Wall clock time and date at job start Tue Mar 31 2020 12:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.54188 * 111.61086 * 299.02084 * 7 6 4 9 9 C 1.54092 * 104.66162 * 260.48142 * 8 7 6 10 10 C 1.54848 * 103.10306 * 322.88929 * 9 8 7 11 11 C 1.54187 * 104.29860 * 37.53204 * 10 9 8 12 12 H 1.08996 * 112.24551 * 98.78828 * 11 10 9 13 13 C 1.53792 * 109.12839 * 223.08276 * 11 10 9 14 14 N 1.47213 * 106.35712 * 132.67555 * 13 11 10 15 15 C 1.36943 * 126.70111 * 148.76097 * 14 13 11 16 16 H 1.07994 * 120.00101 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99898 * 0.02844 * 15 14 13 18 18 N 1.31619 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00025 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47134 * 119.99981 * 19 17 15 22 22 H 1.48506 * 109.47026 * 239.99475 * 19 17 15 23 23 C 1.47216 * 106.59775 * 328.76409 * 14 13 11 24 24 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 25 25 F 1.39898 * 109.46890 * 60.00473 * 24 2 1 26 26 F 1.39904 * 109.47059 * 179.97438 * 24 2 1 27 27 F 1.39895 * 109.47411 * 300.00155 * 24 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 32 32 H 1.08997 * 110.46685 * 20.29795 * 8 7 6 33 33 H 1.08996 * 110.46566 * 142.89458 * 8 7 6 34 34 H 1.09001 * 111.09846 * 204.21403 * 9 8 7 35 35 H 1.09002 * 110.22595 * 81.15919 * 9 8 7 36 36 H 1.08998 * 110.46887 * 278.82815 * 10 9 8 37 37 H 1.08998 * 110.46485 * 156.23354 * 10 9 8 38 38 H 1.09004 * 110.07560 * 251.90380 * 13 11 10 39 39 H 1.09006 * 110.07860 * 13.44955 * 13 11 10 40 40 H 0.96997 * 120.00463 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.07943 * 272.00862 * 23 14 13 42 42 H 1.09001 * 110.07852 * 150.45974 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6897 -2.3955 3.7132 9 6 0.4937 -2.3515 4.6838 10 6 0.9451 -1.3239 5.7507 11 6 1.7084 -0.2516 4.9476 12 1 1.0910 0.6207 4.7334 13 6 2.9879 0.1327 5.7094 14 7 4.0800 0.1123 4.7224 15 6 5.2013 0.8983 4.7262 16 1 5.9378 0.7922 3.9435 17 6 5.3914 1.8314 5.7362 18 7 4.4937 1.9610 6.6899 19 14 6.9207 2.9041 5.7410 20 1 7.7666 2.5654 4.5684 21 1 6.5232 4.3331 5.6690 22 1 7.6883 2.6662 6.9898 23 6 3.7311 -0.9181 3.7305 24 6 2.0401 -0.7213 -1.2492 25 9 1.5738 -0.0618 -2.3915 26 9 3.4391 -0.7208 -1.2494 27 9 1.5738 -2.0403 -1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1492 0.5389 2.5435 32 1 1.3829 -2.7351 2.7239 33 1 2.4608 -3.0498 4.1197 34 1 0.3199 -3.3276 5.1368 35 1 -0.3997 -2.0032 4.1655 36 1 1.6044 -1.7956 6.4793 37 1 0.0796 -0.8845 6.2467 38 1 2.8852 1.1316 6.1334 39 1 3.1845 -0.5915 6.5001 40 1 4.6263 2.6133 7.3955 41 1 4.1031 -1.8902 4.0540 42 1 4.1525 -0.6601 2.7589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111843029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:42 Heat of formation + Delta-G solvation = -188.459155 kcal Electronic energy + Delta-G solvation = -29185.730506 eV Core-core repulsion = 24750.211359 eV Total energy + Delta-G solvation = -4435.519147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.11894 -48.62120 -48.56925 -41.76289 -39.73755 -36.36107 -35.37106 -34.38817 -33.37205 -30.97241 -29.44236 -27.39781 -26.44605 -26.35062 -24.61135 -22.67542 -21.85570 -20.90253 -20.34801 -19.69033 -19.46467 -19.06608 -18.39823 -17.59158 -17.11216 -16.78250 -16.52971 -15.89813 -15.66295 -15.43689 -15.39055 -15.15704 -15.04245 -14.95574 -14.76243 -14.69795 -14.32590 -14.18624 -13.92754 -13.52437 -13.35874 -13.19259 -13.05006 -12.86586 -12.81200 -12.53405 -12.34280 -12.24585 -12.03290 -11.85090 -11.78963 -11.64830 -11.40086 -11.23617 -10.85868 -10.79366 -10.07447 -8.92624 -7.77003 -5.25318 1.44744 1.45612 1.47144 1.53174 1.56091 2.04192 2.46669 2.66149 3.01785 3.10520 3.28747 3.44742 3.56863 3.70012 3.82806 3.87132 4.00418 4.03381 4.36605 4.46074 4.47563 4.61399 4.66492 4.71048 4.74918 4.82751 4.85488 4.96768 5.06224 5.13021 5.13504 5.24719 5.30280 5.42138 5.51876 5.59813 5.68344 5.80602 6.35949 6.46637 7.09674 7.14496 7.73974 8.41259 9.20806 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.004653 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.543142 B = 6015.889357 C = 7398.145529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.155 4.155 3 H 0.162 0.838 4 C 0.516 3.484 5 O -0.560 6.560 6 N -0.686 5.686 7 C 0.172 3.828 8 C -0.113 4.113 9 C -0.108 4.108 10 C -0.109 4.109 11 C -0.100 4.100 12 H 0.095 0.905 13 C 0.142 3.858 14 N -0.617 5.617 15 C -0.237 4.237 16 H 0.068 0.932 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.977 3.023 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.291 1.291 23 C 0.136 3.864 24 C 0.468 3.532 25 F -0.175 7.175 26 F -0.192 7.192 27 F -0.182 7.182 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.415 0.585 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.095 0.905 39 H -0.012 1.012 40 H 0.250 0.750 41 H 0.010 0.990 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 -2.981 -11.360 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 H 0.179 0.821 4 C 0.302 3.698 5 O -0.438 6.438 6 N -0.337 5.337 7 C 0.085 3.915 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.147 4.147 11 C -0.120 4.120 12 H 0.113 0.887 13 C 0.017 3.983 14 N -0.341 5.341 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.250 4.250 18 N -0.591 5.591 19 Si 0.805 3.195 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.218 1.218 23 C 0.009 3.991 24 C 0.413 3.587 25 F -0.156 7.156 26 F -0.174 7.174 27 F -0.164 7.164 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.006 0.994 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.698 -3.527 -11.346 18.900 hybrid contribution 1.490 0.638 0.000 1.621 sum -13.208 -2.888 -11.346 17.650 Atomic orbital electron populations 1.21923 0.86473 1.04941 1.06835 1.22712 1.03411 1.03197 0.88375 0.82099 1.20224 0.80042 0.84470 0.85088 1.90793 1.38441 1.27597 1.86988 1.45697 1.52515 1.31709 1.03828 1.21519 0.92633 0.92998 0.84387 1.22427 0.98771 0.93679 1.00359 1.22350 0.97103 0.99621 0.95482 1.22404 0.99665 0.95275 0.97312 1.22889 0.97423 0.98523 0.93213 0.88678 1.21940 0.84618 1.01890 0.89895 1.44832 1.21866 1.40343 1.27020 1.19368 0.97209 1.12187 1.07823 0.91359 1.25492 1.01634 1.01065 0.96854 1.69840 1.35733 1.38462 1.15066 0.85039 0.78848 0.78408 0.77186 1.20013 1.21097 1.21799 1.21712 0.94257 0.91025 0.92071 1.20109 0.75212 0.77721 0.85609 1.93183 1.88345 1.80568 1.53532 1.93197 1.30968 1.96402 1.96790 1.93171 1.88269 1.38170 1.96774 0.91137 0.87436 0.88155 0.74745 0.91178 0.92671 0.90098 0.89675 0.92724 0.89247 0.88738 0.99428 0.94012 0.97230 0.95483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.85 71.98 0.64 -1.05 16 2 C -0.15 -3.02 2.71 -11.54 -0.03 -3.05 16 3 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.52 14.63 5.91 87.66 0.52 15.15 16 5 O -0.56 -20.83 12.41 -3.02 -0.04 -20.87 16 6 N -0.69 -18.51 5.12 -417.30 -2.14 -20.65 16 7 C 0.17 5.79 0.93 4.85 0.00 5.79 16 8 C -0.11 -3.39 5.60 31.37 0.18 -3.21 16 9 C -0.11 -2.44 6.86 31.59 0.22 -2.23 16 10 C -0.11 -2.91 6.38 31.63 0.20 -2.71 16 11 C -0.10 -3.35 3.67 -9.54 -0.03 -3.39 16 12 H 0.10 2.81 7.69 -2.39 -0.02 2.79 16 13 C 0.14 6.68 5.77 86.51 0.50 7.18 16 14 N -0.62 -32.15 3.39 -695.28 -2.36 -34.50 16 15 C -0.24 -13.55 10.34 84.03 0.87 -12.68 16 16 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 17 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 18 N -0.94 -54.28 10.08 21.65 0.22 -54.06 16 19 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 C 0.14 6.17 6.04 86.51 0.52 6.69 16 24 C 0.47 11.48 2.42 71.98 0.17 11.66 16 25 F -0.17 -3.67 16.80 44.97 0.76 -2.92 16 26 F -0.19 -5.96 16.40 44.97 0.74 -5.23 16 27 F -0.18 -5.01 15.88 44.97 0.71 -4.30 16 28 H 0.07 0.94 7.80 -2.39 -0.02 0.92 16 29 H 0.11 0.79 7.56 -2.39 -0.02 0.78 16 30 H 0.10 0.83 7.80 -2.39 -0.02 0.81 16 31 H 0.41 8.41 7.70 -92.70 -0.71 7.70 16 32 H 0.07 2.12 6.66 -2.39 -0.02 2.10 16 33 H 0.05 1.83 7.23 -2.39 -0.02 1.82 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.67 7.17 -2.39 -0.02 1.65 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.09 5.04 5.45 -2.39 -0.01 5.02 16 39 H -0.01 -0.62 7.12 -2.38 -0.02 -0.64 16 40 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.01 0.48 7.19 -2.39 -0.02 0.46 16 42 H 0.03 1.31 6.84 -2.39 -0.02 1.29 16 Total: -1.00 -71.74 336.83 4.49 -67.25 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.35 Total: 12.27 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 4.22 Total: 15.39 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.27 Total: -109.22 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.04 Total: -20.87 kcal Atomic # 9 Polarization: -14.65 SS G_CDS: 2.21 Total: -12.44 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.74 4.49 -67.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111843029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.212 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds