Wall clock time and date at job start Tue Mar 31 2020 12:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47690 * 2 1 4 4 C 1.50703 * 109.46758 * 119.99878 * 2 1 3 5 5 O 1.21287 * 119.99926 * 85.25254 * 4 2 1 6 6 N 1.34771 * 120.00092 * 265.52245 * 4 2 1 7 7 C 1.47764 * 125.82080 * 181.64665 * 6 4 2 8 8 C 1.56241 * 103.98429 * 154.00954 * 7 6 4 9 9 H 1.08997 * 113.17153 * 160.95958 * 8 7 6 10 10 C 1.52895 * 107.47437 * 286.27742 * 8 7 6 11 11 C 1.51607 * 111.54855 * 168.71887 * 10 8 7 12 12 N 1.44322 * 113.11512 * 320.92001 * 11 10 8 13 13 C 1.36941 * 116.35557 * 187.26468 * 12 11 10 14 14 H 1.08002 * 119.99785 * 146.60380 * 13 12 11 15 15 C 1.38808 * 120.00008 * 326.60301 * 13 12 11 16 16 N 1.31620 * 120.00107 * 349.50783 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 169.50581 * 15 13 12 18 18 H 1.48500 * 109.46880 * 60.00528 * 17 15 13 19 19 H 1.48501 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47408 * 300.00423 * 17 15 13 21 21 C 1.42322 * 126.90251 * 6.19554 * 12 11 10 22 22 C 1.49947 * 117.14749 * 4.49446 * 21 12 11 23 23 H 1.09002 * 108.82442 * 139.53064 * 22 21 12 24 24 C 1.47623 * 125.81982 * 1.95751 * 6 4 2 25 25 C 1.52995 * 109.47322 * 239.99457 * 2 1 3 26 26 F 1.39906 * 109.47516 * 300.00848 * 25 2 1 27 27 F 1.39902 * 109.47163 * 60.00162 * 25 2 1 28 28 F 1.39900 * 109.47651 * 180.02562 * 25 2 1 29 29 H 1.09002 * 109.46534 * 303.82454 * 1 2 3 30 30 H 1.09000 * 109.46497 * 63.82064 * 1 2 3 31 31 H 1.09000 * 109.47157 * 183.82362 * 1 2 3 32 32 H 1.08998 * 110.50262 * 272.76109 * 7 6 4 33 33 H 1.08993 * 110.49879 * 35.44702 * 7 6 4 34 34 H 1.08994 * 109.06133 * 289.24995 * 10 8 7 35 35 H 1.08994 * 109.06656 * 48.25778 * 10 8 7 36 36 H 1.09002 * 108.75459 * 81.85659 * 11 10 8 37 37 H 1.08999 * 108.75459 * 200.10729 * 11 10 8 38 38 H 0.97002 * 120.00292 * 179.97438 * 16 15 13 39 39 H 1.09001 * 108.74085 * 241.55337 * 21 12 11 40 40 H 1.08995 * 106.44625 * 125.59865 * 21 12 11 41 41 H 1.09000 * 110.08164 * 299.85611 * 24 6 4 42 42 H 1.09005 * 110.07921 * 61.41507 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1524 -1.9173 1.2274 6 7 2.3428 -0.0052 2.3362 7 6 2.8760 -0.5630 3.5964 8 6 3.6639 0.6268 4.2324 9 1 3.8429 0.5007 5.3002 10 6 4.9534 0.8044 3.4304 11 6 5.6579 2.0984 3.7881 12 7 4.7484 3.1988 3.9998 13 6 5.3168 4.4324 4.1745 14 1 4.8112 5.3159 3.8138 15 6 6.5429 4.5471 4.8150 16 7 7.0615 3.5081 5.4347 17 14 7.4570 6.1761 4.7975 18 1 6.6185 7.2211 5.4380 19 1 8.7314 6.0367 5.5470 20 1 7.7475 6.5657 3.3944 21 6 3.3266 3.1397 4.0249 22 6 2.6961 1.7838 3.9136 23 1 1.8506 1.7317 4.5996 24 6 2.2021 1.4555 2.4971 25 6 2.0401 -0.7213 -1.2491 26 9 1.5736 -2.0403 -1.2492 27 9 1.5738 -0.0619 -2.3915 28 9 3.4391 -0.7219 -1.2489 29 1 -0.3632 0.5721 0.8538 30 1 -0.3632 0.4534 -0.9223 31 1 -0.3633 -1.0254 0.0685 32 1 2.0618 -0.8775 4.2493 33 1 3.5460 -1.3978 3.3909 34 1 5.6198 -0.0328 3.6378 35 1 4.7132 0.8132 2.3673 36 1 6.2369 1.9422 4.6983 37 1 6.3405 2.3608 2.9798 38 1 7.9185 3.5882 5.8821 39 1 2.9359 3.7630 3.2206 40 1 3.0160 3.5821 4.9714 41 1 2.8130 1.9740 1.7582 42 1 1.1568 1.7450 2.3889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088070074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:32 Heat of formation + Delta-G solvation = -179.071875 kcal Electronic energy + Delta-G solvation = -28867.324288 eV Core-core repulsion = 24432.212204 eV Total energy + Delta-G solvation = -4435.112084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.19908 -48.72734 -48.62006 -41.74234 -39.92521 -37.36583 -35.20602 -34.10097 -33.03953 -31.96382 -29.38838 -27.54766 -27.19926 -25.77195 -24.20986 -23.46061 -22.74148 -20.73358 -19.78530 -19.51987 -19.42485 -18.90060 -18.36992 -17.94237 -17.23028 -16.87672 -16.25014 -15.96351 -15.64878 -15.59109 -15.49573 -15.31323 -15.09537 -14.84187 -14.77518 -14.72263 -14.58351 -14.25670 -14.10311 -13.89074 -13.72304 -13.36448 -13.29442 -12.99471 -12.97393 -12.79254 -12.56621 -12.41320 -12.21037 -12.06830 -11.77428 -11.44348 -11.28254 -11.20862 -11.02675 -10.57896 -9.76851 -8.57058 -7.58081 -5.46197 1.14198 1.48439 1.50254 1.54784 1.56641 1.86332 2.51641 2.60148 2.85402 2.93561 3.28504 3.36226 3.49977 3.65488 3.77298 3.82634 3.87348 3.90100 4.17704 4.32581 4.49244 4.53535 4.60103 4.62468 4.67596 4.68943 4.79613 4.91557 4.97400 5.07148 5.08858 5.11072 5.20142 5.30390 5.37820 5.47108 5.68601 6.06374 6.29906 6.53907 6.83991 7.28186 8.11336 8.29437 9.16276 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.003484 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.149714 B = 8035.809863 C = 8418.691253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.154 4.154 3 H 0.154 0.846 4 C 0.533 3.467 5 O -0.565 6.565 6 N -0.605 5.605 7 C 0.115 3.885 8 C -0.080 4.080 9 H 0.100 0.900 10 C -0.109 4.109 11 C 0.159 3.841 12 N -0.597 5.597 13 C -0.282 4.282 14 H 0.064 0.936 15 C -0.041 4.041 16 N -0.923 5.923 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.281 1.281 21 C 0.175 3.825 22 C -0.093 4.093 23 H 0.107 0.893 24 C 0.107 3.893 25 C 0.464 3.536 26 F -0.178 7.178 27 F -0.172 7.172 28 F -0.194 7.194 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.063 0.937 37 H -0.022 1.022 38 H 0.248 0.752 39 H 0.020 0.980 40 H 0.009 0.991 41 H 0.068 0.932 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 -6.112 -8.839 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 H 0.171 0.829 4 C 0.321 3.679 5 O -0.445 6.445 6 N -0.337 5.337 7 C -0.007 4.007 8 C -0.099 4.099 9 H 0.118 0.882 10 C -0.148 4.148 11 C 0.034 3.966 12 N -0.321 5.321 13 C -0.412 4.412 14 H 0.082 0.918 15 C -0.238 4.238 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.208 1.208 21 C 0.049 3.951 22 C -0.113 4.113 23 H 0.125 0.875 24 C -0.014 4.014 25 C 0.410 3.590 26 F -0.159 7.159 27 F -0.154 7.154 28 F -0.175 7.175 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.080 0.920 37 H -0.004 1.004 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.438 -6.880 -8.852 19.079 hybrid contribution 1.425 0.736 -0.192 1.615 sum -14.013 -6.144 -9.044 17.774 Atomic orbital electron populations 1.21847 0.86427 1.04796 1.06730 1.22674 1.03503 1.02896 0.88530 0.82872 1.19765 0.77696 0.86673 0.83778 1.90780 1.55132 1.15009 1.83539 1.48650 1.62563 1.09378 1.13135 1.22698 0.97730 0.96049 0.84205 1.22220 0.93934 0.93836 0.99953 0.88163 1.21419 0.96944 0.97541 0.98847 1.20178 0.91341 0.85953 0.99144 1.42386 1.00996 1.05305 1.83454 1.19444 1.03888 0.86736 1.31163 0.91826 1.25939 1.00441 1.00131 0.97248 1.69977 1.19222 1.30354 1.37310 0.85370 0.77632 0.80096 0.77497 1.19751 1.22007 1.20760 1.19123 0.83448 0.94521 0.97980 1.21436 0.98841 0.94187 0.96786 0.87465 1.22383 1.03031 0.78611 0.97398 1.20178 0.75094 0.77967 0.85776 1.93211 1.88204 1.37764 1.96728 1.93195 1.88281 1.80567 1.53329 1.93195 1.31040 1.96465 1.96845 0.87571 0.88029 0.91426 0.88837 0.91386 0.92224 0.93610 0.91984 1.00401 0.94182 0.96274 0.97284 0.91404 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.93 71.98 0.64 -1.10 16 2 C -0.15 -2.90 2.37 -11.54 -0.03 -2.93 16 3 H 0.15 2.24 6.96 -2.39 -0.02 2.22 16 4 C 0.53 13.71 6.59 87.66 0.58 14.29 16 5 O -0.57 -18.92 15.64 -3.05 -0.05 -18.97 16 6 N -0.61 -14.38 2.85 -808.18 -2.30 -16.69 16 7 C 0.12 2.83 6.27 87.26 0.55 3.38 16 8 C -0.08 -2.33 3.72 -9.31 -0.03 -2.36 16 9 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 10 C -0.11 -3.96 5.02 30.10 0.15 -3.81 16 11 C 0.16 7.55 5.16 86.33 0.45 8.00 16 12 N -0.60 -28.34 3.16 -726.10 -2.30 -30.64 16 13 C -0.28 -14.98 9.27 84.03 0.78 -14.20 16 14 H 0.06 3.29 7.85 -2.91 -0.02 3.27 16 15 C -0.04 -2.25 5.20 84.86 0.44 -1.80 16 16 N -0.92 -52.83 10.49 21.65 0.23 -52.60 16 17 Si 0.97 43.78 29.57 68.60 2.03 45.81 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 C 0.18 6.40 5.58 86.16 0.48 6.88 16 22 C -0.09 -2.45 2.71 -11.19 -0.03 -2.48 16 23 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 24 C 0.11 2.24 4.84 86.35 0.42 2.66 16 25 C 0.46 10.90 2.57 71.98 0.18 11.09 16 26 F -0.18 -4.81 15.46 44.97 0.70 -4.12 16 27 F -0.17 -3.53 16.73 44.97 0.75 -2.78 16 28 F -0.19 -5.50 17.02 44.97 0.77 -4.73 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.91 7.70 -2.39 -0.02 0.89 16 31 H 0.07 1.01 7.91 -2.39 -0.02 0.99 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.64 6.86 -2.39 -0.02 1.62 16 36 H 0.06 3.41 5.52 -2.39 -0.01 3.40 16 37 H -0.02 -1.18 8.12 -2.39 -0.02 -1.20 16 38 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.02 0.67 7.77 -2.39 -0.02 0.66 16 40 H 0.01 0.36 8.10 -2.39 -0.02 0.34 16 41 H 0.07 1.58 7.45 -2.39 -0.02 1.56 16 42 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -68.01 339.83 5.43 -62.58 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.03 Total: 4.52 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 4.58 Total: 17.61 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -4.37 Total: -99.93 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 2.21 Total: -11.63 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.01 5.43 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088070074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.489 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds