Wall clock time and date at job start Tue Mar 31 2020 13:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46839 * 2 1 4 4 C 1.34228 * 116.99648 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00485 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00133 * 179.97438 * 4 3 2 7 7 H 1.09007 * 109.54228 * 59.88907 * 6 4 3 8 8 C 1.53096 * 109.50597 * 299.78614 * 6 4 3 9 9 O 1.43015 * 109.26187 * 183.21669 * 8 6 4 10 10 C 1.43018 * 113.73938 * 58.66183 * 9 8 6 11 11 C 1.53095 * 109.26219 * 301.33532 * 10 9 8 12 12 N 1.47014 * 109.50951 * 179.97438 * 6 4 3 13 13 C 1.38083 * 111.00038 * 302.32830 * 12 6 4 14 14 N 1.32278 * 119.90450 * 112.17634 * 13 12 6 15 15 C 1.31961 * 121.86454 * 180.24561 * 14 13 12 16 16 C 1.50695 * 119.27932 * 179.74443 * 15 14 13 17 17 C 1.38691 * 121.44659 * 359.76418 * 15 14 13 18 18 C 1.38003 * 119.62834 * 359.97438 * 17 15 14 19 19 C 1.41004 * 118.27918 * 359.97438 * 18 17 15 20 20 C 1.41020 * 120.70269 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00173 * 203.42464 * 20 19 18 22 22 C 1.39947 * 120.00054 * 23.70015 * 20 19 18 23 23 N 1.30877 * 120.00055 * 15.00239 * 22 20 19 24 24 Si 1.86801 * 120.00198 * 195.00312 * 22 20 19 25 25 H 1.48494 * 109.47272 * 89.99876 * 24 22 20 26 26 H 1.48503 * 109.47002 * 210.00101 * 24 22 20 27 27 H 1.48500 * 109.46626 * 329.99611 * 24 22 20 28 28 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47397 * 300.00069 * 1 2 3 30 30 H 1.09003 * 109.47311 * 60.00160 * 1 2 3 31 31 H 1.08998 * 109.47397 * 239.99930 * 2 1 3 32 32 H 1.09003 * 109.47311 * 119.99840 * 2 1 3 33 33 H 1.08990 * 109.51106 * 63.27718 * 8 6 4 34 34 H 1.09003 * 109.50570 * 303.14252 * 8 6 4 35 35 H 1.08997 * 109.50636 * 181.39789 * 10 9 8 36 36 H 1.08999 * 109.50267 * 61.27202 * 10 9 8 37 37 H 1.09001 * 109.50783 * 296.91379 * 11 10 9 38 38 H 1.08997 * 109.51073 * 176.78119 * 11 10 9 39 39 H 1.08996 * 109.47193 * 270.02714 * 16 15 14 40 40 H 1.09004 * 109.47033 * 30.01695 * 16 15 14 41 41 H 1.09001 * 109.47753 * 150.01910 * 16 15 14 42 42 H 1.07998 * 120.18035 * 179.97438 * 17 15 14 43 43 H 1.07996 * 120.86007 * 180.02562 * 18 17 15 44 44 H 0.96996 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5834 3.4719 0.8882 8 6 3.4543 3.6831 -1.2531 9 8 4.0634 4.9766 -1.2866 10 6 5.4931 4.9398 -1.2873 11 6 5.9802 4.2070 -0.0346 12 7 5.3889 2.8614 0.0014 13 6 5.8465 2.1482 1.0916 14 7 6.4271 0.9729 0.9144 15 6 6.8741 0.2567 1.9286 16 6 7.5210 -1.0776 1.6601 17 6 6.7612 0.7048 3.2362 18 6 6.1701 1.9257 3.4904 19 6 5.6982 2.6801 2.3966 20 6 5.0854 3.9341 2.5977 21 1 4.4068 4.3288 1.8559 22 6 5.3608 4.6699 3.7559 23 7 6.3873 4.3534 4.5035 24 14 4.2633 6.1037 4.2347 25 1 3.1635 5.6160 5.1052 26 1 5.0639 7.1161 4.9690 27 1 3.6903 6.7186 3.0106 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3701 3.7919 -1.2295 34 1 3.7451 3.1209 -2.1406 35 1 5.8834 5.9576 -1.2885 36 1 5.8432 4.4142 -2.1757 37 1 5.6759 4.7616 0.8531 38 1 7.0669 4.1264 -0.0593 39 1 6.7613 -1.8590 1.6737 40 1 8.0037 -1.0573 0.6830 41 1 8.2660 -1.2816 2.4292 42 1 7.1338 0.1017 4.0509 43 1 6.0722 2.2941 4.5009 44 1 6.5780 4.8632 5.3064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157336231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:20 Heat of formation + Delta-G solvation = -86.940185 kcal Electronic energy + Delta-G solvation = -29065.198130 eV Core-core repulsion = 25175.937917 eV Total energy + Delta-G solvation = -3889.260213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14594 -40.72612 -39.60565 -37.65056 -36.70491 -35.88989 -33.19504 -32.64352 -32.06189 -32.02856 -29.56835 -28.45669 -26.11096 -25.64356 -24.14605 -22.92369 -22.88570 -22.41953 -21.07782 -19.34961 -18.84210 -18.13252 -17.89680 -17.51287 -16.91310 -16.90204 -16.38114 -16.06113 -15.84136 -15.65477 -15.32412 -15.04403 -14.71005 -14.52414 -14.37853 -13.80812 -13.79255 -13.58065 -13.42363 -13.20790 -13.18750 -12.92941 -12.77800 -12.61661 -12.59448 -12.51705 -12.37301 -12.15754 -11.81602 -11.68921 -11.51168 -11.34755 -11.17522 -10.72914 -10.14355 -10.01952 -9.41418 -9.04104 -8.61976 -6.43445 0.68126 1.06820 1.23934 1.36055 1.48152 1.49556 1.55639 2.12981 2.64822 2.68621 2.98291 3.53633 3.64500 3.87352 3.96976 4.01259 4.11000 4.19269 4.27752 4.32007 4.37081 4.40628 4.51666 4.60140 4.64920 4.67168 4.74369 4.83555 4.91756 4.92313 4.93859 4.98345 5.05364 5.13025 5.24952 5.26685 5.31867 5.44623 5.64827 5.87145 5.97512 5.99481 6.08849 6.15402 6.53262 6.68746 6.82277 6.93395 7.93157 8.19308 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.006838 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.345128 B = 4093.838767 C = 5049.146629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.459 3.541 5 O -0.493 6.493 6 C 0.055 3.945 7 H 0.092 0.908 8 C 0.088 3.912 9 O -0.381 6.381 10 C 0.070 3.930 11 C 0.010 3.990 12 N -0.462 5.462 13 C 0.162 3.838 14 N -0.437 5.437 15 C -0.017 4.017 16 C -0.064 4.064 17 C -0.155 4.155 18 C -0.159 4.159 19 C 0.019 3.981 20 C -0.472 4.472 21 H 0.095 0.905 22 C 0.041 3.959 23 N -0.813 5.813 24 Si 0.972 3.028 25 H -0.264 1.264 26 H -0.267 1.267 27 H -0.249 1.249 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 -0.089 -6.044 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.300 3.700 5 O -0.378 6.378 6 C -0.055 4.055 7 H 0.109 0.891 8 C 0.011 3.989 9 O -0.299 6.299 10 C -0.007 4.007 11 C -0.117 4.117 12 N -0.186 5.186 13 C -0.071 4.071 14 N -0.146 5.146 15 C -0.158 4.158 16 C -0.122 4.122 17 C -0.175 4.175 18 C -0.186 4.186 19 C 0.012 3.988 20 C -0.501 4.501 21 H 0.112 0.888 22 C -0.176 4.176 23 N -0.438 5.438 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.191 1.191 27 H -0.172 1.172 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.906 -0.762 -7.129 10.673 hybrid contribution 0.052 0.525 2.394 2.452 sum -7.854 -0.237 -4.735 9.174 Atomic orbital electron populations 1.21802 0.89478 1.04459 1.03937 1.23233 0.97536 0.79340 1.01742 1.86464 1.23399 1.33646 1.84359 1.23514 0.80978 0.92484 0.73002 1.90761 1.60465 1.42989 1.43551 1.22142 0.89537 0.90377 1.03404 0.89126 1.22609 0.99449 0.83628 0.93220 1.87966 1.20255 1.27129 1.94551 1.22845 0.80118 1.02002 0.95689 1.23110 0.99347 0.88111 1.01103 1.58306 1.03274 1.15547 1.41438 1.19208 1.06999 0.93672 0.87222 1.66473 1.06881 1.05223 1.36001 1.20931 1.06949 0.99264 0.88648 1.20274 0.98998 0.91218 1.01669 1.21774 1.01427 0.96975 0.97311 1.21713 1.03358 0.94095 0.99395 1.19226 0.92705 0.94647 0.92248 1.19787 1.23941 1.01484 1.04871 0.88763 1.26745 0.95066 1.01178 0.94653 1.69853 1.22859 1.38123 1.12924 0.85313 0.78598 0.76971 0.79862 1.18890 1.19098 1.17206 0.88027 0.91569 0.90371 0.91323 0.93212 0.84979 0.91598 0.85540 0.91752 0.90469 0.91404 0.92371 0.92589 0.90475 0.86039 0.86403 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.06 1.53 6.19 71.98 0.45 1.98 16 3 O -0.36 -12.25 10.15 -51.40 -0.52 -12.77 16 4 C 0.46 18.92 6.98 71.24 0.50 19.42 16 5 O -0.49 -23.79 13.52 21.97 0.30 -23.49 16 6 C 0.05 2.17 2.17 44.18 0.10 2.27 16 7 H 0.09 3.90 5.01 -2.38 -0.01 3.88 16 8 C 0.09 2.74 6.22 72.01 0.45 3.19 16 9 O -0.38 -12.02 10.83 -148.98 -1.61 -13.64 16 10 C 0.07 2.13 7.01 72.01 0.50 2.63 16 11 C 0.01 0.40 5.15 86.31 0.44 0.85 16 12 N -0.46 -20.70 4.42 -679.52 -3.01 -23.71 16 13 C 0.16 8.34 4.25 134.05 0.57 8.91 16 14 N -0.44 -23.09 8.73 -179.58 -1.57 -24.66 16 15 C -0.02 -0.85 6.79 42.65 0.29 -0.56 16 16 C -0.06 -2.45 10.15 71.23 0.72 -1.73 16 17 C -0.15 -7.53 9.69 22.32 0.22 -7.32 16 18 C -0.16 -8.44 8.80 22.89 0.20 -8.24 16 19 C 0.02 1.00 5.36 -21.06 -0.11 0.89 16 20 C -0.47 -23.39 6.00 23.37 0.14 -23.25 16 21 H 0.09 4.48 3.92 -2.91 -0.01 4.47 16 22 C 0.04 1.90 5.23 85.25 0.45 2.35 16 23 N -0.81 -39.97 10.78 21.83 0.24 -39.73 16 24 Si 0.97 35.60 29.59 68.60 2.03 37.62 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 27 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 32 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 3.38 4.40 -2.39 -0.01 3.37 16 38 H 0.07 2.82 8.13 -2.39 -0.02 2.80 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 42 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 43 H 0.12 6.38 6.09 -2.91 -0.02 6.36 16 44 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 Total: -1.00 -66.82 351.16 2.53 -64.29 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 1.02 Total: 36.51 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.65 Total: -0.43 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.34 Total: -88.10 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.84 Total: -49.90 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.62 kcal Total: -66.82 2.53 -64.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157336231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.646 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds