Wall clock time and date at job start Tue Mar 31 2020 12:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.54188 * 111.61086 * 299.02084 * 7 6 4 9 9 C 1.54092 * 104.66162 * 260.48142 * 8 7 6 10 10 C 1.54848 * 103.10306 * 322.88929 * 9 8 7 11 11 C 1.54187 * 104.29860 * 37.53204 * 10 9 8 12 12 H 1.08996 * 112.24551 * 98.78828 * 11 10 9 13 13 C 1.53792 * 109.12839 * 223.08276 * 11 10 9 14 14 N 1.47213 * 106.35712 * 132.67555 * 13 11 10 15 15 C 1.36943 * 126.70111 * 148.76097 * 14 13 11 16 16 H 1.07994 * 120.00101 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99898 * 0.02844 * 15 14 13 18 18 N 1.31619 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00025 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47134 * 119.99981 * 19 17 15 22 22 H 1.48506 * 109.47026 * 239.99475 * 19 17 15 23 23 C 1.47216 * 106.59775 * 328.76409 * 14 13 11 24 24 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 25 25 F 1.39898 * 109.46890 * 60.00473 * 24 2 1 26 26 F 1.39904 * 109.47059 * 179.97438 * 24 2 1 27 27 F 1.39895 * 109.47411 * 300.00155 * 24 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 32 32 H 1.08997 * 110.46685 * 20.29795 * 8 7 6 33 33 H 1.08996 * 110.46566 * 142.89458 * 8 7 6 34 34 H 1.09001 * 111.09846 * 204.21403 * 9 8 7 35 35 H 1.09002 * 110.22595 * 81.15919 * 9 8 7 36 36 H 1.08998 * 110.46887 * 278.82815 * 10 9 8 37 37 H 1.08998 * 110.46485 * 156.23354 * 10 9 8 38 38 H 1.09004 * 110.07560 * 251.90380 * 13 11 10 39 39 H 1.09006 * 110.07860 * 13.44955 * 13 11 10 40 40 H 0.96997 * 120.00463 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.07943 * 272.00862 * 23 14 13 42 42 H 1.09001 * 110.07852 * 150.45974 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6897 -2.3955 3.7132 9 6 0.4937 -2.3515 4.6838 10 6 0.9451 -1.3239 5.7507 11 6 1.7084 -0.2516 4.9476 12 1 1.0910 0.6207 4.7334 13 6 2.9879 0.1327 5.7094 14 7 4.0800 0.1123 4.7224 15 6 5.2013 0.8983 4.7262 16 1 5.9378 0.7922 3.9435 17 6 5.3914 1.8314 5.7362 18 7 4.4937 1.9610 6.6899 19 14 6.9207 2.9041 5.7410 20 1 7.7666 2.5654 4.5684 21 1 6.5232 4.3331 5.6690 22 1 7.6883 2.6662 6.9898 23 6 3.7311 -0.9181 3.7305 24 6 2.0401 -0.7213 -1.2492 25 9 1.5738 -0.0618 -2.3915 26 9 3.4391 -0.7208 -1.2494 27 9 1.5738 -2.0403 -1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1492 0.5389 2.5435 32 1 1.3829 -2.7351 2.7239 33 1 2.4608 -3.0498 4.1197 34 1 0.3199 -3.3276 5.1368 35 1 -0.3997 -2.0032 4.1655 36 1 1.6044 -1.7956 6.4793 37 1 0.0796 -0.8845 6.2467 38 1 2.8852 1.1316 6.1334 39 1 3.1845 -0.5915 6.5001 40 1 4.6263 2.6133 7.3955 41 1 4.1031 -1.8902 4.0540 42 1 4.1525 -0.6601 2.7589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111843029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:42 Heat of formation + Delta-G solvation = -168.457852 kcal Electronic energy + Delta-G solvation = -29184.863184 eV Core-core repulsion = 24750.211359 eV Total energy + Delta-G solvation = -4434.651825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08846 -47.61801 -47.47484 -40.43784 -38.38507 -34.59430 -34.32668 -33.26116 -31.43266 -29.49002 -27.80345 -26.60153 -24.79370 -24.71480 -23.42864 -21.31997 -20.30780 -19.69434 -19.00897 -18.60518 -18.39844 -17.58944 -16.94908 -16.36989 -15.69196 -15.38217 -14.91746 -14.62779 -14.49407 -14.19657 -14.11688 -13.92092 -13.74225 -13.66257 -13.61314 -13.51909 -13.30625 -12.76328 -12.67301 -12.49220 -12.18092 -11.68976 -11.63423 -11.47806 -11.25639 -11.03884 -10.84452 -10.75281 -10.64122 -10.29844 -10.28494 -9.96665 -9.79377 -9.66469 -9.48314 -8.81347 -8.66625 -6.89178 -5.67098 -3.11746 2.53299 2.61056 3.13701 3.37246 3.43817 3.46018 3.62855 3.96477 4.12699 4.45393 4.61440 4.66243 4.79546 4.87280 4.97813 5.17466 5.19976 5.32278 5.45405 5.64509 5.66673 5.73633 5.78349 5.84212 5.96641 6.03670 6.07379 6.21760 6.34761 6.43058 6.50508 6.63708 6.71897 6.80129 7.06596 7.42096 7.56794 7.63144 7.80085 8.27347 8.36168 9.18681 9.78895 10.46032 11.33914 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.004653 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.543142 B = 6015.889357 C = 7398.145529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.166 4.166 3 H 0.138 0.862 4 C 0.520 3.480 5 O -0.518 6.518 6 N -0.694 5.694 7 C 0.161 3.839 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.113 4.113 11 C -0.112 4.112 12 H 0.074 0.926 13 C 0.139 3.861 14 N -0.597 5.597 15 C -0.214 4.214 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.136 3.864 24 C 0.474 3.526 25 F -0.185 7.185 26 F -0.171 7.171 27 F -0.173 7.173 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.013 0.987 40 H 0.252 0.748 41 H 0.028 0.972 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 -3.767 -10.698 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 H 0.156 0.844 4 C 0.303 3.697 5 O -0.393 6.393 6 N -0.344 5.344 7 C 0.075 3.925 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.151 4.151 11 C -0.133 4.133 12 H 0.093 0.907 13 C 0.013 3.987 14 N -0.321 5.321 15 C -0.343 4.343 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.009 3.991 24 C 0.419 3.581 25 F -0.167 7.167 26 F -0.152 7.152 27 F -0.154 7.154 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.202 -4.322 -10.668 16.775 hybrid contribution 0.636 0.914 -0.184 1.129 sum -11.567 -3.408 -10.852 16.223 Atomic orbital electron populations 1.21822 0.89534 1.04546 1.04669 1.22678 1.01125 1.03281 0.91785 0.84407 1.19585 0.80995 0.84948 0.84122 1.90805 1.36668 1.25545 1.86313 1.45868 1.52594 1.31310 1.04667 1.21833 0.96183 0.91348 0.83154 1.22491 0.97990 0.95528 0.99605 1.22402 0.97752 0.99072 0.96891 1.22445 0.99458 0.95801 0.97403 1.23014 0.99804 0.96752 0.93687 0.90744 1.22086 0.82474 1.04159 0.89936 1.44589 1.21740 1.39976 1.25787 1.19159 0.96083 1.11339 1.07691 0.90423 1.24751 0.98888 0.99958 0.97159 1.69600 1.34558 1.38195 1.14864 0.85989 0.82066 0.80061 0.77387 1.20525 1.21768 1.21709 1.21649 0.90542 0.92854 0.94093 1.19764 0.76108 0.77797 0.84421 1.93167 1.88638 1.80919 1.53934 1.93237 1.29062 1.96319 1.96626 1.93193 1.88309 1.37254 1.96662 0.90632 0.89736 0.90161 0.76692 0.91163 0.90835 0.91934 0.92304 0.91008 0.92000 0.85943 0.96943 0.93737 0.95452 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.85 37.16 0.33 -0.81 16 2 C -0.17 -1.81 2.71 -91.77 -0.25 -2.06 16 3 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.52 7.69 5.91 -10.98 -0.06 7.63 16 5 O -0.52 -9.57 12.41 5.56 0.07 -9.50 16 6 N -0.69 -10.01 5.12 -45.83 -0.23 -10.24 16 7 C 0.16 2.77 0.93 -129.89 -0.12 2.65 16 8 C -0.12 -1.82 5.60 -25.54 -0.14 -1.97 16 9 C -0.12 -1.61 6.86 -25.19 -0.17 -1.78 16 10 C -0.11 -1.65 6.38 -25.14 -0.16 -1.81 16 11 C -0.11 -1.95 3.67 -88.69 -0.33 -2.27 16 12 H 0.07 1.20 7.69 -51.93 -0.40 0.81 16 13 C 0.14 3.20 5.77 -3.24 -0.02 3.18 16 14 N -0.60 -15.05 3.39 -171.11 -0.58 -15.63 16 15 C -0.21 -5.94 10.34 -15.06 -0.16 -6.10 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -26.11 10.08 55.49 0.56 -25.55 16 19 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.14 2.97 6.04 -3.24 -0.02 2.95 16 24 C 0.47 6.10 2.42 37.16 0.09 6.19 16 25 F -0.19 -2.13 16.80 2.25 0.04 -2.09 16 26 F -0.17 -2.65 16.40 2.25 0.04 -2.62 16 27 F -0.17 -2.44 15.88 2.25 0.04 -2.40 16 28 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 29 H 0.08 0.52 7.56 -51.93 -0.39 0.12 16 30 H 0.08 0.50 7.80 -51.93 -0.41 0.10 16 31 H 0.40 4.68 7.70 -40.82 -0.31 4.37 16 32 H 0.07 1.11 6.66 -51.93 -0.35 0.77 16 33 H 0.07 1.21 7.23 -51.93 -0.38 0.84 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.13 7.17 -51.93 -0.37 0.75 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 3.19 5.45 -51.93 -0.28 2.90 16 39 H 0.01 0.31 7.12 -51.93 -0.37 -0.06 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.03 0.62 7.19 -51.93 -0.37 0.25 16 42 H 0.05 1.12 6.84 -51.93 -0.36 0.77 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -31.42 336.83 -6.76 -38.18 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.63 Total: 2.54 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.11 Total: 5.35 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.26 Total: -51.42 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.11 Total: -7.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.42 -6.76 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111843029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.277 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds