C 0.464 3.536
26 F -0.175 7.175
27 F -0.179 7.179
28 F -0.170 7.170
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.073 0.927
33 H 0.075 0.925
34 H 0.075 0.925
35 H 0.067 0.933
36 H 0.065 0.935
37 H 0.069 0.931
38 H 0.067 0.933
39 H 0.081 0.919
40 H 0.035 0.965
41 H 0.041 0.959
42 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.555 15.552 10.579 21.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.188 4.188
3 H 0.149 0.851
4 C 0.304 3.696
5 O -0.383 6.383
6 N -0.323 5.323
7 C -0.015 4.015
8 C -0.170 4.170
9 C -0.151 4.151
10 C 0.052 3.948
11 H 0.035 0.965
12 C 0.012 3.988
13 H 0.104 0.896
14 C -0.155 4.155
15 C 0.011 3.989
16 N -0.314 5.314
17 C -0.476 4.476
18 H 0.088 0.912
19 C -0.220 4.220
20 N -0.534 5.534
21 Si 0.879 3.121
22 H -0.218 1.218
23 H -0.217 1.217
24 H -0.224 1.224
25 C 0.409 3.591
26 F -0.156 7.156
27 F -0.161 7.161
28 F -0.151 7.151
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.100 0.900
32 H 0.091 0.909
33 H 0.094 0.906
34 H 0.094 0.906
35 H 0.086 0.914
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.086 0.914
39 H 0.100 0.900
40 H 0.053 0.947
41 H 0.059 0.941
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -10.098 14.188 9.039 19.621
hybrid contribution -0.389 0.832 1.607 1.851
sum -10.487 15.020 10.646 21.187
Atomic orbital electron populations
1.21705 0.88914 1.04999 1.04035 1.22771 1.01924 1.02608 0.91513
0.85060 1.19623 0.81091 0.84289 0.84586 1.90757 1.55749 1.28148
1.63604 1.48006 1.22106 1.28688 1.33471 1.21837 0.93051 0.86788
0.99806 1.21919 0.94021 1.00998 1.00040 1.21422 1.00066 0.96412
0.97217 1.20798 0.90890 0.90353 0.92771 0.96527 1.22526 0.95030
0.93570 0.87643 0.89602 1.22707 0.97223 0.93939 1.01672 1.21861
0.84107 0.96153 0.96812 1.44142 1.02174 1.40391 1.44670 1.19571
0.83298 1.12427 1.32334 0.91155 1.25526 1.02996 0.90895 1.02587
1.70734 1.29395 1.22010 1.31278 0.83818 0.75795 0.74848 0.77655
1.21808 1.21715 1.22430 1.20034 0.75851 0.78211 0.84962 1.93242
1.29315 1.96375 1.96697 1.93188 1.88510 1.80763 1.53609 1.93247
1.88274 1.36948 1.96664 0.89988 0.90568 0.89965 0.90873 0.90634
0.90620 0.91389 0.91665 0.91235 0.91412 0.90017 0.94668 0.94104
0.91909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.21 8.50 37.16 0.32 -0.90 16
2 C -0.17 -1.72 2.15 -91.77 -0.20 -1.91 16
3 H 0.13 0.94 5.93 -51.93 -0.31 0.63 16
4 C 0.52 7.51 6.13 -10.99 -0.07 7.44 16
5 O -0.51 -8.99 13.32 5.55 0.07 -8.92 16
6 N -0.59 -8.55 2.91 -163.79 -0.48 -9.03 16
7 C 0.11 1.17 5.93 -3.45 -0.02 1.14 16
8 C -0.13 -1.62 5.92 -26.42 -0.16 -1.77 16
9 C -0.11 -1.90 5.41 -27.11 -0.15 -2.05 16
10 C 0.16 3.31 2.61 -68.05 -0.18 3.14 16
11 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16
12 C 0.12 2.08 3.33 -66.62 -0.22 1.86 16
13 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16
14 C -0.12 -2.36 4.93 -25.19 -0.12 -2.48 16
15 C 0.14 3.28 5.98 -1.69 -0.01 3.27 16
16 N -0.59 -14.83 3.30 -162.92 -0.54 -15.37 16
17 C -0.35 -9.74 9.60 -15.06 -0.14 -9.88 16
18 H 0.07 1.94 7.50 -52.48 -0.39 1.55 16
19 C -0.02 -0.47 5.03 -17.43 -0.09 -0.56 16
20 N -0.90 -27.20 12.93 55.49 0.72 -26.49 16
21 Si 1.05 25.33 30.05 -169.99 -5.11 20.22 16
22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
24 H -0.30 -7.14 7.11 56.52 0.40 -6.73 16
25 C 0.46 5.53 2.68 37.16 0.10 5.63 16
26 F -0.17 -2.30 15.95 2.25 0.04 -2.27 16
27 F -0.18 -1.89 16.89 2.25 0.04 -1.85 16
28 F -0.17 -2.44 16.42 2.25 0.04 -2.40 16
29 H 0.08 0.85 7.54 -51.93 -0.39 0.46 16
30 H 0.08 0.49 7.94 -51.93 -0.41 0.08 16
31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.08 0.61 5.28 -51.93 -0.27 0.34 16
34 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16
35 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16
36 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16
37 H 0.07 1.27 7.73 -51.93 -0.40 0.87 16
38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
39 H 0.08 1.75 6.39 -51.93 -0.33 1.42 16
40 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16
41 H 0.04 1.08 6.29 -51.93 -0.33 0.76 16
42 H 0.27 8.33 6.56 -40.82 -0.27 8.06 16
LS Contribution 335.09 15.07 5.05 5.05
Total: -1.00 -32.43 335.09 -6.78 -39.21
By element:
Atomic # 1 Polarization: 4.58 SS G_CDS: -5.68 Total: -1.10 kcal
Atomic # 6 Polarization: 3.88 SS G_CDS: -0.94 Total: 2.94 kcal
Atomic # 7 Polarization: -50.59 SS G_CDS: -0.30 Total: -50.88 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal
Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal
Atomic # 14 Polarization: 25.33 SS G_CDS: -5.11 Total: 20.22 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -32.43 -6.78 -39.21 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049642180.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -112.787 kcal
(2) G-P(sol) polarization free energy of solvation -32.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.996 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds