Wall clock time and date at job start Tue Mar 31 2020 12:10:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08993 * 109.47496 * 2 1
4 4 C 1.50704 * 109.47072 * 240.00362 * 2 1 3
5 5 O 1.21285 * 120.00019 * 327.16754 * 4 2 1
6 6 N 1.34772 * 120.00113 * 147.16550 * 4 2 1
7 7 C 1.47847 * 122.22670 * 354.59533 * 6 4 2
8 8 C 1.52719 * 111.05896 * 127.53673 * 7 6 4
9 9 C 1.53868 * 111.52174 * 48.54058 * 8 7 6
10 10 C 1.51355 * 107.26773 * 302.85172 * 9 8 7
11 11 H 1.09002 * 108.78987 * 308.77788 * 10 9 8
12 12 C 1.45731 * 122.22674 * 174.62386 * 6 4 2
13 13 H 1.09001 * 111.07425 * 118.57317 * 12 6 4
14 14 C 1.53431 * 116.36572 * 350.06997 * 12 6 4
15 15 C 1.55479 * 101.67044 * 207.28209 * 14 12 6
16 16 N 1.45025 * 119.02100 * 183.60269 * 10 9 8
17 17 C 1.36935 * 126.56410 * 29.31503 * 16 10 9
18 18 H 1.08004 * 119.99542 * 350.97203 * 17 16 10
19 19 C 1.38809 * 119.99925 * 170.97139 * 17 16 10
20 20 N 1.31615 * 120.00022 * 320.44683 * 19 17 16
21 21 Si 1.86806 * 120.00023 * 140.45234 * 19 17 16
22 22 H 1.48506 * 109.46683 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47155 * 239.99880 * 21 19 17
24 24 H 1.48499 * 109.47143 * 119.99429 * 21 19 17
25 25 C 1.53004 * 109.47189 * 120.00524 * 2 1 3
26 26 F 1.39897 * 109.47028 * 179.97438 * 25 2 1
27 27 F 1.39898 * 109.46802 * 299.99867 * 25 2 1
28 28 F 1.39897 * 109.46839 * 59.99914 * 25 2 1
29 29 H 1.09000 * 109.47180 * 184.90854 * 1 2 3
30 30 H 1.09002 * 109.46731 * 304.90665 * 1 2 3
31 31 H 1.09000 * 109.47018 * 64.90201 * 1 2 3
32 32 H 1.09000 * 109.16540 * 247.94385 * 7 6 4
33 33 H 1.08999 * 109.16168 * 7.13237 * 7 6 4
34 34 H 1.09008 * 109.06929 * 169.06380 * 8 7 6
35 35 H 1.09001 * 109.07251 * 288.00967 * 8 7 6
36 36 H 1.08994 * 109.88777 * 62.52761 * 9 8 7
37 37 H 1.09001 * 109.88386 * 183.61449 * 9 8 7
38 38 H 1.08996 * 110.98845 * 89.18548 * 14 12 6
39 39 H 1.09006 * 110.98883 * 325.37305 * 14 12 6
40 40 H 1.08995 * 109.95616 * 263.21938 * 15 14 12
41 41 H 1.08999 * 109.95770 * 141.97881 * 15 14 12
42 42 H 0.96997 * 120.00083 * 353.71996 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 1.4024 -1.6365 -1.6958
6 7 3.1815 -0.3165 -1.8141
7 6 3.9274 0.8768 -1.3606
8 6 5.3900 0.5367 -1.0822
9 6 6.0154 -0.2580 -2.2418
10 6 5.1746 -1.5009 -2.4396
11 1 5.0573 -2.0020 -1.4788
12 6 3.7714 -1.0381 -2.9344
13 1 3.8327 -0.4052 -3.8197
14 6 3.1508 -2.4006 -3.2698
15 6 4.3537 -3.1433 -3.9170
16 7 5.5870 -2.4795 -3.4273
17 6 6.8696 -2.7443 -3.8271
18 1 7.6781 -2.1037 -3.5070
19 6 7.1306 -3.8360 -4.6437
20 7 6.4964 -4.9722 -4.4461
21 14 8.3822 -3.6925 -6.0231
22 1 8.9509 -2.3208 -6.0347
23 1 7.7188 -3.9639 -7.3236
24 1 9.4714 -4.6787 -5.8077
25 6 2.0400 -0.7214 1.2492
26 9 3.4390 -0.7219 1.2489
27 9 1.5737 -0.0619 2.3915
28 9 1.5737 -2.0403 1.2490
29 1 -0.3633 -1.0239 0.0879
30 1 -0.3633 0.5881 0.8428
31 1 -0.3633 0.4359 -0.9306
32 1 3.8794 1.6439 -2.1336
33 1 3.4693 1.2599 -0.4488
34 1 5.9500 1.4613 -0.9412
35 1 5.4501 -0.0571 -0.1701
36 1 6.0112 0.3454 -3.1495
37 1 7.0370 -0.5413 -1.9886
38 1 2.3311 -2.2920 -3.9800
39 1 2.8174 -2.9109 -2.3661
40 1 4.2967 -3.0682 -5.0029
41 1 4.3500 -4.1908 -3.6155
42 1 5.9155 -5.0758 -3.6763
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049642180.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:56
Heat of formation + Delta-G solvation = -172.395336 kcal
Electronic energy + Delta-G solvation = -29731.339536 eV
Core-core repulsion = 25296.516969 eV
Total energy + Delta-G solvation = -4434.822567 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.145 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-51.26796 -48.75916 -48.72892 -41.92276 -39.63598 -37.18089 -35.20295 -34.28231
-33.90464 -30.78493 -29.89138 -27.60023 -26.50794 -26.13569 -24.32786 -22.97100
-22.40565 -21.52004 -20.59681 -19.79366 -19.50043 -19.21128 -18.43599 -17.72231
-17.19605 -16.64850 -16.33014 -15.86557 -15.70419 -15.63602 -15.42062 -15.30717
-15.18563 -15.12392 -14.89012 -14.84895 -14.55706 -14.44282 -14.14995 -14.03698
-13.54887 -13.44437 -13.30009 -12.93103 -12.67135 -12.65655 -12.50363 -12.20893
-12.10050 -11.91606 -11.88508 -11.80994 -11.69494 -11.50359 -10.72592 -10.44101
-9.68210 -9.08089 -8.41880 -5.24464 0.97160 1.57693 1.63684 1.66507
1.81616 1.82613 2.62145 2.63816 2.80614 2.85530 3.06242 3.20859
3.41955 3.66559 3.72206 3.82666 3.86468 3.92980 4.00333 4.12040
4.21753 4.35460 4.38260 4.57929 4.62963 4.68031 4.69301 4.76388
4.88923 4.92895 4.98982 5.07749 5.13263 5.20610 5.23419 5.37919
5.47448 5.73037 6.23780 6.26958 6.81620 6.90886 7.69460 8.32953
8.90422
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.023028 B = 0.004113 C = 0.003940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1215.632973 B = 6805.443306 C = 7105.051176
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.152 4.152
3 H 0.175 0.825
4 C 0.512 3.488
5 O -0.548 6.548
6 N -0.592 5.592
7 C 0.100 3.900
8 C -0.123 4.123
9 C -0.108 4.108
10 C 0.152 3.848
11 H -0.014 1.014
12 C 0.135 3.865
13 H 0.098 0.902
14 C -0.101 4.101
15 C 0.139 3.861
16 N -0.607 5.607
17 C -0.350 4.350
18 H 0.071 0.929
19 C -0.075 4.075
20 N -0.928 5.928
21 Si 1.107 2.893
22 H -0.267 1.267
23 H -0.290 1.290
24 H -0.295 1.295
25 C 0.460 3.540
26 F -0.184 7.184
27 F -0.167 7.167
28 F -0.191 7.191
29 H 0.058 0.942
30 H 0.105 0.895
31 H 0.092 0.908
32 H 0.104 0.896
33 H 0.113 0.887
34 H 0.115 0.885
35 H 0.054 0.946
36 H 0.074 0.926
37 H 0.047 0.953
38 H 0.079 0.921
39 H 0.064 0.936
40 H 0.018 0.982
41 H 0.005 0.995
42 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.882 19.705 11.147 25.119
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.174 4.174
3 H 0.193 0.807
4 C 0.299 3.701
5 O -0.425 6.425
6 N -0.324 5.324
7 C -0.020 4.020
8 C -0.161 4.161
9 C -0.147 4.147
10 C 0.044 3.956
11 H 0.003 0.997
12 C 0.030 3.970
13 H 0.116 0.884
14 C -0.139 4.139
15 C 0.013 3.987
16 N -0.333 5.333
17 C -0.477 4.477
18 H 0.089 0.911
19 C -0.272 4.272
20 N -0.570 5.570
21 Si 0.932 3.068
22 H -0.192 1.192
23 H -0.217 1.217
24 H -0.222 1.222
25 C 0.406 3.594
26 F -0.165 7.165
27 F -0.149 7.149
28 F -0.172 7.172
29 H 0.077 0.923
30 H 0.124 0.876
31 H 0.111 0.889
32 H 0.123 0.877
33 H 0.131 0.869
34 H 0.134 0.866
35 H 0.073 0.927
36 H 0.092 0.908
37 H 0.066 0.934
38 H 0.098 0.902
39 H 0.083 0.917
40 H 0.037 0.963
41 H 0.022 0.978
42 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -10.426 18.406 9.653 23.252
hybrid contribution -0.298 -0.484 1.542 1.644
sum -10.724 17.922 11.195 23.697
Atomic orbital electron populations
1.21766 0.87570 1.04292 1.05888 1.22829 1.02893 1.03663 0.88029
0.80738 1.20336 0.80593 0.83824 0.85352 1.90743 1.57014 1.29905
1.64883 1.48109 1.22454 1.29374 1.32475 1.22225 0.91543 0.85632
1.02612 1.21901 0.95502 1.01670 0.97047 1.21406 0.98514 0.95049
0.99682 1.21019 0.93752 0.90721 0.90127 0.99668 1.22110 0.92789
0.92792 0.89308 0.88389 1.22476 0.95639 0.95041 1.00731 1.21748
0.85911 0.94970 0.96026 1.44427 1.01706 1.41481 1.45638 1.19849
0.84608 1.11548 1.31694 0.91145 1.26963 1.04969 0.90499 1.04779
1.70880 1.31343 1.23387 1.31350 0.83030 0.73541 0.75990 0.74254
1.19181 1.21712 1.22191 1.20309 0.75449 0.77607 0.86052 1.93229
1.30125 1.96362 1.96805 1.93211 1.88289 1.80287 1.53065 1.93212
1.88480 1.38737 1.96817 0.92279 0.87625 0.88926 0.87744 0.86917
0.86640 0.92709 0.90775 0.93441 0.90193 0.91714 0.96336 0.97754
0.94014
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.98 8.50 71.98 0.61 -1.37 16
2 C -0.15 -2.63 2.15 -11.54 -0.02 -2.65 16
3 H 0.18 1.44 5.93 -2.39 -0.01 1.43 16
4 C 0.51 13.82 6.13 87.66 0.54 14.36 16
5 O -0.55 -19.29 13.32 -3.05 -0.04 -19.33 16
6 N -0.59 -15.67 2.91 -790.51 -2.30 -17.98 16
7 C 0.10 1.69 5.93 86.03 0.51 2.20 16
8 C -0.12 -2.59 5.92 30.79 0.18 -2.41 16
9 C -0.11 -3.49 5.41 30.35 0.16 -3.32 16
10 C 0.15 6.33 2.61 45.70 0.12 6.44 16
11 H -0.01 -0.67 8.05 -2.39 -0.02 -0.69 16
12 C 0.14 4.74 3.33 46.25 0.15 4.89 16
13 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16
14 C -0.10 -4.18 4.93 31.59 0.16 -4.02 16
15 C 0.14 7.12 5.98 86.87 0.52 7.64 16
16 N -0.61 -31.77 3.30 -669.37 -2.21 -33.97 16
17 C -0.35 -19.97 9.60 84.03 0.81 -19.16 16
18 H 0.07 3.95 7.50 -2.91 -0.02 3.93 16
19 C -0.07 -4.39 5.03 84.86 0.43 -3.97 16
20 N -0.93 -59.17 12.93 21.65 0.28 -58.89 16
21 Si 1.11 51.94 30.05 68.60 2.06 54.00 16
22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16
23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
25 C 0.46 9.96 2.68 71.98 0.19 10.15 16
26 F -0.18 -4.47 15.95 44.97 0.72 -3.76 16
27 F -0.17 -3.00 16.89 44.97 0.76 -2.24 16
28 F -0.19 -5.44 16.42 44.97 0.74 -4.70 16
29 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16
30 H 0.11 0.91 7.94 -2.39 -0.02 0.89 16
31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.11 1.11 5.28 -2.39 -0.01 1.10 16
34 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16
35 H 0.05 1.33 7.64 -2.39 -0.02 1.31 16
36 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16
37 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16
38 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16
39 H 0.06 2.92 6.39 -2.38 -0.02 2.90 16
40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.00 0.26 6.29 -2.39 -0.02 0.25 16
42 H 0.25 16.54 6.56 -92.71 -0.61 15.94 16
Total: -1.00 -76.73 335.09 5.57 -71.16
By element:
Atomic # 1 Polarization: 5.75 SS G_CDS: 1.21 Total: 6.95 kcal
Atomic # 6 Polarization: 4.41 SS G_CDS: 4.36 Total: 8.77 kcal
Atomic # 7 Polarization: -106.61 SS G_CDS: -4.23 Total: -110.84 kcal
Atomic # 8 Polarization: -19.29 SS G_CDS: -0.04 Total: -19.33 kcal
Atomic # 9 Polarization: -12.92 SS G_CDS: 2.22 Total: -10.70 kcal
Atomic # 14 Polarization: 51.94 SS G_CDS: 2.06 Total: 54.00 kcal
Total: -76.73 5.57 -71.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049642180.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.236 kcal
(2) G-P(sol) polarization free energy of solvation -76.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.966 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.159 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds