Wall clock time and date at job start Tue Mar 31 2020 12:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47690 * 2 1 4 4 C 1.50703 * 109.46758 * 119.99878 * 2 1 3 5 5 O 1.21287 * 119.99926 * 85.25254 * 4 2 1 6 6 N 1.34771 * 120.00092 * 265.52245 * 4 2 1 7 7 C 1.47764 * 125.82080 * 181.64665 * 6 4 2 8 8 C 1.56241 * 103.98429 * 154.00954 * 7 6 4 9 9 H 1.08997 * 113.17153 * 160.95958 * 8 7 6 10 10 C 1.52895 * 107.47437 * 286.27742 * 8 7 6 11 11 C 1.51607 * 111.54855 * 168.71887 * 10 8 7 12 12 N 1.44322 * 113.11512 * 320.92001 * 11 10 8 13 13 C 1.36941 * 116.35557 * 187.26468 * 12 11 10 14 14 H 1.08002 * 119.99785 * 146.60380 * 13 12 11 15 15 C 1.38808 * 120.00008 * 326.60301 * 13 12 11 16 16 N 1.31620 * 120.00107 * 349.50783 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 169.50581 * 15 13 12 18 18 H 1.48500 * 109.46880 * 60.00528 * 17 15 13 19 19 H 1.48501 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47408 * 300.00423 * 17 15 13 21 21 C 1.42322 * 126.90251 * 6.19554 * 12 11 10 22 22 C 1.49947 * 117.14749 * 4.49446 * 21 12 11 23 23 H 1.09002 * 108.82442 * 139.53064 * 22 21 12 24 24 C 1.47623 * 125.81982 * 1.95751 * 6 4 2 25 25 C 1.52995 * 109.47322 * 239.99457 * 2 1 3 26 26 F 1.39906 * 109.47516 * 300.00848 * 25 2 1 27 27 F 1.39902 * 109.47163 * 60.00162 * 25 2 1 28 28 F 1.39900 * 109.47651 * 180.02562 * 25 2 1 29 29 H 1.09002 * 109.46534 * 303.82454 * 1 2 3 30 30 H 1.09000 * 109.46497 * 63.82064 * 1 2 3 31 31 H 1.09000 * 109.47157 * 183.82362 * 1 2 3 32 32 H 1.08998 * 110.50262 * 272.76109 * 7 6 4 33 33 H 1.08993 * 110.49879 * 35.44702 * 7 6 4 34 34 H 1.08994 * 109.06133 * 289.24995 * 10 8 7 35 35 H 1.08994 * 109.06656 * 48.25778 * 10 8 7 36 36 H 1.09002 * 108.75459 * 81.85659 * 11 10 8 37 37 H 1.08999 * 108.75459 * 200.10729 * 11 10 8 38 38 H 0.97002 * 120.00292 * 179.97438 * 16 15 13 39 39 H 1.09001 * 108.74085 * 241.55337 * 21 12 11 40 40 H 1.08995 * 106.44625 * 125.59865 * 21 12 11 41 41 H 1.09000 * 110.08164 * 299.85611 * 24 6 4 42 42 H 1.09005 * 110.07921 * 61.41507 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1524 -1.9173 1.2274 6 7 2.3428 -0.0052 2.3362 7 6 2.8760 -0.5630 3.5964 8 6 3.6639 0.6268 4.2324 9 1 3.8429 0.5007 5.3002 10 6 4.9534 0.8044 3.4304 11 6 5.6579 2.0984 3.7881 12 7 4.7484 3.1988 3.9998 13 6 5.3168 4.4324 4.1745 14 1 4.8112 5.3159 3.8138 15 6 6.5429 4.5471 4.8150 16 7 7.0615 3.5081 5.4347 17 14 7.4570 6.1761 4.7975 18 1 6.6185 7.2211 5.4380 19 1 8.7314 6.0367 5.5470 20 1 7.7475 6.5657 3.3944 21 6 3.3266 3.1397 4.0249 22 6 2.6961 1.7838 3.9136 23 1 1.8506 1.7317 4.5996 24 6 2.2021 1.4555 2.4971 25 6 2.0401 -0.7213 -1.2491 26 9 1.5736 -2.0403 -1.2492 27 9 1.5738 -0.0619 -2.3915 28 9 3.4391 -0.7219 -1.2489 29 1 -0.3632 0.5721 0.8538 30 1 -0.3632 0.4534 -0.9223 31 1 -0.3633 -1.0254 0.0685 32 1 2.0618 -0.8775 4.2493 33 1 3.5460 -1.3978 3.3909 34 1 5.6198 -0.0328 3.6378 35 1 4.7132 0.8132 2.3673 36 1 6.2369 1.9422 4.6983 37 1 6.3405 2.3608 2.9798 38 1 7.9185 3.5882 5.8821 39 1 2.9359 3.7630 3.2206 40 1 3.0160 3.5821 4.9714 41 1 2.8130 1.9740 1.7582 42 1 1.1568 1.7450 2.3889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088070074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:33 Heat of formation + Delta-G solvation = -161.666568 kcal Electronic energy + Delta-G solvation = -28866.569537 eV Core-core repulsion = 24432.212204 eV Total energy + Delta-G solvation = -4434.357333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.21285 -47.74419 -47.60160 -40.59169 -38.65219 -35.78589 -34.28981 -32.53838 -31.55990 -30.34469 -28.06007 -26.75513 -25.74399 -24.28374 -22.91425 -22.03518 -21.42248 -19.72131 -18.79115 -18.49153 -18.01556 -17.39508 -17.16682 -16.86086 -15.98224 -15.22666 -14.96714 -14.81235 -14.53997 -14.33173 -14.09092 -13.94995 -13.92002 -13.82835 -13.75481 -13.47621 -13.27677 -13.14687 -12.91209 -12.74682 -12.53330 -12.30042 -12.19408 -11.84987 -11.63359 -11.32848 -11.05884 -10.83210 -10.64300 -10.30928 -10.27214 -10.07622 -9.77465 -9.65742 -9.56666 -8.73276 -8.56198 -6.60498 -5.58416 -3.41391 2.14798 2.52475 2.84875 3.34918 3.40526 3.41479 3.51921 3.82061 3.84614 4.33524 4.44056 4.56546 4.63314 4.67975 4.79372 5.02426 5.13559 5.23493 5.29080 5.36104 5.46285 5.52391 5.58689 5.65119 5.76514 5.86014 5.90684 6.07040 6.15419 6.27772 6.53245 6.57623 6.65624 6.75937 6.81490 7.32597 7.36391 7.74710 7.89077 8.01373 8.56827 9.29039 9.97487 10.24910 11.20983 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.003484 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.149714 B = 8035.809863 C = 8418.691253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 H 0.133 0.867 4 C 0.536 3.464 5 O -0.527 6.527 6 N -0.606 5.606 7 C 0.107 3.893 8 C -0.081 4.081 9 H 0.103 0.897 10 C -0.121 4.121 11 C 0.149 3.851 12 N -0.585 5.585 13 C -0.268 4.268 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.897 5.897 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.179 3.821 22 C -0.097 4.097 23 H 0.076 0.924 24 C 0.102 3.898 25 C 0.470 3.530 26 F -0.166 7.166 27 F -0.181 7.181 28 F -0.178 7.178 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.096 0.904 37 H 0.014 0.986 38 H 0.254 0.746 39 H 0.008 0.992 40 H 0.022 0.978 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -6.773 -8.361 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 H 0.151 0.849 4 C 0.322 3.678 5 O -0.403 6.403 6 N -0.339 5.339 7 C -0.015 4.015 8 C -0.100 4.100 9 H 0.121 0.879 10 C -0.159 4.159 11 C 0.024 3.976 12 N -0.310 5.310 13 C -0.398 4.398 14 H 0.080 0.920 15 C -0.189 4.189 16 N -0.541 5.541 17 Si 0.737 3.263 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.210 1.210 21 C 0.052 3.948 22 C -0.116 4.116 23 H 0.094 0.906 24 C -0.020 4.020 25 C 0.415 3.585 26 F -0.148 7.148 27 F -0.162 7.162 28 F -0.159 7.159 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.928 -7.565 -8.368 17.158 hybrid contribution 0.640 0.921 -0.314 1.164 sum -12.289 -6.645 -8.682 16.448 Atomic orbital electron populations 1.21760 0.88907 1.04770 1.04721 1.22589 1.01630 1.02867 0.91261 0.84942 1.19286 0.78367 0.87010 0.83107 1.90794 1.53428 1.13205 1.82872 1.48615 1.63032 1.08969 1.13257 1.22800 0.97413 0.97519 0.83773 1.22301 0.95156 0.92131 1.00443 0.87918 1.21605 0.95567 1.00365 0.98370 1.20508 0.91250 0.83749 1.02067 1.42162 0.99026 1.06116 1.83649 1.19090 1.03491 0.85481 1.31775 0.91967 1.25220 0.99443 0.97227 0.96987 1.69757 1.19243 1.28763 1.36347 0.86306 0.79006 0.83364 0.77665 1.20765 1.21544 1.20997 1.18982 0.85965 0.91421 0.98395 1.21502 0.98589 0.97280 0.94265 0.90588 1.22342 1.00718 0.79496 0.99421 1.19844 0.75798 0.78147 0.84675 1.93235 1.88182 1.36721 1.96614 1.93183 1.88516 1.80886 1.53621 1.93227 1.29547 1.96410 1.96708 0.89775 0.89893 0.90390 0.91342 0.90183 0.92472 0.93695 0.88718 0.96758 0.93544 0.97481 0.96020 0.90570 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.93 37.16 0.33 -0.83 16 2 C -0.16 -1.75 2.37 -91.77 -0.22 -1.96 16 3 H 0.13 1.22 6.96 -51.93 -0.36 0.86 16 4 C 0.54 7.52 6.59 -10.99 -0.07 7.45 16 5 O -0.53 -9.12 15.64 5.55 0.09 -9.03 16 6 N -0.61 -8.13 2.85 -169.38 -0.48 -8.61 16 7 C 0.11 1.45 6.27 -1.61 -0.01 1.44 16 8 C -0.08 -1.25 3.72 -88.32 -0.33 -1.57 16 9 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 10 C -0.12 -2.19 5.02 -27.49 -0.14 -2.33 16 11 C 0.15 3.43 5.16 -5.91 -0.03 3.40 16 12 N -0.59 -13.82 3.16 -180.86 -0.57 -14.39 16 13 C -0.27 -7.08 9.27 -15.06 -0.14 -7.22 16 14 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 15 C 0.01 0.28 5.20 -17.43 -0.09 0.19 16 16 N -0.90 -24.90 10.49 55.49 0.58 -24.32 16 17 Si 0.91 21.08 29.57 -169.99 -5.03 16.06 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.18 3.42 5.58 -7.75 -0.04 3.38 16 22 C -0.10 -1.42 2.71 -91.23 -0.25 -1.67 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 C 0.10 1.28 4.84 -3.13 -0.02 1.26 16 25 C 0.47 5.88 2.57 37.16 0.10 5.97 16 26 F -0.17 -2.32 15.46 2.25 0.03 -2.29 16 27 F -0.18 -2.03 16.73 2.25 0.04 -2.00 16 28 F -0.18 -2.57 17.02 2.25 0.04 -2.53 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 31 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.16 7.96 -51.93 -0.41 0.74 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.81 6.86 -51.93 -0.36 0.46 16 36 H 0.10 2.48 5.52 -51.93 -0.29 2.20 16 37 H 0.01 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.01 0.14 7.77 -51.93 -0.40 -0.26 16 40 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 41 H 0.08 1.02 7.45 -51.93 -0.39 0.63 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -30.24 339.83 -7.03 -37.27 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.94 Total: -2.78 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.91 Total: 7.50 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.47 Total: -47.32 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.24 -7.03 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088070074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.401 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds