Wall clock time and date at job start Tue Mar 31 2020 13:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47170 * 2 1 4 4 C 1.35054 * 117.00107 * 180.02562 * 3 2 1 5 5 O 1.21808 * 120.00108 * 359.97438 * 4 3 2 6 6 C 1.40354 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.36260 * 120.00489 * 179.97438 * 6 4 3 8 8 N 1.37133 * 120.00053 * 179.97438 * 7 6 4 9 9 C 1.38647 * 119.99908 * 273.70445 * 8 7 6 10 10 C 1.39643 * 119.42243 * 5.13216 * 9 8 7 11 11 C 1.36601 * 119.48981 * 180.02562 * 10 9 8 12 12 C 1.41307 * 118.40344 * 359.95633 * 11 10 9 13 13 C 1.41184 * 120.57469 * 180.29702 * 12 11 10 14 14 H 1.07993 * 119.99879 * 149.90330 * 13 12 11 15 15 C 1.39889 * 120.00094 * 329.90335 * 13 12 11 16 16 N 1.30878 * 119.99932 * 165.96358 * 15 13 12 17 17 Si 1.86806 * 120.00080 * 345.95914 * 15 13 12 18 18 H 1.48499 * 109.46787 * 92.20507 * 17 15 13 19 19 H 1.48495 * 109.47276 * 212.20937 * 17 15 13 20 20 H 1.48501 * 109.46828 * 332.21096 * 17 15 13 21 21 C 1.40786 * 118.84638 * 0.02562 * 12 11 10 22 22 C 1.50701 * 119.81609 * 179.97438 * 21 12 11 23 23 N 1.31455 * 120.36443 * 0.02562 * 21 12 11 24 24 O 1.34969 * 119.99548 * 359.97438 * 7 6 4 25 25 C 1.42902 * 116.99611 * 175.57516 * 24 7 6 26 26 C 1.53000 * 109.47121 * 183.96837 * 25 24 7 27 27 H 1.08998 * 109.47210 * 300.00001 * 1 2 3 28 28 H 1.09004 * 109.47238 * 60.00314 * 1 2 3 29 29 H 1.09002 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47210 * 239.99999 * 2 1 3 31 31 H 1.09004 * 109.47238 * 119.99686 * 2 1 3 32 32 H 1.08006 * 119.99536 * 359.97438 * 6 4 3 33 33 H 0.96999 * 119.99596 * 93.70804 * 8 7 6 34 34 H 1.07994 * 120.25716 * 359.97438 * 10 9 8 35 35 H 1.08007 * 120.79569 * 179.97438 * 11 10 9 36 36 H 0.97000 * 119.99723 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47090 * 90.00286 * 22 21 12 38 38 H 1.09006 * 109.46530 * 210.00374 * 22 21 12 39 39 H 1.08996 * 109.47019 * 329.99569 * 22 21 12 40 40 H 1.09000 * 109.47086 * 303.96465 * 25 24 7 41 41 H 1.08994 * 109.47521 * 63.96805 * 25 24 7 42 42 H 1.08994 * 109.47412 * 304.88169 * 26 25 24 43 43 H 1.09007 * 109.47304 * 64.87553 * 26 25 24 44 44 H 1.09000 * 109.47375 * 184.87645 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3452 1.5243 -0.0005 5 8 4.0873 0.5583 -0.0005 6 6 3.8817 2.8213 0.0000 7 6 5.2326 2.9999 0.0000 8 7 5.7567 4.2671 -0.0001 9 6 5.9499 4.9373 -1.1983 10 6 5.5081 4.3558 -2.3886 11 6 5.6982 5.0147 -3.5700 12 6 6.3406 6.2730 -3.5420 13 6 6.5550 6.9965 -4.7352 14 1 6.5762 8.0761 -4.7157 15 6 6.7400 6.3151 -5.9428 16 7 6.6643 6.9624 -7.0778 17 14 7.0953 4.4811 -5.9355 18 1 5.8195 3.7294 -6.0474 19 1 7.9722 4.1421 -7.0849 20 1 7.7765 4.1140 -4.6680 21 6 6.7579 6.7952 -2.3030 22 6 7.4457 8.1350 -2.2479 23 7 6.5518 6.1201 -1.1940 24 8 6.0547 1.9295 0.0000 25 6 7.4567 2.1883 -0.0983 26 6 8.2154 0.8624 -0.1825 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2238 3.6778 0.0004 33 1 5.9922 4.6945 0.8382 34 1 5.0205 3.3923 -2.3753 35 1 5.3652 4.5844 -4.5029 36 1 6.7930 6.4899 -7.9151 37 1 6.7009 8.9209 -2.1229 38 1 8.1382 8.1535 -1.4062 39 1 7.9956 8.2994 -3.1745 40 1 7.6554 2.7781 -0.9932 41 1 7.7868 2.7406 0.7815 42 1 7.9494 0.2368 0.6695 43 1 7.9495 0.3496 -1.1068 44 1 9.2880 1.0561 -0.1701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162425860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:35 Heat of formation + Delta-G solvation = -74.136184 kcal Electronic energy + Delta-G solvation = -27120.985896 eV Core-core repulsion = 23232.280906 eV Total energy + Delta-G solvation = -3888.704990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64233 -39.74648 -38.72172 -36.36634 -35.63091 -33.82741 -32.32811 -31.81413 -31.69519 -30.79481 -29.78661 -27.30199 -25.03032 -24.09656 -22.94911 -22.30446 -22.01691 -20.72460 -19.83115 -18.28753 -17.90634 -17.24146 -16.97486 -16.39596 -16.23623 -15.71846 -15.29856 -14.95746 -14.63295 -13.99334 -13.72238 -13.60667 -13.49111 -13.09615 -12.96855 -12.91098 -12.78796 -12.63244 -12.42191 -12.04412 -11.92634 -11.90852 -11.63734 -11.54638 -11.46789 -11.31950 -10.92464 -10.86394 -10.49201 -10.33759 -10.12866 -9.97417 -9.79601 -9.35497 -8.61909 -8.55833 -8.35102 -7.31046 -7.07049 -4.54208 1.16998 2.24151 2.47718 2.88365 2.98265 3.08506 3.16543 3.25026 3.32434 3.61951 3.82792 4.38511 4.89707 4.95857 4.96665 5.03578 5.20136 5.23012 5.31563 5.33277 5.50949 5.53949 5.70761 5.71580 5.77183 5.82257 5.87582 5.96457 5.98853 6.05725 6.11303 6.18868 6.48334 6.51978 6.61129 6.67278 6.72093 6.88549 6.97433 7.12139 7.42988 7.46893 7.87140 7.88543 8.16064 8.19273 8.35086 8.60148 9.21272 9.94028 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003815 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.545305 B = 7336.824972 C = 7873.209514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.359 6.359 4 C 0.508 3.492 5 O -0.515 6.515 6 C -0.304 4.304 7 C 0.448 3.552 8 N -0.710 5.710 9 C 0.247 3.753 10 C -0.163 4.163 11 C -0.174 4.174 12 C 0.028 3.972 13 C -0.428 4.428 14 H 0.099 0.901 15 C 0.082 3.918 16 N -0.803 5.803 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.248 1.248 21 C 0.057 3.943 22 C -0.074 4.074 23 N -0.489 5.489 24 O -0.291 6.291 25 C 0.052 3.948 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.413 0.587 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.287 0.713 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -9.379 10.912 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.277 6.277 4 C 0.358 3.642 5 O -0.407 6.407 6 C -0.326 4.326 7 C 0.304 3.696 8 N -0.362 5.362 9 C 0.021 3.979 10 C -0.186 4.186 11 C -0.200 4.200 12 C 0.022 3.978 13 C -0.457 4.457 14 H 0.117 0.883 15 C -0.137 4.137 16 N -0.427 5.427 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.215 1.215 20 H -0.171 1.171 21 C -0.086 4.086 22 C -0.132 4.132 23 N -0.203 5.203 24 O -0.196 6.196 25 C -0.024 4.024 26 C -0.205 4.205 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.252 0.748 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.588 -9.676 11.298 15.099 hybrid contribution -0.090 -0.954 -0.708 1.192 sum -2.678 -10.631 10.590 15.243 Atomic orbital electron populations 1.21796 0.93078 1.02555 1.03394 1.22481 0.94975 0.81609 1.02040 1.86225 1.24918 1.31211 1.85373 1.19192 0.80199 0.90455 0.74346 1.90939 1.59525 1.42994 1.47265 1.20266 0.90996 0.96484 1.24864 1.18738 0.88271 0.78801 0.83747 1.41052 1.74162 1.13108 1.07863 1.17226 1.04878 0.92152 0.83620 1.20725 1.04625 1.00681 0.92601 1.21003 1.04133 0.98221 0.96627 1.18382 0.92635 0.92262 0.94490 1.19352 1.40678 0.96530 0.89188 0.88338 1.26139 0.91785 1.00991 0.94780 1.69666 1.34627 1.39468 0.98983 0.86390 0.79183 0.81991 0.78922 1.19506 1.21517 1.17131 1.20798 1.02910 0.97641 0.87247 1.20325 0.98854 0.92149 1.01874 1.66200 1.15285 1.06188 1.32603 1.86457 1.18328 1.31612 1.83236 1.22772 0.78217 0.99097 1.02283 1.21743 0.99143 0.96098 1.03506 0.91663 0.91546 0.90665 0.91891 0.91978 0.82765 0.74753 0.87780 0.86896 0.90221 0.92677 0.92926 0.90662 0.91153 0.91861 0.91534 0.91571 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.94 16 2 C 0.06 0.76 6.10 37.15 0.23 0.99 16 3 O -0.36 -5.39 10.10 -41.47 -0.42 -5.81 16 4 C 0.51 8.55 7.65 31.53 0.24 8.79 16 5 O -0.52 -9.72 14.61 -27.26 -0.40 -10.12 16 6 C -0.30 -4.88 9.43 -39.50 -0.37 -5.25 16 7 C 0.45 7.31 5.20 -15.89 -0.08 7.23 16 8 N -0.71 -11.59 4.31 -12.08 -0.05 -11.64 16 9 C 0.25 4.97 7.06 -154.90 -1.09 3.87 16 10 C -0.16 -3.49 9.21 -39.65 -0.37 -3.85 16 11 C -0.17 -4.04 7.14 -39.01 -0.28 -4.32 16 12 C 0.03 0.67 5.15 -106.65 -0.55 0.12 16 13 C -0.43 -10.70 8.56 -37.85 -0.32 -11.03 16 14 H 0.10 2.53 7.24 -52.49 -0.38 2.15 16 15 C 0.08 2.04 5.46 -17.34 -0.09 1.94 16 16 N -0.80 -20.27 13.93 55.54 0.77 -19.50 16 17 Si 0.91 19.95 24.43 -169.99 -4.15 15.80 16 18 H -0.27 -5.80 6.60 56.52 0.37 -5.42 16 19 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.25 -5.60 6.77 56.52 0.38 -5.22 16 21 C 0.06 1.26 6.86 -81.79 -0.56 0.70 16 22 C -0.07 -1.41 9.58 36.01 0.35 -1.07 16 23 N -0.49 -10.40 10.29 -8.00 -0.08 -10.48 16 24 O -0.29 -4.83 7.86 -39.83 -0.31 -5.14 16 25 C 0.05 0.73 6.03 37.16 0.22 0.95 16 26 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.15 2.31 8.06 -52.48 -0.42 1.89 16 33 H 0.41 5.89 8.93 -40.82 -0.36 5.52 16 34 H 0.10 2.13 6.69 -52.49 -0.35 1.78 16 35 H 0.11 2.61 4.43 -52.48 -0.23 2.38 16 36 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.44 6.86 -51.93 -0.36 1.08 16 40 H 0.07 1.13 7.56 -51.93 -0.39 0.74 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -28.31 367.61 -7.35 -35.66 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.33 Total: 8.88 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.92 Total: -3.20 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.64 Total: -41.62 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.13 Total: -21.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.15 Total: 15.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.31 -7.35 -35.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162425860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.472 kcal (2) G-P(sol) polarization free energy of solvation -28.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds